Wall clock time and date at job start Tue Mar 31 2020 08:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35432 * 116.99880 * 2 1 4 4 N 1.32239 * 119.79814 * 359.97438 * 3 2 1 5 5 C 1.31876 * 121.79669 * 180.02562 * 4 3 2 6 6 C 1.38357 * 121.19121 * 359.97438 * 5 4 3 7 7 C 1.38342 * 119.45229 * 0.25555 * 6 5 4 8 8 C 1.39985 * 118.35100 * 359.51264 * 7 6 5 9 9 C 1.47529 * 120.60097 * 180.21817 * 8 7 6 10 10 O 1.21585 * 120.00409 * 148.91483 * 9 8 7 11 11 N 1.34781 * 119.99261 * 328.92171 * 9 8 7 12 12 C 1.46496 * 120.00408 * 6.75395 * 11 9 8 13 13 C 1.50696 * 109.47023 * 100.44281 * 12 11 9 14 14 H 1.07998 * 120.00642 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99948 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99818 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00016 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47418 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47265 * 119.99960 * 17 15 13 20 20 H 1.48500 * 109.47225 * 239.99648 * 17 15 13 21 21 C 1.46499 * 119.99538 * 186.75752 * 11 9 8 22 22 C 1.52999 * 109.47478 * 88.89214 * 21 11 9 23 23 C 1.53006 * 109.46865 * 64.47929 * 22 21 11 24 24 C 1.52997 * 109.47260 * 184.47802 * 22 21 11 25 25 C 1.52994 * 109.47217 * 304.48230 * 22 21 11 26 26 H 1.09004 * 109.46626 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47124 * 299.99749 * 1 2 3 28 28 H 1.08994 * 109.47072 * 60.00105 * 1 2 3 29 29 H 1.07998 * 119.40412 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.27426 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.81911 * 179.74404 * 7 6 5 32 32 H 1.08999 * 109.47140 * 220.44416 * 12 11 9 33 33 H 1.09002 * 109.46851 * 340.44365 * 12 11 9 34 34 H 0.97005 * 119.99836 * 179.97438 * 16 15 13 35 35 H 1.09009 * 109.47251 * 208.89689 * 21 11 9 36 36 H 1.09009 * 109.47114 * 328.88991 * 21 11 9 37 37 H 1.09005 * 109.47048 * 60.00053 * 23 22 21 38 38 H 1.08995 * 109.47125 * 179.97438 * 23 22 21 39 39 H 1.09006 * 109.47181 * 300.00151 * 23 22 21 40 40 H 1.08996 * 109.47420 * 60.00206 * 24 22 21 41 41 H 1.08995 * 109.47182 * 180.02562 * 24 22 21 42 42 H 1.09005 * 109.47237 * 300.00304 * 24 22 21 43 43 H 1.09001 * 109.47478 * 65.19586 * 25 22 21 44 44 H 1.09000 * 109.47580 * 185.20139 * 25 22 21 45 45 H 1.09007 * 109.47204 * 305.19695 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 -0.0005 5 6 1.8770 3.5084 -0.0010 6 6 3.2525 3.6576 -0.0005 7 6 4.0587 2.5334 -0.0048 8 6 3.4449 1.2753 0.0009 9 6 4.2569 0.0435 0.0015 10 8 3.8407 -0.9588 0.5494 11 7 5.4603 0.0296 -0.6053 12 6 6.0278 1.2717 -1.1357 13 6 7.0522 1.8086 -0.1697 14 1 7.2602 1.2775 0.7474 15 6 7.7241 2.9779 -0.4566 16 7 7.4712 3.6244 -1.5737 17 14 8.9945 3.6431 0.7405 18 1 9.0927 2.7365 1.9125 19 1 10.3149 3.7256 0.0659 20 1 8.5855 4.9964 1.1950 21 6 6.2009 -1.2278 -0.7346 22 6 5.7961 -1.9269 -2.0339 23 6 6.2207 -1.0696 -3.2279 24 6 6.4845 -3.2909 -2.1150 25 6 4.2785 -2.1193 -2.0582 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.2484 4.3866 -0.0010 30 1 3.6932 4.6436 -0.0014 31 1 5.1348 2.6242 -0.0087 32 1 6.5032 1.0729 -2.0962 33 1 5.2335 2.0063 -1.2685 34 1 7.9436 4.4473 -1.7754 35 1 7.2707 -1.0194 -0.7521 36 1 5.9705 -1.8739 0.1127 37 1 7.3020 -0.9325 -3.2106 38 1 5.9328 -1.5678 -4.1536 39 1 5.7303 -0.0978 -3.1702 40 1 6.1821 -3.9017 -1.2645 41 1 6.1965 -3.7887 -3.0409 42 1 7.5657 -3.1538 -2.0977 43 1 3.7893 -1.1458 -2.0936 44 1 3.9996 -2.6983 -2.9386 45 1 3.9652 -2.6509 -1.1596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265247089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:53 Heat of formation + Delta-G solvation = -22.332137 kcal Electronic energy + Delta-G solvation = -27050.393018 eV Core-core repulsion = 23455.305134 eV Total energy + Delta-G solvation = -3595.087885 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.55552 -39.03553 -37.50355 -36.48173 -34.70863 -32.48885 -31.92318 -30.37012 -27.88460 -27.08701 -26.89683 -26.66445 -25.88296 -23.76614 -22.63909 -22.37789 -19.57926 -18.18521 -17.85133 -16.78409 -16.66540 -16.35760 -15.68441 -15.20136 -14.84450 -14.80681 -14.51774 -14.01888 -13.77947 -13.52379 -13.24669 -13.07094 -12.82080 -12.71699 -12.42866 -12.15415 -11.91853 -11.78782 -11.47777 -11.20553 -11.15412 -11.11006 -10.94274 -10.91314 -10.67170 -10.50848 -10.30612 -10.20672 -10.05972 -9.77157 -9.51796 -9.20582 -8.87127 -8.50244 -8.11963 -7.60403 -6.32768 -4.42518 1.26127 1.77093 3.13805 3.23811 3.28300 3.40335 3.57444 3.91992 4.20436 4.35215 4.62371 4.97068 5.23252 5.25955 5.34594 5.40144 5.43362 5.44782 5.48906 5.51151 5.72776 5.83975 5.92441 5.93962 5.97027 6.02709 6.18019 6.25031 6.27896 6.37817 6.45450 6.49742 6.55883 6.62728 6.66849 6.68688 6.85984 6.90477 7.03399 7.17466 7.51861 7.60247 7.64468 7.90651 8.13550 8.37504 8.69729 9.07428 9.27011 10.71004 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.010084 B = 0.007393 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.963841 B = 3786.697646 C = 5900.543549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.282 6.282 3 C 0.356 3.644 4 N -0.559 5.559 5 C 0.147 3.853 6 C -0.224 4.224 7 C -0.016 4.016 8 C -0.205 4.205 9 C 0.568 3.432 10 O -0.550 6.550 11 N -0.587 5.587 12 C 0.203 3.797 13 C -0.544 4.544 14 H 0.066 0.934 15 C 0.068 3.932 16 N -0.882 5.882 17 Si 0.895 3.105 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.133 3.867 22 C -0.085 4.085 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.130 4.130 26 H 0.091 0.909 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.155 0.845 30 H 0.138 0.862 31 H 0.209 0.791 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.268 0.732 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.040 0.960 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.997 -3.590 -1.145 7.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.187 6.187 3 C 0.176 3.824 4 N -0.284 5.284 5 C -0.009 4.009 6 C -0.245 4.245 7 C -0.040 4.040 8 C -0.211 4.211 9 C 0.356 3.644 10 O -0.430 6.430 11 N -0.317 5.317 12 C 0.084 3.916 13 C -0.582 4.582 14 H 0.084 0.916 15 C -0.137 4.137 16 N -0.519 5.519 17 Si 0.722 3.278 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.206 1.206 21 C 0.010 3.990 22 C -0.086 4.086 23 C -0.198 4.198 24 C -0.193 4.193 25 C -0.188 4.188 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.172 0.828 30 H 0.156 0.844 31 H 0.225 0.775 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.948 -4.320 -0.982 9.099 hybrid contribution 1.385 0.929 0.427 1.722 sum -6.562 -3.391 -0.555 7.407 Atomic orbital electron populations 1.22813 0.78428 1.02493 1.01894 1.86433 1.21649 1.23864 1.86741 1.19790 0.88202 0.84721 0.89673 1.67330 1.40347 0.98671 1.22017 1.22487 0.93248 0.93353 0.91806 1.22020 0.94276 1.00466 1.07701 1.23614 1.05693 0.89551 0.85189 1.20055 0.90967 0.96026 1.14027 1.17687 0.81256 0.86709 0.78749 1.90689 1.71841 1.34903 1.45588 1.47923 1.17366 1.10065 1.56307 1.20384 0.94722 0.81024 0.95492 1.21565 1.21943 1.08307 1.06375 0.91561 1.24997 0.96716 0.96521 0.95424 1.69943 1.41621 1.17183 1.23141 0.86468 0.81184 0.78994 0.81145 1.19473 1.20689 1.20615 1.21340 0.96283 0.85306 0.96113 1.20963 0.96133 0.95131 0.96369 1.21974 1.01356 1.00200 0.96274 1.21776 1.00151 0.96098 1.01253 1.21813 0.94547 1.01428 1.00975 0.89026 0.92648 0.92730 0.82799 0.84392 0.77458 0.93858 0.92299 0.92233 0.90268 0.90979 0.92656 0.93796 0.91591 0.92808 0.93002 0.92743 0.93133 0.94110 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 101.05 1.05 1.59 16 2 O -0.28 -5.35 9.03 -36.66 -0.33 -5.68 16 3 C 0.36 6.99 7.48 -16.61 -0.12 6.86 16 4 N -0.56 -9.79 9.21 -12.98 -0.12 -9.91 16 5 C 0.15 2.26 11.17 -17.49 -0.20 2.07 16 6 C -0.22 -3.77 10.09 -39.50 -0.40 -4.17 16 7 C -0.02 -0.33 7.59 -38.89 -0.30 -0.62 16 8 C -0.20 -4.29 5.59 -104.69 -0.58 -4.88 16 9 C 0.57 12.50 5.53 -12.47 -0.07 12.44 16 10 O -0.55 -12.90 13.78 -13.38 -0.18 -13.09 16 11 N -0.59 -12.34 2.01 -176.29 -0.35 -12.70 16 12 C 0.20 4.58 4.00 -5.20 -0.02 4.56 16 13 C -0.54 -13.17 7.59 -34.44 -0.26 -13.43 16 14 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 15 C 0.07 1.66 5.37 -17.82 -0.10 1.56 16 16 N -0.88 -22.27 13.29 55.43 0.74 -21.53 16 17 Si 0.90 19.31 29.54 -169.99 -5.02 14.29 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 C 0.13 2.50 4.57 -4.04 -0.02 2.48 16 22 C -0.08 -1.39 0.85 -154.51 -0.13 -1.52 16 23 C -0.14 -2.31 7.53 37.16 0.28 -2.03 16 24 C -0.13 -1.83 8.47 37.16 0.31 -1.51 16 25 C -0.13 -2.24 7.13 37.15 0.26 -1.97 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 28 H 0.05 0.71 8.10 -51.93 -0.42 0.29 16 29 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 30 H 0.14 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.21 4.62 3.45 -52.49 -0.18 4.44 16 32 H 0.04 1.02 5.71 -51.93 -0.30 0.72 16 33 H 0.06 1.38 3.90 -52.16 -0.20 1.17 16 34 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 35 H 0.08 1.49 8.05 -51.92 -0.42 1.07 16 36 H 0.07 1.39 7.37 -51.92 -0.38 1.00 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.22 5.78 -51.93 -0.30 0.92 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.97 6.63 -51.93 -0.34 0.63 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 1.16 7.25 -51.93 -0.38 0.78 16 LS Contribution 355.08 15.07 5.35 5.35 Total: -1.00 -27.82 355.08 -6.90 -34.72 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.69 Total: 7.12 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.29 Total: 1.43 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 0.26 Total: -44.14 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.52 Total: -18.77 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -27.82 -6.90 -34.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265247089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.386 kcal (2) G-P(sol) polarization free energy of solvation -27.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds