Wall clock time and date at job start Tue Mar 31 2020 08:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46653 * 2 1 4 4 C 1.52995 * 109.47126 * 239.99322 * 2 1 3 5 5 N 1.46499 * 109.46960 * 185.00045 * 4 2 1 6 6 C 1.46497 * 120.00166 * 270.00380 * 5 4 2 7 7 C 1.36942 * 120.00044 * 89.99751 * 5 4 2 8 8 H 1.07999 * 119.99965 * 12.98190 * 7 5 4 9 9 C 1.38810 * 120.00002 * 192.98347 * 7 5 4 10 10 N 1.31616 * 120.00232 * 19.65507 * 9 7 5 11 11 Si 1.86807 * 120.00046 * 199.65675 * 9 7 5 12 12 H 1.48507 * 109.47102 * 86.13154 * 11 9 7 13 13 H 1.48492 * 109.47366 * 206.13633 * 11 9 7 14 14 H 1.48504 * 109.46823 * 326.13793 * 11 9 7 15 15 N 1.46500 * 109.46832 * 119.99432 * 2 1 3 16 16 C 1.34780 * 119.99659 * 275.00224 * 15 2 1 17 17 O 1.21283 * 120.00518 * 0.02562 * 16 15 2 18 18 C 1.50703 * 119.99766 * 179.97438 * 16 15 2 19 19 H 1.09000 * 112.50740 * 309.67544 * 18 16 15 20 20 C 1.52880 * 113.16734 * 179.76968 * 18 16 15 21 21 C 1.51433 * 84.73945 * 244.77941 * 20 18 16 22 22 C 1.38971 * 145.49587 * 179.97438 * 21 20 18 23 23 C 1.37938 * 120.35091 * 180.02562 * 22 21 20 24 24 C 1.38457 * 120.15644 * 0.02562 * 23 22 21 25 25 F 1.35098 * 120.15524 * 180.02562 * 24 23 22 26 26 C 1.38404 * 119.69506 * 359.97438 * 24 23 22 27 27 C 1.38195 * 120.09892 * 359.97438 * 26 24 23 28 28 H 1.09005 * 109.46499 * 60.00982 * 1 2 3 29 29 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47150 * 300.00611 * 1 2 3 31 31 H 1.08999 * 109.47316 * 65.00584 * 4 2 1 32 32 H 1.08998 * 109.47515 * 304.99896 * 4 2 1 33 33 H 1.08998 * 109.47560 * 95.25191 * 6 5 4 34 34 H 1.09001 * 109.47182 * 215.24968 * 6 5 4 35 35 H 1.09001 * 109.47167 * 335.24834 * 6 5 4 36 36 H 0.97006 * 119.99782 * 179.97438 * 10 9 7 37 37 H 0.96993 * 120.00524 * 95.00109 * 15 2 1 38 38 H 1.08998 * 113.98816 * 358.72247 * 20 18 16 39 39 H 1.08994 * 113.99153 * 130.83192 * 20 18 16 40 40 H 1.07994 * 119.82410 * 0.02562 * 22 21 20 41 41 H 1.08006 * 119.92134 * 179.97438 * 23 22 21 42 42 H 1.08001 * 119.94612 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 3.5001 -0.8265 -1.1904 6 6 4.3344 0.2339 -1.7611 7 6 4.0850 -1.9159 -0.6019 8 1 3.4919 -2.7883 -0.3708 9 6 5.4403 -1.8988 -0.3023 10 7 6.0802 -0.7522 -0.2131 11 14 6.3561 -3.5034 -0.0260 12 1 6.8209 -4.0391 -1.3307 13 1 7.5267 -3.2599 0.8546 14 1 5.4484 -4.4868 0.6177 15 7 2.0183 -0.6905 1.1963 16 6 2.1469 -0.0180 2.3572 17 8 1.8581 1.1587 2.4117 18 6 2.6487 -0.7284 3.5879 19 1 2.1122 -1.6573 3.7813 20 6 2.7390 0.1818 4.8130 21 6 4.2291 -0.0698 4.7167 22 6 5.4742 0.1989 5.2726 23 6 6.6151 -0.3498 4.7249 24 6 6.5274 -1.1730 3.6151 25 9 7.6448 -1.7107 3.0790 26 6 5.2896 -1.4433 3.0581 27 6 4.1471 -0.8940 3.6083 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.7518 -0.1585 -2.1369 32 1 1.6055 -1.7199 -1.2950 33 1 4.6174 0.9356 -0.9765 34 1 5.2319 -0.2049 -2.1970 35 1 3.7747 0.7600 -2.5344 36 1 7.0272 -0.7403 -0.0034 37 1 2.2490 -1.6316 1.1529 38 1 2.4506 1.2150 4.6196 39 1 2.2764 -0.2332 5.7084 40 1 5.5488 0.8406 6.1380 41 1 7.5792 -0.1360 5.1623 42 1 5.2165 -2.0846 2.1921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324149.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:09 Heat of formation + Delta-G solvation = 8.802072 kcal Electronic energy + Delta-G solvation = -26552.900502 eV Core-core repulsion = 22835.702393 eV Total energy + Delta-G solvation = -3717.198109 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.36790 -40.66619 -38.54643 -36.38996 -34.64118 -33.97834 -31.47839 -30.37261 -30.07829 -27.12741 -26.19613 -25.62885 -24.91056 -22.45923 -21.69144 -20.74813 -19.89442 -19.40329 -17.34963 -16.77752 -16.50189 -16.17594 -15.53375 -15.07025 -14.96396 -14.76196 -14.36092 -14.06216 -13.75384 -13.57500 -13.20260 -12.99121 -12.86481 -12.59992 -12.38647 -12.09256 -11.77799 -11.57701 -11.42720 -11.41755 -11.28127 -11.08724 -10.80711 -10.73861 -10.43101 -10.28299 -10.13568 -10.05539 -9.80539 -9.39359 -8.58119 -8.45193 -8.31468 -8.07381 -6.88223 -5.75920 -3.12416 1.44156 1.61040 3.14487 3.31318 3.40995 3.48733 3.77747 3.97248 4.28260 4.44126 4.54375 4.70895 4.88789 5.26049 5.30433 5.35928 5.39921 5.46792 5.58325 5.64835 5.82858 5.87432 5.96079 5.98140 6.08679 6.14116 6.19891 6.23076 6.32849 6.43167 6.48836 6.50534 6.57648 6.72471 6.85596 6.98480 7.24452 7.27102 7.41413 7.64369 7.79303 8.23791 8.30764 8.87575 9.18164 9.83817 10.31265 11.28311 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.008760 C = 0.005377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.107050 B = 3195.562537 C = 5206.194956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 H 0.076 0.924 4 C 0.143 3.857 5 N -0.598 5.598 6 C 0.164 3.836 7 C -0.258 4.258 8 H 0.067 0.933 9 C 0.012 3.988 10 N -0.887 5.887 11 Si 0.867 3.133 12 H -0.288 1.288 13 H -0.279 1.279 14 H -0.280 1.280 15 N -0.684 5.684 16 C 0.531 3.469 17 O -0.556 6.556 18 C -0.063 4.063 19 H 0.113 0.887 20 C -0.054 4.054 21 C -0.137 4.137 22 C -0.082 4.082 23 C -0.152 4.152 24 C 0.102 3.898 25 F -0.136 7.136 26 C -0.085 4.085 27 C -0.088 4.088 28 H 0.058 0.942 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.024 0.976 34 H 0.050 0.950 35 H -0.005 1.005 36 H 0.253 0.747 37 H 0.404 0.596 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.123 0.877 41 H 0.132 0.868 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.284 -0.569 8.212 10.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.008 3.992 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.020 3.980 7 C -0.387 4.387 8 H 0.085 0.915 9 C -0.187 4.187 10 N -0.531 5.531 11 Si 0.696 3.304 12 H -0.216 1.216 13 H -0.205 1.205 14 H -0.205 1.205 15 N -0.332 5.332 16 C 0.316 3.684 17 O -0.435 6.435 18 C -0.084 4.084 19 H 0.131 0.869 20 C -0.091 4.091 21 C -0.137 4.137 22 C -0.100 4.100 23 C -0.171 4.171 24 C 0.083 3.917 25 F -0.114 7.114 26 C -0.104 4.104 27 C -0.089 4.089 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.014 0.986 36 H 0.064 0.936 37 H 0.239 0.761 38 H 0.128 0.872 39 H 0.113 0.887 40 H 0.141 0.859 41 H 0.150 0.850 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.213 0.276 8.212 10.301 hybrid contribution 1.206 -1.430 -0.090 1.873 sum -5.007 -1.154 8.121 9.610 Atomic orbital electron populations 1.22149 0.96825 1.01247 1.01559 1.21867 0.91843 0.98405 0.87053 0.90602 1.21150 0.85847 0.97942 0.93642 1.43936 0.98884 1.22615 1.66580 1.20815 0.93107 0.90133 0.93977 1.19031 0.92305 0.91904 1.35488 0.91476 1.24673 0.97504 0.95737 1.00809 1.70120 1.09435 1.22540 1.51013 0.86909 0.80914 0.84376 0.78202 1.21576 1.20472 1.20516 1.45703 1.64661 1.14327 1.08526 1.19843 0.77177 0.86918 0.84420 1.90615 1.51793 1.15807 1.85272 1.21311 0.91969 1.00206 0.94942 0.86907 1.21659 0.89634 1.01755 0.96064 1.22336 0.95178 0.98763 0.97430 1.20161 0.90068 0.99783 0.99991 1.20865 0.99432 0.99824 0.96970 1.17331 0.82498 0.97394 0.94477 1.91517 1.50024 1.84309 1.85557 1.20347 0.89153 1.01102 0.99803 1.20798 0.93879 0.97839 0.96347 0.92269 0.93006 0.92946 0.92944 0.93306 0.95784 0.93130 0.98626 0.93603 0.76088 0.87153 0.88667 0.85897 0.85007 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.48 37.16 0.35 -1.96 16 2 C 0.12 2.10 2.88 -67.93 -0.20 1.91 16 3 H 0.08 1.61 7.58 -51.93 -0.39 1.22 16 4 C 0.14 2.67 5.36 -4.04 -0.02 2.64 16 5 N -0.60 -13.81 2.83 -181.13 -0.51 -14.32 16 6 C 0.16 3.96 9.04 59.85 0.54 4.50 16 7 C -0.26 -6.33 8.13 -15.06 -0.12 -6.45 16 8 H 0.07 1.59 7.73 -52.49 -0.41 1.19 16 9 C 0.01 0.31 3.80 -17.43 -0.07 0.24 16 10 N -0.89 -24.23 10.54 55.49 0.58 -23.65 16 11 Si 0.87 20.64 28.06 -169.99 -4.77 15.87 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 N -0.68 -12.62 4.49 -53.80 -0.24 -12.86 16 16 C 0.53 10.06 7.30 -10.98 -0.08 9.98 16 17 O -0.56 -12.02 15.33 5.56 0.09 -11.93 16 18 C -0.06 -1.00 4.14 -96.56 -0.40 -1.40 16 19 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 20 C -0.05 -0.75 7.91 -27.58 -0.22 -0.97 16 21 C -0.14 -2.21 7.32 -107.55 -0.79 -3.00 16 22 C -0.08 -1.23 10.04 -39.42 -0.40 -1.63 16 23 C -0.15 -2.47 10.01 -39.61 -0.40 -2.87 16 24 C 0.10 2.01 7.31 -39.44 -0.29 1.72 16 25 F -0.14 -2.87 17.27 2.25 0.04 -2.83 16 26 C -0.09 -1.75 10.02 -39.54 -0.40 -2.15 16 27 C -0.09 -1.61 7.05 -104.56 -0.74 -2.35 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.90 7.86 -51.93 -0.41 0.50 16 32 H 0.05 0.86 8.02 -51.93 -0.42 0.44 16 33 H 0.02 0.64 7.59 -51.93 -0.39 0.25 16 34 H 0.05 1.31 6.84 -51.93 -0.36 0.96 16 35 H 0.00 -0.10 7.83 -51.93 -0.41 -0.51 16 36 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.40 7.34 7.29 -40.82 -0.30 7.04 16 38 H 0.11 1.67 7.02 -51.93 -0.36 1.30 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 41 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.15 3.28 4.91 -52.49 -0.26 3.02 16 LS Contribution 347.43 15.07 5.24 5.24 Total: -1.00 -29.80 347.43 -8.58 -38.38 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -5.79 Total: 7.88 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -3.21 Total: -1.78 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.17 Total: -50.83 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.77 Total: 15.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.80 -8.58 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324149.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.185 kcal (2) G-P(sol) polarization free energy of solvation -29.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds