Wall clock time and date at job start Tue Mar 31 2020 08:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46971 * 2 1 4 4 C 1.52999 * 109.47268 * 239.99868 * 2 1 3 5 5 N 1.46499 * 109.47023 * 185.00137 * 4 2 1 6 6 C 1.46497 * 120.00009 * 269.99976 * 5 4 2 7 7 C 1.36938 * 120.00004 * 89.99868 * 5 4 2 8 8 H 1.08001 * 120.00323 * 20.30425 * 7 5 4 9 9 C 1.38821 * 120.00074 * 200.30352 * 7 5 4 10 10 N 1.31613 * 119.99913 * 15.01384 * 9 7 5 11 11 Si 1.86803 * 119.99890 * 195.01635 * 9 7 5 12 12 H 1.48495 * 109.46765 * 85.00229 * 11 9 7 13 13 H 1.48498 * 109.46846 * 205.00288 * 11 9 7 14 14 H 1.48495 * 109.47009 * 325.00187 * 11 9 7 15 15 N 1.46502 * 109.46833 * 119.99779 * 2 1 3 16 16 C 1.34783 * 119.99805 * 274.99980 * 15 2 1 17 17 O 1.21272 * 120.00225 * 0.02562 * 16 15 2 18 18 C 1.50697 * 119.99518 * 180.02562 * 16 15 2 19 19 H 1.09010 * 113.23246 * 47.53230 * 18 16 15 20 20 C 1.52888 * 113.98764 * 179.97438 * 18 16 15 21 21 C 1.50762 * 89.76465 * 113.94685 * 20 18 16 22 22 C 1.38254 * 149.30321 * 179.97438 * 21 20 18 23 23 C 1.38138 * 120.15867 * 180.02562 * 22 21 20 24 24 C 1.38458 * 119.72166 * 0.27676 * 23 22 21 25 25 F 1.35106 * 119.93802 * 179.72177 * 24 23 22 26 26 C 1.38202 * 120.12505 * 359.41132 * 24 23 22 27 27 C 1.38379 * 90.24988 * 0.02562 * 21 20 18 28 28 H 1.08998 * 109.47414 * 300.00180 * 1 2 3 29 29 H 1.09005 * 109.47109 * 60.00335 * 1 2 3 30 30 H 1.08999 * 109.46971 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46835 * 305.00043 * 4 2 1 32 32 H 1.08995 * 109.47174 * 65.00459 * 4 2 1 33 33 H 1.09000 * 109.47529 * 95.10717 * 6 5 4 34 34 H 1.09009 * 109.47110 * 215.10761 * 6 5 4 35 35 H 1.09003 * 109.47234 * 335.10377 * 6 5 4 36 36 H 0.96999 * 120.00062 * 179.97438 * 10 9 7 37 37 H 0.96994 * 120.00027 * 95.00688 * 15 2 1 38 38 H 1.08998 * 113.16257 * 358.72429 * 20 18 16 39 39 H 1.09000 * 113.16785 * 229.17154 * 20 18 16 40 40 H 1.08007 * 119.92031 * 0.05798 * 22 21 20 41 41 H 1.08000 * 120.13727 * 180.02562 * 23 22 21 42 42 H 1.07995 * 119.85253 * 180.25475 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3343 0.2340 -1.7611 7 6 4.0850 -1.9159 -0.6021 8 1 3.5229 -2.8298 -0.4787 9 6 5.4004 -1.8456 -0.1642 10 7 5.9903 -0.6759 -0.0379 11 14 6.3332 -3.4113 0.2457 12 1 6.9257 -3.9734 -0.9945 13 1 7.4147 -3.1035 1.2157 14 1 5.4007 -4.4014 0.8417 15 7 2.0183 -0.6906 1.1962 16 6 2.1469 -0.0181 2.3572 17 8 1.8581 1.1584 2.4117 18 6 2.6497 -0.7284 3.5875 19 1 3.5428 -1.3260 3.4042 20 6 2.7427 0.1635 4.8258 21 6 1.6552 -0.6473 5.4838 22 6 0.8388 -0.8767 6.5757 23 6 -0.0702 -1.9167 6.5562 24 6 -0.1563 -2.7324 5.4407 25 9 -1.0398 -3.7543 5.4193 26 6 0.6552 -2.4992 4.3467 27 6 1.5713 -1.4552 4.3634 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6054 -1.7198 -1.2951 32 1 1.7518 -0.1583 -2.1369 33 1 4.6152 0.9371 -0.9770 34 1 5.2331 -0.2046 -2.1949 35 1 3.7756 0.7585 -2.5363 36 1 6.9094 -0.6267 0.2685 37 1 2.2490 -1.6317 1.1527 38 1 2.4509 1.1960 4.6334 39 1 3.7024 0.0887 5.3371 40 1 0.9115 -0.2409 7.4457 41 1 -0.7081 -2.0954 7.4092 42 1 0.5815 -3.1357 3.4773 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754324150.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:56:12 Heat of formation + Delta-G solvation = 2.753685 kcal Electronic energy + Delta-G solvation = -25537.409602 eV Core-core repulsion = 21819.949215 eV Total energy + Delta-G solvation = -3717.460387 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.94407 -40.87132 -38.68093 -36.40868 -34.92002 -33.96882 -31.44335 -30.87815 -30.09452 -27.46217 -26.21328 -25.64740 -25.06205 -22.68453 -21.79681 -21.03783 -19.95289 -19.50499 -17.56427 -17.01860 -16.58851 -16.51313 -15.63618 -15.51057 -15.12527 -14.90886 -14.77477 -14.04544 -13.91943 -13.69329 -13.59802 -13.24114 -12.93041 -12.83840 -12.38637 -12.17498 -11.97607 -11.75720 -11.65218 -11.42083 -11.32069 -11.06959 -10.88830 -10.74031 -10.65217 -10.43470 -10.28362 -10.09082 -9.86334 -9.53964 -8.92549 -8.61440 -8.47252 -8.30550 -6.85137 -5.78912 -3.23311 1.03231 1.13070 3.07005 3.30482 3.37841 3.39894 3.44643 3.83414 4.01190 4.18034 4.41955 4.47672 4.61086 4.85107 5.24589 5.26022 5.30462 5.42826 5.47016 5.55035 5.61297 5.66819 5.77584 5.86794 5.93087 5.96960 6.01459 6.08827 6.14312 6.17853 6.23673 6.43143 6.50246 6.60831 6.71176 6.80801 6.85997 7.24947 7.33954 7.65581 7.74956 8.24574 8.30717 8.87777 9.15100 9.79845 10.29316 11.25042 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.013541 B = 0.004718 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.314897 B = 5933.215999 C = 6546.011219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.077 0.923 4 C 0.142 3.858 5 N -0.598 5.598 6 C 0.163 3.837 7 C -0.257 4.257 8 H 0.067 0.933 9 C 0.007 3.993 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.280 1.280 15 N -0.681 5.681 16 C 0.538 3.462 17 O -0.555 6.555 18 C -0.069 4.069 19 H 0.131 0.869 20 C -0.053 4.053 21 C -0.127 4.127 22 C -0.067 4.067 23 C -0.149 4.149 24 C 0.094 3.906 25 F -0.141 7.141 26 C -0.127 4.127 27 C -0.084 4.084 28 H 0.051 0.949 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.042 0.958 35 H -0.003 1.003 36 H 0.253 0.747 37 H 0.405 0.595 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 -1.307 9.225 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.095 0.905 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.018 3.982 7 C -0.387 4.387 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.542 5.542 11 Si 0.726 3.274 12 H -0.215 1.215 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.329 5.329 16 C 0.323 3.677 17 O -0.434 6.434 18 C -0.090 4.090 19 H 0.149 0.851 20 C -0.090 4.090 21 C -0.127 4.127 22 C -0.085 4.085 23 C -0.168 4.168 24 C 0.075 3.925 25 F -0.119 7.119 26 C -0.145 4.145 27 C -0.085 4.085 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.047 0.953 34 H 0.061 0.939 35 H 0.016 0.984 36 H 0.063 0.937 37 H 0.240 0.760 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.920 -0.489 9.256 13.577 hybrid contribution 0.614 -1.612 0.256 1.744 sum -9.306 -2.101 9.512 13.472 Atomic orbital electron populations 1.22156 0.96902 1.01264 1.01541 1.21848 0.91780 0.98408 0.86952 0.90466 1.21184 0.85913 0.97931 0.93617 1.43912 0.98910 1.22680 1.66537 1.20798 0.92888 0.90422 0.94055 1.19075 0.95966 0.89879 1.33752 0.91541 1.24932 0.98501 0.96137 0.99703 1.70090 1.12784 1.21725 1.49610 0.86426 0.79983 0.83148 0.77876 1.21475 1.21779 1.20554 1.45667 1.64525 1.14330 1.08392 1.19550 0.77434 0.86719 0.83984 1.90617 1.51664 1.15938 1.85194 1.21459 0.97291 0.96492 0.93763 0.85137 1.21486 0.96292 1.00011 0.91245 1.21880 0.98074 0.98492 0.94299 1.19967 0.94112 0.96911 0.97516 1.20975 1.01306 0.96458 0.98062 1.17303 0.91508 0.88023 0.95708 1.91496 1.66453 1.57084 1.96905 1.20481 0.96379 0.99284 0.98395 1.21820 0.95754 0.94327 0.96614 0.93003 0.92233 0.93040 0.93332 0.92915 0.95255 0.93880 0.98426 0.93711 0.75964 0.87266 0.88612 0.85176 0.84411 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.48 37.16 0.35 -2.07 16 2 C 0.12 2.16 2.88 -67.93 -0.20 1.97 16 3 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 4 C 0.14 2.67 5.36 -4.04 -0.02 2.64 16 5 N -0.60 -13.85 2.82 -181.12 -0.51 -14.36 16 6 C 0.16 3.88 9.02 59.85 0.54 4.42 16 7 C -0.26 -6.34 8.02 -15.06 -0.12 -6.46 16 8 H 0.07 1.58 7.86 -52.49 -0.41 1.17 16 9 C 0.01 0.17 5.06 -17.43 -0.09 0.08 16 10 N -0.90 -24.67 10.67 55.49 0.59 -24.07 16 11 Si 0.90 20.45 29.58 -169.99 -5.03 15.42 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 N -0.68 -12.74 4.49 -53.81 -0.24 -12.98 16 16 C 0.54 10.29 7.36 -10.98 -0.08 10.21 16 17 O -0.55 -12.08 15.38 5.56 0.09 -12.00 16 18 C -0.07 -1.10 4.47 -92.62 -0.41 -1.51 16 19 H 0.13 2.05 8.14 -51.92 -0.42 1.63 16 20 C -0.05 -0.74 7.54 -31.52 -0.24 -0.98 16 21 C -0.13 -1.71 7.59 -104.53 -0.79 -2.51 16 22 C -0.07 -0.76 10.03 -39.61 -0.40 -1.16 16 23 C -0.15 -1.67 10.04 -39.54 -0.40 -2.07 16 24 C 0.09 1.22 7.29 -39.51 -0.29 0.93 16 25 F -0.14 -1.85 17.26 2.25 0.04 -1.81 16 26 C -0.13 -1.75 10.02 -39.35 -0.39 -2.14 16 27 C -0.08 -1.24 6.83 -107.57 -0.73 -1.97 16 28 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.87 8.03 -51.93 -0.42 0.45 16 32 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 33 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 34 H 0.04 1.10 7.21 -51.92 -0.37 0.73 16 35 H 0.00 -0.06 7.84 -51.93 -0.41 -0.47 16 36 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 37 H 0.40 7.46 7.40 -40.82 -0.30 7.16 16 38 H 0.11 1.64 7.04 -51.93 -0.37 1.28 16 39 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 41 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 353.92 15.07 5.33 5.33 Total: -1.00 -29.50 353.92 -8.98 -38.48 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -5.98 Total: 6.61 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.27 Total: -0.62 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.16 Total: -51.41 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.50 -8.98 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754324150.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.232 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds