Wall clock time and date at job start Tue Mar 31 2020 08:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35432 * 116.99880 * 2 1 4 4 N 1.32239 * 119.79814 * 359.97438 * 3 2 1 5 5 C 1.31876 * 121.79669 * 180.02562 * 4 3 2 6 6 C 1.38357 * 121.19121 * 359.97438 * 5 4 3 7 7 C 1.38342 * 119.45229 * 0.25555 * 6 5 4 8 8 C 1.39985 * 118.35100 * 359.51264 * 7 6 5 9 9 C 1.47529 * 120.60097 * 180.21817 * 8 7 6 10 10 O 1.21585 * 120.00409 * 148.91483 * 9 8 7 11 11 N 1.34781 * 119.99261 * 328.92171 * 9 8 7 12 12 C 1.46496 * 120.00408 * 6.75395 * 11 9 8 13 13 C 1.50696 * 109.47023 * 100.44281 * 12 11 9 14 14 H 1.07998 * 120.00642 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99948 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99818 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 120.00016 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47418 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47265 * 119.99960 * 17 15 13 20 20 H 1.48500 * 109.47225 * 239.99648 * 17 15 13 21 21 C 1.46499 * 119.99538 * 186.75752 * 11 9 8 22 22 C 1.52999 * 109.47478 * 88.89214 * 21 11 9 23 23 C 1.53006 * 109.46865 * 64.47929 * 22 21 11 24 24 C 1.52997 * 109.47260 * 184.47802 * 22 21 11 25 25 C 1.52994 * 109.47217 * 304.48230 * 22 21 11 26 26 H 1.09004 * 109.46626 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47124 * 299.99749 * 1 2 3 28 28 H 1.08994 * 109.47072 * 60.00105 * 1 2 3 29 29 H 1.07998 * 119.40412 * 180.02562 * 5 4 3 30 30 H 1.07999 * 120.27426 * 179.97438 * 6 5 4 31 31 H 1.08001 * 120.81911 * 179.74404 * 7 6 5 32 32 H 1.08999 * 109.47140 * 220.44416 * 12 11 9 33 33 H 1.09002 * 109.46851 * 340.44365 * 12 11 9 34 34 H 0.97005 * 119.99836 * 179.97438 * 16 15 13 35 35 H 1.09009 * 109.47251 * 208.89689 * 21 11 9 36 36 H 1.09009 * 109.47114 * 328.88991 * 21 11 9 37 37 H 1.09005 * 109.47048 * 60.00053 * 23 22 21 38 38 H 1.08995 * 109.47125 * 179.97438 * 23 22 21 39 39 H 1.09006 * 109.47181 * 300.00151 * 23 22 21 40 40 H 1.08996 * 109.47420 * 60.00206 * 24 22 21 41 41 H 1.08995 * 109.47182 * 180.02562 * 24 22 21 42 42 H 1.09005 * 109.47237 * 300.00304 * 24 22 21 43 43 H 1.09001 * 109.47478 * 65.19586 * 25 22 21 44 44 H 1.09000 * 109.47580 * 185.20139 * 25 22 21 45 45 H 1.09007 * 109.47204 * 305.19695 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 -0.0005 5 6 1.8770 3.5084 -0.0010 6 6 3.2525 3.6576 -0.0005 7 6 4.0587 2.5334 -0.0048 8 6 3.4449 1.2753 0.0009 9 6 4.2569 0.0435 0.0015 10 8 3.8407 -0.9588 0.5494 11 7 5.4603 0.0296 -0.6053 12 6 6.0278 1.2717 -1.1357 13 6 7.0522 1.8086 -0.1697 14 1 7.2602 1.2775 0.7474 15 6 7.7241 2.9779 -0.4566 16 7 7.4712 3.6244 -1.5737 17 14 8.9945 3.6431 0.7405 18 1 9.0927 2.7365 1.9125 19 1 10.3149 3.7256 0.0659 20 1 8.5855 4.9964 1.1950 21 6 6.2009 -1.2278 -0.7346 22 6 5.7961 -1.9269 -2.0339 23 6 6.2207 -1.0696 -3.2279 24 6 6.4845 -3.2909 -2.1150 25 6 4.2785 -2.1193 -2.0582 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.2484 4.3866 -0.0010 30 1 3.6932 4.6436 -0.0014 31 1 5.1348 2.6242 -0.0087 32 1 6.5032 1.0729 -2.0962 33 1 5.2335 2.0063 -1.2685 34 1 7.9436 4.4473 -1.7754 35 1 7.2707 -1.0194 -0.7521 36 1 5.9705 -1.8739 0.1127 37 1 7.3020 -0.9325 -3.2106 38 1 5.9328 -1.5678 -4.1536 39 1 5.7303 -0.0978 -3.1702 40 1 6.1821 -3.9017 -1.2645 41 1 6.1965 -3.7887 -3.0409 42 1 7.5657 -3.1538 -2.0977 43 1 3.7893 -1.1458 -2.0936 44 1 3.9996 -2.6983 -2.9386 45 1 3.9652 -2.6509 -1.1596 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265247089.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:52 Heat of formation + Delta-G solvation = -37.790532 kcal Electronic energy + Delta-G solvation = -27051.063345 eV Core-core repulsion = 23455.305134 eV Total energy + Delta-G solvation = -3595.758211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.03626 -40.56041 -38.87769 -37.99604 -36.38591 -34.31514 -33.38046 -31.74725 -29.63400 -28.34844 -28.14201 -28.06964 -27.35197 -25.39379 -24.24696 -23.82965 -21.10494 -19.62399 -19.25804 -18.62850 -18.12346 -17.96975 -17.08500 -16.73295 -16.44308 -16.31733 -16.09662 -15.40383 -15.09213 -14.91309 -14.77304 -14.51403 -14.38191 -14.19231 -14.01944 -13.60554 -13.29332 -13.05970 -12.86429 -12.79003 -12.67120 -12.54813 -12.44390 -12.26858 -12.13930 -12.02590 -11.99940 -11.63897 -11.55592 -11.46319 -11.05121 -10.81986 -10.58695 -10.17879 -9.55748 -9.27315 -8.20761 -6.36709 -0.16933 0.32045 1.41182 1.46600 1.55707 1.93561 2.12390 2.30729 2.45082 2.85992 3.07042 3.32976 3.75915 3.90865 3.97158 4.03151 4.09609 4.14608 4.36253 4.42439 4.44970 4.52936 4.58833 4.65419 4.72631 4.75735 4.82310 4.90625 4.92645 4.95280 5.05519 5.07410 5.13070 5.20563 5.24127 5.30041 5.35068 5.48905 5.54399 5.55936 5.68639 5.89116 6.03823 6.25719 6.58760 6.75458 6.84249 7.30398 7.43387 8.82466 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.010084 B = 0.007393 C = 0.004744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.963841 B = 3786.697646 C = 5900.543549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.306 6.306 3 C 0.349 3.651 4 N -0.556 5.556 5 C 0.163 3.837 6 C -0.223 4.223 7 C -0.032 4.032 8 C -0.237 4.237 9 C 0.564 3.436 10 O -0.574 6.574 11 N -0.587 5.587 12 C 0.219 3.781 13 C -0.550 4.550 14 H 0.050 0.950 15 C 0.036 3.964 16 N -0.904 5.904 17 Si 0.949 3.051 18 H -0.276 1.276 19 H -0.279 1.279 20 H -0.273 1.273 21 C 0.129 3.871 22 C -0.081 4.081 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.119 4.119 26 H 0.116 0.884 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.206 0.794 30 H 0.161 0.839 31 H 0.185 0.815 32 H 0.030 0.970 33 H 0.055 0.945 34 H 0.271 0.729 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.021 0.979 44 H 0.064 0.936 45 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.769 -3.034 -1.491 8.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.212 6.212 3 C 0.169 3.831 4 N -0.281 5.281 5 C 0.008 3.992 6 C -0.243 4.243 7 C -0.057 4.057 8 C -0.243 4.243 9 C 0.353 3.647 10 O -0.456 6.456 11 N -0.316 5.316 12 C 0.099 3.901 13 C -0.588 4.588 14 H 0.069 0.931 15 C -0.166 4.166 16 N -0.542 5.542 17 Si 0.775 3.225 18 H -0.201 1.201 19 H -0.204 1.204 20 H -0.198 1.198 21 C 0.006 3.994 22 C -0.082 4.082 23 C -0.191 4.191 24 C -0.186 4.186 25 C -0.176 4.176 26 H 0.134 0.866 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.223 0.777 30 H 0.179 0.821 31 H 0.201 0.799 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.718 -3.777 -1.335 9.594 hybrid contribution 1.527 0.788 0.543 1.802 sum -7.191 -2.989 -0.792 7.827 Atomic orbital electron populations 1.23107 0.75937 1.04435 1.02533 1.86395 1.24258 1.23991 1.86533 1.19867 0.87941 0.85591 0.89652 1.67485 1.39903 0.98780 1.21891 1.23284 0.93260 0.94071 0.88634 1.22283 0.94871 1.00304 1.06794 1.23378 1.04976 0.90595 0.86713 1.20085 0.91903 0.95761 1.16503 1.17957 0.81386 0.87057 0.78299 1.90647 1.72361 1.35854 1.46740 1.47935 1.17380 1.10332 1.55938 1.20113 0.94109 0.81451 0.94453 1.21588 1.22587 1.08589 1.06043 0.93146 1.25523 0.97996 0.96528 0.96597 1.70006 1.42421 1.17563 1.24202 0.85634 0.79231 0.78459 0.79169 1.20113 1.20422 1.19792 1.21485 0.95859 0.84624 0.97434 1.20942 0.95910 0.96567 0.94776 1.21891 1.00956 0.99017 0.97286 1.21726 1.00369 0.94096 1.02425 1.21687 0.94803 0.99901 1.01242 0.86568 0.92037 0.91912 0.77740 0.82130 0.79859 0.95190 0.92748 0.91926 0.90678 0.91839 0.92731 0.91513 0.94300 0.92545 0.91020 0.91849 0.95932 0.91715 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.91 10.38 113.37 1.18 2.09 16 2 O -0.31 -11.68 9.03 -69.43 -0.63 -12.30 16 3 C 0.35 13.70 7.48 85.13 0.64 14.34 16 4 N -0.56 -18.49 9.21 -307.99 -2.84 -21.33 16 5 C 0.16 4.57 11.17 84.71 0.95 5.51 16 6 C -0.22 -7.15 10.09 22.32 0.23 -6.93 16 7 C -0.03 -1.31 7.59 22.72 0.17 -1.14 16 8 C -0.24 -10.19 5.59 -19.91 -0.11 -10.30 16 9 C 0.56 25.93 5.53 86.69 0.48 26.41 16 10 O -0.57 -28.06 13.78 13.87 0.19 -27.87 16 11 N -0.59 -25.83 2.01 -829.92 -1.67 -27.50 16 12 C 0.22 10.27 4.00 85.63 0.34 10.61 16 13 C -0.55 -27.44 7.59 25.60 0.19 -27.25 16 14 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 15 C 0.04 1.78 5.37 84.65 0.45 2.23 16 16 N -0.90 -45.95 13.29 21.45 0.28 -45.67 16 17 Si 0.95 39.70 29.54 68.60 2.03 41.73 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 21 C 0.13 5.01 4.57 86.38 0.39 5.41 16 22 C -0.08 -2.64 0.85 -52.18 -0.04 -2.68 16 23 C -0.13 -4.38 7.53 71.98 0.54 -3.83 16 24 C -0.13 -3.28 8.47 71.98 0.61 -2.67 16 25 C -0.12 -4.10 7.13 71.98 0.51 -3.59 16 26 H 0.12 2.43 8.14 -2.38 -0.02 2.41 16 27 H 0.06 1.53 8.11 -2.38 -0.02 1.52 16 28 H 0.06 1.54 8.10 -2.39 -0.02 1.52 16 29 H 0.21 3.61 8.06 -2.91 -0.02 3.59 16 30 H 0.16 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.18 8.45 3.45 -2.91 -0.01 8.44 16 32 H 0.03 1.48 5.71 -2.39 -0.01 1.47 16 33 H 0.06 2.66 3.90 -2.60 -0.01 2.65 16 34 H 0.27 13.02 8.31 -92.70 -0.77 12.25 16 35 H 0.07 2.92 8.05 -2.38 -0.02 2.90 16 36 H 0.06 2.55 7.37 -2.38 -0.02 2.53 16 37 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.04 1.47 5.78 -2.38 -0.01 1.45 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 43 H 0.02 0.88 6.63 -2.39 -0.02 0.86 16 44 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.05 1.77 7.25 -2.38 -0.02 1.75 16 Total: -1.00 -61.61 355.08 4.89 -56.73 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.99 Total: 28.00 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 6.53 Total: 8.21 kcal Atomic # 7 Polarization: -90.27 SS G_CDS: -4.22 Total: -94.49 kcal Atomic # 8 Polarization: -39.74 SS G_CDS: -0.44 Total: -40.17 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -61.61 4.89 -56.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265247089.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.935 kcal (2) G-P(sol) polarization free energy of solvation -61.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds