Wall clock time and date at job start Tue Mar 31 2020 08:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47666 * 2 1 4 4 C 1.52997 * 109.47012 * 120.00321 * 2 1 3 5 5 N 1.46504 * 109.47114 * 174.99730 * 4 2 1 6 6 C 1.46494 * 119.99996 * 269.99892 * 5 4 2 7 7 C 1.36938 * 119.99811 * 90.00404 * 5 4 2 8 8 H 1.07994 * 120.00205 * 23.60961 * 7 5 4 9 9 C 1.38811 * 119.99770 * 203.61873 * 7 5 4 10 10 N 1.31622 * 119.99824 * 11.30264 * 9 7 5 11 11 Si 1.86798 * 120.00079 * 191.30800 * 9 7 5 12 12 H 1.48493 * 109.47369 * 89.99437 * 11 9 7 13 13 H 1.48504 * 109.47192 * 209.99932 * 11 9 7 14 14 H 1.48504 * 109.46873 * 329.99294 * 11 9 7 15 15 N 1.46504 * 109.47181 * 240.00094 * 2 1 3 16 16 C 1.34776 * 119.99978 * 85.00045 * 15 2 1 17 17 O 1.21284 * 119.99926 * 0.02562 * 16 15 2 18 18 C 1.50698 * 120.00050 * 179.97438 * 16 15 2 19 19 H 1.08997 * 112.51216 * 309.67720 * 18 16 15 20 20 C 1.52883 * 113.16624 * 179.76789 * 18 16 15 21 21 C 1.51438 * 84.74392 * 244.78017 * 20 18 16 22 22 C 1.38962 * 145.49935 * 179.97438 * 21 20 18 23 23 C 1.37935 * 120.35536 * 180.02562 * 22 21 20 24 24 C 1.38457 * 120.15338 * 0.02562 * 23 22 21 25 25 F 1.35099 * 120.15453 * 180.02562 * 24 23 22 26 26 C 1.38404 * 119.69525 * 0.02562 * 24 23 22 27 27 C 1.38198 * 120.10316 * 359.97438 * 26 24 23 28 28 H 1.09005 * 109.46936 * 59.99681 * 1 2 3 29 29 H 1.09000 * 109.47289 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47044 * 300.00064 * 1 2 3 31 31 H 1.09004 * 109.47406 * 294.99876 * 4 2 1 32 32 H 1.08999 * 109.47034 * 54.99969 * 4 2 1 33 33 H 1.08999 * 109.46999 * 94.53866 * 6 5 4 34 34 H 1.09001 * 109.47455 * 214.53556 * 6 5 4 35 35 H 1.09009 * 109.47200 * 334.53654 * 6 5 4 36 36 H 0.97001 * 119.99578 * 180.02562 * 10 9 7 37 37 H 0.96999 * 120.00145 * 265.00680 * 15 2 1 38 38 H 1.08995 * 113.99168 * 358.73040 * 20 18 16 39 39 H 1.09006 * 113.98247 * 130.83413 * 20 18 16 40 40 H 1.08005 * 119.81935 * 0.02562 * 22 21 20 41 41 H 1.07999 * 119.92217 * 179.97438 * 23 22 21 42 42 H 1.08003 * 119.95151 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1258 -1.9920 0.5611 7 6 4.2799 0.1646 1.7241 8 1 3.8835 0.8068 2.4965 9 6 5.5800 0.3440 1.2718 10 7 5.9918 -0.2797 0.1884 11 14 6.7450 1.4705 2.2009 12 1 7.4751 0.6876 3.2300 13 1 7.7176 2.0686 1.2514 14 1 5.9682 2.5511 2.8599 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0182 -2.3571 17 8 1.8591 1.1587 -2.4115 18 6 2.6500 -0.7284 -3.5875 19 1 3.5700 -1.2829 -3.4025 20 6 2.7296 0.1789 -4.8154 21 6 1.6606 -0.7307 -5.3840 22 6 0.8420 -0.9927 -6.4759 23 6 -0.0322 -2.0594 -6.4517 24 6 -0.1004 -2.8776 -5.3368 25 9 -0.9562 -3.9227 -5.3132 26 6 0.7123 -2.6198 -4.2465 27 6 1.5877 -1.5508 -4.2718 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.7517 -0.1584 2.1370 32 1 1.6054 -1.7198 1.2950 33 1 4.3533 -1.7642 -0.4802 34 1 5.0471 -2.2390 1.0886 35 1 3.4425 -2.8402 0.6067 36 1 6.9004 -0.1546 -0.1273 37 1 2.2490 -1.6318 -1.1527 38 1 2.3928 1.1996 -4.6348 39 1 3.6819 0.1274 -5.3433 40 1 0.8905 -0.3577 -7.3482 41 1 -0.6655 -2.2564 -7.3040 42 1 0.6628 -3.2556 -3.3748 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324148.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:06 Heat of formation + Delta-G solvation = 3.547168 kcal Electronic energy + Delta-G solvation = -25386.644201 eV Core-core repulsion = 21669.218222 eV Total energy + Delta-G solvation = -3717.425979 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.00823 -40.97951 -38.73621 -36.43784 -34.96457 -34.00008 -31.38696 -30.93473 -30.21575 -27.47749 -26.19786 -25.66529 -25.13644 -22.78032 -21.78021 -21.05111 -20.09268 -19.54872 -17.58309 -16.96314 -16.84152 -16.58493 -15.69310 -15.45886 -15.23854 -14.86931 -14.84481 -14.09683 -13.91428 -13.72756 -13.57714 -13.28868 -13.08992 -12.75505 -12.35621 -12.14235 -12.01654 -11.79627 -11.74842 -11.44521 -11.38657 -11.09283 -10.86060 -10.79734 -10.66330 -10.53846 -10.22696 -9.97588 -9.87699 -9.58769 -8.99901 -8.61673 -8.51779 -8.37600 -6.76950 -5.75178 -3.21233 0.97245 1.06819 3.01054 3.37884 3.39033 3.44738 3.45593 3.72070 3.89252 4.19913 4.35494 4.49329 4.55117 4.79255 5.15482 5.18484 5.32820 5.36715 5.44545 5.47593 5.55150 5.68415 5.71835 5.84692 5.87490 5.94465 5.99449 6.04882 6.09680 6.12431 6.24371 6.46940 6.51864 6.54438 6.62416 6.74371 6.87424 7.16632 7.29240 7.62568 7.78911 8.09640 8.37331 8.77525 9.21209 9.83209 10.31538 11.30135 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.003838 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.106749 B = 7294.296775 C = 7759.887272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.117 3.883 3 H 0.086 0.914 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.161 3.839 7 C -0.256 4.256 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.906 5.906 11 Si 0.904 3.096 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.692 5.692 16 C 0.535 3.465 17 O -0.546 6.546 18 C -0.064 4.064 19 H 0.125 0.875 20 C -0.056 4.056 21 C -0.123 4.123 22 C -0.074 4.074 23 C -0.150 4.150 24 C 0.095 3.905 25 F -0.139 7.139 26 C -0.118 4.118 27 C -0.091 4.091 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.031 0.969 34 H 0.043 0.957 35 H -0.006 1.006 36 H 0.251 0.749 37 H 0.395 0.605 38 H 0.115 0.885 39 H 0.102 0.898 40 H 0.129 0.871 41 H 0.137 0.863 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 -5.187 -11.264 16.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.104 0.896 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.386 4.386 8 H 0.086 0.914 9 C -0.192 4.192 10 N -0.551 5.551 11 Si 0.734 3.266 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.205 1.205 15 N -0.340 5.340 16 C 0.319 3.681 17 O -0.424 6.424 18 C -0.085 4.085 19 H 0.143 0.857 20 C -0.093 4.093 21 C -0.124 4.124 22 C -0.092 4.092 23 C -0.168 4.168 24 C 0.076 3.924 25 F -0.117 7.117 26 C -0.137 4.137 27 C -0.092 4.092 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.013 0.987 36 H 0.061 0.939 37 H 0.229 0.771 38 H 0.133 0.867 39 H 0.120 0.880 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.258 -4.405 -11.336 15.910 hybrid contribution 0.693 -0.162 0.404 0.818 sum -9.565 -4.566 -10.932 15.227 Atomic orbital electron populations 1.22151 0.96918 1.01073 1.01656 1.21882 0.91622 0.99180 0.86357 0.89585 1.21198 0.85802 0.97210 0.94345 1.43881 0.99040 1.20867 1.68140 1.20848 0.94585 0.85053 0.97837 1.19191 0.94605 1.10545 1.14229 0.91437 1.25002 0.98850 0.99039 0.96324 1.70028 1.17163 1.45777 1.22085 0.86264 0.80939 0.80452 0.78920 1.21586 1.21770 1.20515 1.45735 1.65550 1.13642 1.09104 1.19734 0.77483 0.86874 0.83972 1.90640 1.51034 1.15785 1.84972 1.21399 0.97483 0.95313 0.94318 0.85718 1.21742 0.96629 0.99116 0.91785 1.22517 0.97727 0.97883 0.94231 1.20352 0.94409 0.96499 0.97949 1.20919 1.01577 0.96272 0.98067 1.17292 0.92079 0.87350 0.95689 1.91498 1.68106 1.55267 1.96876 1.20058 0.96480 0.98630 0.98528 1.21152 0.96358 0.94274 0.97375 0.93046 0.93237 0.92079 0.92286 0.94049 0.95069 0.93850 0.98723 0.93868 0.77053 0.86688 0.87979 0.85293 0.84559 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.48 37.16 0.35 -2.07 16 2 C 0.12 2.17 2.88 -67.93 -0.20 1.97 16 3 H 0.09 1.93 7.58 -51.93 -0.39 1.54 16 4 C 0.14 2.72 5.33 -4.04 -0.02 2.70 16 5 N -0.60 -14.04 2.78 -181.12 -0.50 -14.55 16 6 C 0.16 3.65 7.61 59.84 0.46 4.10 16 7 C -0.26 -6.83 9.66 -15.06 -0.15 -6.97 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 10 N -0.91 -25.37 10.66 55.49 0.59 -24.78 16 11 Si 0.90 21.74 29.57 -169.99 -5.03 16.71 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 N -0.69 -12.35 4.41 -53.80 -0.24 -12.58 16 16 C 0.53 9.86 7.29 -10.99 -0.08 9.78 16 17 O -0.55 -11.83 15.33 5.55 0.09 -11.74 16 18 C -0.06 -0.94 4.15 -96.55 -0.40 -1.34 16 19 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 20 C -0.06 -0.73 7.91 -27.58 -0.22 -0.95 16 21 C -0.12 -1.56 7.32 -107.53 -0.79 -2.35 16 22 C -0.07 -0.79 10.04 -39.42 -0.40 -1.19 16 23 C -0.15 -1.58 10.01 -39.61 -0.40 -1.98 16 24 C 0.10 1.15 7.31 -39.44 -0.29 0.86 16 25 F -0.14 -1.70 17.27 2.25 0.04 -1.66 16 26 C -0.12 -1.49 10.02 -39.53 -0.40 -1.88 16 27 C -0.09 -1.22 7.05 -104.55 -0.74 -1.96 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 32 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 33 H 0.03 0.74 6.90 -51.93 -0.36 0.38 16 34 H 0.04 1.09 7.30 -51.93 -0.38 0.71 16 35 H -0.01 -0.11 7.84 -51.92 -0.41 -0.52 16 36 H 0.25 6.91 8.31 -40.82 -0.34 6.58 16 37 H 0.40 6.51 7.17 -40.82 -0.29 6.22 16 38 H 0.12 1.65 7.02 -51.93 -0.36 1.29 16 39 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 41 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.13 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 353.26 15.07 5.32 5.32 Total: -1.00 -30.90 353.26 -9.02 -39.92 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.95 Total: 4.54 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -3.34 Total: -1.19 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.15 Total: -51.91 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.90 -9.02 -39.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324148.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.468 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds