Wall clock time and date at job start Tue Mar 31 2020 08:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47195 * 2 1 4 4 C 1.52997 * 109.47336 * 120.00051 * 2 1 3 5 5 C 1.52998 * 109.47228 * 175.00168 * 4 2 1 6 6 N 1.46501 * 109.47094 * 179.97438 * 5 4 2 7 7 C 1.46500 * 119.99997 * 274.90421 * 6 5 4 8 8 C 1.50699 * 109.46764 * 263.50268 * 7 6 5 9 9 H 1.07998 * 120.00279 * 0.02562 * 8 7 6 10 10 C 1.37886 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99827 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99842 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47137 * 90.00262 * 12 10 8 14 14 H 1.48505 * 109.47019 * 210.00053 * 12 10 8 15 15 H 1.48497 * 109.47234 * 330.00169 * 12 10 8 16 16 C 1.34779 * 119.99970 * 94.89880 * 6 5 4 17 17 O 1.21685 * 119.99907 * 4.29656 * 16 6 5 18 18 C 1.46718 * 120.00059 * 184.56305 * 16 6 5 19 19 O 1.35346 * 126.64587 * 353.23642 * 18 16 6 20 20 C 1.33662 * 107.68809 * 179.87145 * 19 18 16 21 21 N 1.30617 * 109.15151 * 0.39689 * 20 19 18 22 22 C 1.33694 * 108.99733 * 359.75622 * 21 20 19 23 23 C 1.50693 * 126.27412 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.49922 * 8.71570 * 23 22 21 25 25 C 1.53007 * 117.49883 * 300.05724 * 23 22 21 26 26 H 1.09003 * 109.47103 * 300.00255 * 1 2 3 27 27 H 1.09003 * 109.47431 * 60.00239 * 1 2 3 28 28 H 1.09003 * 109.47411 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47103 * 239.99744 * 2 1 3 30 30 H 1.09002 * 109.47003 * 299.99710 * 3 2 1 31 31 H 1.08990 * 109.47561 * 59.99991 * 3 2 1 32 32 H 1.09001 * 109.47327 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47274 * 54.99744 * 4 2 1 34 34 H 1.09004 * 109.47045 * 294.99931 * 4 2 1 35 35 H 1.08993 * 109.47614 * 59.99812 * 5 4 2 36 36 H 1.09006 * 109.47005 * 299.99308 * 5 4 2 37 37 H 1.08996 * 109.47371 * 23.50519 * 7 6 5 38 38 H 1.09000 * 109.47292 * 143.50740 * 7 6 5 39 39 H 0.96996 * 120.00362 * 179.97438 * 11 10 8 40 40 H 1.07998 * 125.42395 * 180.17258 * 20 19 18 41 41 H 1.09003 * 115.55470 * 154.38873 * 23 22 21 42 42 H 1.08998 * 117.49973 * 0.02562 * 24 23 22 43 43 H 1.08997 * 117.49810 * 145.02704 * 24 23 22 44 44 H 1.08994 * 117.50096 * 214.98298 * 25 23 22 45 45 H 1.09002 * 117.49462 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 7 4.0532 -1.5211 2.3844 7 6 4.2994 -0.7667 3.6159 8 6 5.7610 -0.4102 3.7028 9 1 6.4387 -0.7147 2.9190 10 6 6.2330 0.3056 4.7826 11 7 5.4077 0.6768 5.7369 12 14 8.0446 0.7481 4.8900 13 1 8.2730 2.0614 4.2357 14 1 8.4509 0.8284 6.3162 15 1 8.8502 -0.2936 4.2037 16 6 4.2760 -2.8499 2.3521 17 8 4.1467 -3.4634 1.3092 18 6 4.6686 -3.5578 3.5758 19 8 4.9688 -2.9990 4.7714 20 6 5.2708 -3.9884 5.6178 21 7 5.1775 -5.1311 4.9920 22 6 4.8076 -4.9057 3.7272 23 6 4.5843 -5.9500 2.6639 24 6 4.5966 -7.4164 3.1003 25 6 5.7676 -6.8472 2.2953 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7517 -0.1583 2.1370 35 1 3.9995 0.1675 1.1420 36 1 3.8532 -1.3940 0.3002 37 1 3.7027 0.1454 3.6087 38 1 4.0221 -1.3755 4.4765 39 1 5.7397 1.1800 6.4967 40 1 5.5512 -3.8628 6.6531 41 1 3.8983 -5.6684 1.8650 42 1 4.7658 -7.6258 4.1565 43 1 3.9190 -8.0996 2.5883 44 1 5.8599 -7.1561 1.2542 45 1 6.7077 -6.6817 2.8217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289220249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:36 Heat of formation + Delta-G solvation = -0.507269 kcal Electronic energy + Delta-G solvation = -26103.609459 eV Core-core repulsion = 22509.467971 eV Total energy + Delta-G solvation = -3594.141487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.84411 -39.07706 -37.18206 -36.57291 -34.88324 -33.73164 -32.59371 -30.35258 -28.95650 -27.13712 -26.94313 -24.49059 -23.23711 -23.17431 -22.32444 -21.97657 -20.17794 -19.76954 -19.09248 -16.98526 -16.58417 -16.33813 -15.92337 -15.63880 -15.16889 -14.96947 -14.49182 -14.26109 -14.16310 -13.81996 -13.51884 -13.15991 -12.73284 -12.50133 -12.35699 -12.10771 -11.75120 -11.73361 -11.50673 -11.37047 -11.22613 -11.17046 -10.92655 -10.86006 -10.71163 -10.53279 -10.34264 -10.30117 -10.18024 -10.10126 -10.05542 -9.75976 -9.39438 -8.56875 -8.35506 -7.77348 -6.19235 -4.24817 1.44462 2.86950 3.14827 3.20167 3.27495 3.32047 3.66971 3.87767 4.21528 4.32461 4.42164 4.84799 5.01650 5.04693 5.10370 5.14994 5.16739 5.26708 5.33806 5.57673 5.70069 5.72963 5.79461 5.82764 5.84972 5.91219 5.96950 5.97213 6.05508 6.08816 6.17973 6.20891 6.29907 6.34862 6.35608 6.48845 6.56563 6.61896 6.66371 6.69416 7.25444 7.42943 7.74062 8.01634 8.03257 8.18446 8.69238 8.83949 9.41096 10.88033 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.008223 B = 0.006727 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.214715 B = 4161.521544 C = 6836.288888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 C -0.150 4.150 4 C -0.128 4.128 5 C 0.117 3.883 6 N -0.583 5.583 7 C 0.232 3.768 8 C -0.529 4.529 9 H 0.057 0.943 10 C 0.069 3.931 11 N -0.890 5.890 12 Si 0.892 3.108 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.602 3.398 17 O -0.549 6.549 18 C -0.076 4.076 19 O -0.133 6.133 20 C 0.180 3.820 21 N -0.502 5.502 22 C 0.078 3.922 23 C -0.075 4.075 24 C -0.167 4.167 25 C -0.162 4.162 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.264 0.736 40 H 0.245 0.755 41 H 0.133 0.867 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.472 -5.731 -5.203 9.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.207 4.207 4 C -0.167 4.167 5 C -0.006 4.006 6 N -0.311 5.311 7 C 0.113 3.887 8 C -0.567 4.567 9 H 0.076 0.924 10 C -0.134 4.134 11 N -0.528 5.528 12 Si 0.719 3.281 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.389 3.611 17 O -0.431 6.431 18 C -0.132 4.132 19 O -0.015 6.015 20 C -0.045 4.045 21 N -0.232 5.232 22 C -0.047 4.047 23 C -0.094 4.094 24 C -0.205 4.205 25 C -0.199 4.199 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.261 0.739 41 H 0.151 0.849 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.425 -6.370 -5.231 9.867 hybrid contribution 1.070 1.192 0.300 1.629 sum -4.354 -5.178 -4.931 8.372 Atomic orbital electron populations 1.21823 0.95502 1.01480 1.01424 1.21040 0.95440 0.96390 0.98322 1.21907 1.01612 0.95809 1.01404 1.22007 0.96133 1.00588 0.97950 1.21468 0.93172 0.97838 0.88075 1.48193 1.61607 1.06442 1.14872 1.19687 0.97085 0.91821 0.80079 1.21374 0.93297 1.35434 1.06634 0.92443 1.24845 0.97785 0.95453 0.95277 1.69917 1.34697 1.38107 1.10119 0.86589 0.85140 0.78984 0.77353 1.20490 1.20993 1.19906 1.16457 0.77584 0.82262 0.84784 1.90737 1.55594 1.67401 1.29376 1.22846 1.10839 0.92536 0.87020 1.85153 1.62080 1.36092 1.18220 1.28167 0.97741 0.80292 0.98327 1.70142 1.19561 1.28195 1.05270 1.20832 1.00443 0.91484 0.91933 1.20362 1.03346 0.88266 0.97391 1.22962 1.01373 0.94828 1.01301 1.22912 0.93439 1.02937 1.00653 0.92753 0.93005 0.92891 0.91244 0.93183 0.92552 0.92110 0.92045 0.91557 0.90095 0.90428 0.94215 0.93184 0.92620 0.73885 0.84918 0.87998 0.88791 0.88474 0.88903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.19 37.16 0.34 -1.25 16 2 C -0.09 -1.16 2.92 -90.62 -0.26 -1.42 16 3 C -0.15 -1.80 8.95 37.16 0.33 -1.47 16 4 C -0.13 -1.96 5.01 -26.73 -0.13 -2.09 16 5 C 0.12 2.09 5.22 -4.04 -0.02 2.07 16 6 N -0.58 -12.34 2.47 -176.59 -0.44 -12.78 16 7 C 0.23 5.51 4.79 -5.19 -0.02 5.49 16 8 C -0.53 -13.72 8.51 -34.44 -0.29 -14.02 16 9 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 10 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 11 N -0.89 -23.97 13.29 55.43 0.74 -23.23 16 12 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.60 13.05 7.58 -12.83 -0.10 12.96 16 17 O -0.55 -12.03 14.43 5.20 0.08 -11.95 16 18 C -0.08 -1.60 6.77 -36.84 -0.25 -1.85 16 19 O -0.13 -2.81 6.87 4.42 0.03 -2.78 16 20 C 0.18 3.11 13.21 52.25 0.69 3.80 16 21 N -0.50 -9.11 10.89 -10.89 -0.12 -9.23 16 22 C 0.08 1.49 6.67 -82.47 -0.55 0.94 16 23 C -0.08 -1.25 5.56 -91.77 -0.51 -1.76 16 24 C -0.17 -2.27 10.15 -26.69 -0.27 -2.54 16 25 C -0.16 -2.31 10.24 -26.69 -0.27 -2.59 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.77 6.57 -51.93 -0.34 0.43 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.43 6.53 -51.93 -0.34 1.09 16 36 H 0.08 1.38 7.23 -51.93 -0.38 1.01 16 37 H 0.04 0.98 8.02 -51.93 -0.42 0.56 16 38 H 0.05 1.26 5.38 -51.93 -0.28 0.98 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.25 3.03 8.06 -52.49 -0.42 2.61 16 41 H 0.13 2.29 6.77 -51.93 -0.35 1.94 16 42 H 0.10 1.43 7.92 -51.93 -0.41 1.02 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 371.18 15.07 5.59 5.59 Total: -1.00 -29.22 371.18 -7.69 -36.92 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.13 Total: 3.96 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.42 Total: -2.02 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: 0.18 Total: -45.24 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.11 Total: -14.74 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.22 -7.69 -36.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289220249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.412 kcal (2) G-P(sol) polarization free energy of solvation -29.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds