Wall clock time and date at job start Tue Mar 31 2020 08:23:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47195 * 2 1 4 4 C 1.52997 * 109.47336 * 120.00051 * 2 1 3 5 5 C 1.52998 * 109.47228 * 175.00168 * 4 2 1 6 6 N 1.46501 * 109.47094 * 179.97438 * 5 4 2 7 7 C 1.46500 * 119.99997 * 274.90421 * 6 5 4 8 8 C 1.50699 * 109.46764 * 263.50268 * 7 6 5 9 9 H 1.07998 * 120.00279 * 0.02562 * 8 7 6 10 10 C 1.37886 * 119.99902 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99827 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99842 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47137 * 90.00262 * 12 10 8 14 14 H 1.48505 * 109.47019 * 210.00053 * 12 10 8 15 15 H 1.48497 * 109.47234 * 330.00169 * 12 10 8 16 16 C 1.34779 * 119.99970 * 94.89880 * 6 5 4 17 17 O 1.21685 * 119.99907 * 4.29656 * 16 6 5 18 18 C 1.46718 * 120.00059 * 184.56305 * 16 6 5 19 19 O 1.35346 * 126.64587 * 353.23642 * 18 16 6 20 20 C 1.33662 * 107.68809 * 179.87145 * 19 18 16 21 21 N 1.30617 * 109.15151 * 0.39689 * 20 19 18 22 22 C 1.33694 * 108.99733 * 359.75622 * 21 20 19 23 23 C 1.50693 * 126.27412 * 180.02562 * 22 21 20 24 24 C 1.53003 * 117.49922 * 8.71570 * 23 22 21 25 25 C 1.53007 * 117.49883 * 300.05724 * 23 22 21 26 26 H 1.09003 * 109.47103 * 300.00255 * 1 2 3 27 27 H 1.09003 * 109.47431 * 60.00239 * 1 2 3 28 28 H 1.09003 * 109.47411 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47103 * 239.99744 * 2 1 3 30 30 H 1.09002 * 109.47003 * 299.99710 * 3 2 1 31 31 H 1.08990 * 109.47561 * 59.99991 * 3 2 1 32 32 H 1.09001 * 109.47327 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47274 * 54.99744 * 4 2 1 34 34 H 1.09004 * 109.47045 * 294.99931 * 4 2 1 35 35 H 1.08993 * 109.47614 * 59.99812 * 5 4 2 36 36 H 1.09006 * 109.47005 * 299.99308 * 5 4 2 37 37 H 1.08996 * 109.47371 * 23.50519 * 7 6 5 38 38 H 1.09000 * 109.47292 * 143.50740 * 7 6 5 39 39 H 0.96996 * 120.00362 * 179.97438 * 11 10 8 40 40 H 1.07998 * 125.42395 * 180.17258 * 20 19 18 41 41 H 1.09003 * 115.55470 * 154.38873 * 23 22 21 42 42 H 1.08998 * 117.49973 * 0.02562 * 24 23 22 43 43 H 1.08997 * 117.49810 * 145.02704 * 24 23 22 44 44 H 1.08994 * 117.50096 * 214.98298 * 25 23 22 45 45 H 1.09002 * 117.49462 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 7 4.0532 -1.5211 2.3844 7 6 4.2994 -0.7667 3.6159 8 6 5.7610 -0.4102 3.7028 9 1 6.4387 -0.7147 2.9190 10 6 6.2330 0.3056 4.7826 11 7 5.4077 0.6768 5.7369 12 14 8.0446 0.7481 4.8900 13 1 8.2730 2.0614 4.2357 14 1 8.4509 0.8284 6.3162 15 1 8.8502 -0.2936 4.2037 16 6 4.2760 -2.8499 2.3521 17 8 4.1467 -3.4634 1.3092 18 6 4.6686 -3.5578 3.5758 19 8 4.9688 -2.9990 4.7714 20 6 5.2708 -3.9884 5.6178 21 7 5.1775 -5.1311 4.9920 22 6 4.8076 -4.9057 3.7272 23 6 4.5843 -5.9500 2.6639 24 6 4.5966 -7.4164 3.1003 25 6 5.7676 -6.8472 2.2953 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6054 -1.7198 1.2952 34 1 1.7517 -0.1583 2.1370 35 1 3.9995 0.1675 1.1420 36 1 3.8532 -1.3940 0.3002 37 1 3.7027 0.1454 3.6087 38 1 4.0221 -1.3755 4.4765 39 1 5.7397 1.1800 6.4967 40 1 5.5512 -3.8628 6.6531 41 1 3.8983 -5.6684 1.8650 42 1 4.7658 -7.6258 4.1565 43 1 3.9190 -8.0996 2.5883 44 1 5.8599 -7.1561 1.2542 45 1 6.7077 -6.6817 2.8217 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289220249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:23:35 Heat of formation + Delta-G solvation = -17.003290 kcal Electronic energy + Delta-G solvation = -26104.324780 eV Core-core repulsion = 22509.467971 eV Total energy + Delta-G solvation = -3594.856809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.33300 -40.70737 -38.46598 -37.82668 -36.45894 -35.19269 -34.51096 -31.81169 -30.43193 -28.85255 -27.98738 -25.90762 -25.06863 -24.56830 -23.70229 -23.16891 -21.57377 -20.89336 -20.65380 -18.81589 -18.24980 -17.80323 -17.57389 -17.21973 -16.46793 -16.39430 -16.12287 -15.62988 -15.51052 -15.15565 -14.71996 -14.56450 -14.35214 -14.18054 -13.72657 -13.41431 -13.16209 -12.99866 -12.89828 -12.82200 -12.70864 -12.59623 -12.37325 -12.31847 -12.11898 -11.91826 -11.76670 -11.64253 -11.59040 -11.50362 -11.41697 -11.36241 -10.94005 -10.58106 -9.88406 -9.43514 -8.19776 -6.32155 -0.08415 1.36930 1.39747 1.44667 1.48651 1.67919 2.06118 2.27527 2.43883 2.99088 3.10867 3.11962 3.55320 3.65414 3.90894 3.96438 3.99640 4.06429 4.16013 4.29280 4.41211 4.53317 4.58435 4.65032 4.71233 4.74176 4.76409 4.82693 4.86572 4.92211 4.94306 5.04269 5.10985 5.13579 5.17848 5.23038 5.29858 5.31263 5.40224 5.47303 5.51863 5.63429 5.76711 6.04757 6.34235 6.60458 6.77669 7.08009 7.37113 8.86600 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.008223 B = 0.006727 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3404.214715 B = 4161.521544 C = 6836.288888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.117 4.117 5 C 0.115 3.885 6 N -0.588 5.588 7 C 0.251 3.749 8 C -0.536 4.536 9 H 0.040 0.960 10 C 0.033 3.967 11 N -0.912 5.912 12 Si 0.947 3.053 13 H -0.274 1.274 14 H -0.275 1.275 15 H -0.280 1.280 16 C 0.597 3.403 17 O -0.559 6.559 18 C -0.120 4.120 19 O -0.160 6.160 20 C 0.193 3.807 21 N -0.509 5.509 22 C 0.090 3.910 23 C -0.109 4.109 24 C -0.141 4.141 25 C -0.153 4.153 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.038 0.962 39 H 0.268 0.732 40 H 0.288 0.712 41 H 0.123 0.877 42 H 0.098 0.902 43 H 0.122 0.878 44 H 0.118 0.882 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 -6.493 -5.386 9.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.156 4.156 5 C -0.007 4.007 6 N -0.317 5.317 7 C 0.131 3.869 8 C -0.575 4.575 9 H 0.058 0.942 10 C -0.168 4.168 11 N -0.551 5.551 12 Si 0.773 3.227 13 H -0.200 1.200 14 H -0.200 1.200 15 H -0.205 1.205 16 C 0.385 3.615 17 O -0.443 6.443 18 C -0.176 4.176 19 O -0.044 6.044 20 C -0.031 4.031 21 N -0.238 5.238 22 C -0.035 4.035 23 C -0.128 4.128 24 C -0.178 4.178 25 C -0.190 4.190 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.303 0.697 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.141 0.859 44 H 0.136 0.864 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.239 -7.135 -5.432 10.386 hybrid contribution 1.023 1.355 0.399 1.744 sum -4.217 -5.780 -5.033 8.748 Atomic orbital electron populations 1.21795 0.93966 1.01842 1.02292 1.21031 0.96676 0.96312 0.96762 1.21892 1.00933 0.95569 1.02172 1.21908 0.94132 1.00347 0.99188 1.21631 0.94869 0.97304 0.86864 1.48204 1.61952 1.06514 1.14982 1.19278 0.95730 0.91036 0.80885 1.21433 0.94027 1.35659 1.06369 0.94155 1.25440 1.01187 0.95259 0.94900 1.69990 1.36174 1.38473 1.10500 0.85726 0.80807 0.78507 0.77628 1.19962 1.19974 1.20527 1.16622 0.77392 0.82299 0.85190 1.90702 1.56259 1.67487 1.29806 1.22833 1.14136 0.93351 0.87249 1.85098 1.63024 1.37533 1.18765 1.29261 0.95149 0.79391 0.99315 1.70206 1.20336 1.28386 1.04878 1.21281 0.98135 0.91389 0.92650 1.20445 1.05413 0.89531 0.97417 1.23050 1.00863 0.92527 1.01357 1.23005 0.92642 1.01363 1.02026 0.92919 0.91100 0.92821 0.90676 0.91065 0.93117 0.93168 0.92922 0.92636 0.90267 0.90488 0.95666 0.94398 0.92284 0.69699 0.85931 0.88311 0.85942 0.86373 0.89685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.19 71.98 0.66 -2.25 16 2 C -0.09 -2.16 2.92 -10.80 -0.03 -2.19 16 3 C -0.15 -3.46 8.95 71.98 0.64 -2.81 16 4 C -0.12 -3.66 5.01 30.59 0.15 -3.51 16 5 C 0.12 4.25 5.22 86.38 0.45 4.70 16 6 N -0.59 -25.90 2.47 -830.84 -2.06 -27.96 16 7 C 0.25 12.34 4.79 85.63 0.41 12.75 16 8 C -0.54 -28.44 8.51 25.60 0.22 -28.23 16 9 H 0.04 2.24 7.81 -2.91 -0.02 2.22 16 10 C 0.03 1.73 5.46 84.66 0.46 2.19 16 11 N -0.91 -49.26 13.29 21.45 0.28 -48.98 16 12 Si 0.95 41.99 29.54 68.60 2.03 44.01 16 13 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 C 0.60 26.79 7.58 86.46 0.66 27.45 16 17 O -0.56 -25.19 14.43 -4.30 -0.06 -25.26 16 18 C -0.12 -5.20 6.77 24.04 0.16 -5.04 16 19 O -0.16 -6.89 6.87 -7.09 -0.05 -6.94 16 20 C 0.19 6.53 13.21 130.42 1.72 8.25 16 21 N -0.51 -18.03 10.89 -303.14 -3.30 -21.33 16 22 C 0.09 3.45 6.67 41.83 0.28 3.73 16 23 C -0.11 -3.58 5.56 -11.54 -0.06 -3.64 16 24 C -0.14 -3.50 10.15 30.62 0.31 -3.19 16 25 C -0.15 -4.10 10.24 30.62 0.31 -3.79 16 26 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.05 1.26 6.57 -2.39 -0.02 1.24 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 2.91 6.53 -2.39 -0.02 2.89 16 36 H 0.08 2.82 7.23 -2.38 -0.02 2.81 16 37 H 0.03 1.30 8.02 -2.39 -0.02 1.28 16 38 H 0.04 1.99 5.38 -2.39 -0.01 1.97 16 39 H 0.27 13.67 8.31 -92.71 -0.77 12.90 16 40 H 0.29 6.48 8.06 -2.91 -0.02 6.46 16 41 H 0.12 4.25 6.77 -2.39 -0.02 4.23 16 42 H 0.10 2.55 7.92 -2.39 -0.02 2.53 16 43 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 44 H 0.12 2.65 8.14 -2.39 -0.02 2.63 16 45 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -63.21 371.18 4.17 -59.04 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.97 Total: 22.98 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 6.35 Total: 4.43 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -5.07 Total: -98.27 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.11 Total: -32.19 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -63.21 4.17 -59.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289220249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.038 kcal (2) G-P(sol) polarization free energy of solvation -63.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds