Wall clock time and date at job start Tue Mar 31 2020 09:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47484 * 2 1 4 4 C 1.53010 * 109.46645 * 240.00199 * 2 1 3 5 5 O 1.42899 * 109.47274 * 120.00573 * 2 1 3 6 6 C 1.35729 * 117.00068 * 62.85376 * 5 2 1 7 7 C 1.39227 * 120.38020 * 175.77836 * 6 5 2 8 8 C 1.38322 * 118.44072 * 180.02562 * 7 6 5 9 9 C 1.39462 * 119.13767 * 0.02562 * 8 7 6 10 10 C 1.47929 * 119.66198 * 179.97438 * 9 8 7 11 11 O 1.21545 * 119.99467 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00143 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99936 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47285 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47196 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46941 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00223 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99951 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47263 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47084 * 120.00137 * 20 18 16 23 23 H 1.48491 * 109.47453 * 240.00155 * 20 18 16 24 24 N 1.32800 * 120.68310 * 359.97438 * 9 8 7 25 25 C 1.31378 * 121.69435 * 0.04311 * 24 9 8 26 26 H 1.09003 * 109.46603 * 317.55631 * 1 2 3 27 27 H 1.08997 * 109.47396 * 77.55511 * 1 2 3 28 28 H 1.08998 * 109.47285 * 197.55556 * 1 2 3 29 29 H 1.08998 * 109.47082 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47328 * 300.00296 * 3 2 1 31 31 H 1.09001 * 109.46954 * 60.00518 * 3 2 1 32 32 H 1.09002 * 109.47019 * 288.46117 * 4 2 1 33 33 H 1.08998 * 109.47205 * 48.46558 * 4 2 1 34 34 H 1.08999 * 109.46913 * 168.46214 * 4 2 1 35 35 H 1.07998 * 120.78245 * 359.97438 * 7 6 5 36 36 H 1.08003 * 120.42977 * 179.72302 * 8 7 6 37 37 H 0.96997 * 119.99769 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47598 * 300.00600 * 13 12 10 39 39 H 1.09001 * 109.46948 * 60.00541 * 13 12 10 40 40 H 1.08993 * 109.46935 * 300.00829 * 14 13 12 41 41 H 1.09001 * 109.46554 * 60.00461 * 14 13 12 42 42 H 1.08996 * 109.47580 * 300.00696 * 15 14 13 43 43 H 1.09001 * 109.47055 * 60.00691 * 15 14 13 44 44 H 0.97003 * 120.00337 * 179.97438 * 19 18 16 45 45 H 1.08001 * 119.59911 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2494 5 8 2.0063 -0.6737 1.1667 6 6 1.6915 -1.9882 1.2909 7 6 2.1921 -2.7346 2.3542 8 6 1.8460 -4.0710 2.4415 9 6 1.0134 -4.6219 1.4677 10 6 0.6364 -6.0500 1.5495 11 8 1.0524 -6.7370 2.4618 12 7 -0.1682 -6.5893 0.6124 13 6 -0.5411 -8.0037 0.6931 14 6 -1.4539 -8.3584 -0.4825 15 6 -1.8438 -9.8354 -0.3978 16 6 -2.7424 -10.1849 -1.5560 17 1 -3.0084 -9.4292 -2.2803 18 6 -3.2250 -11.4694 -1.6911 19 7 -2.9015 -12.3895 -0.8089 20 14 -4.3394 -11.9024 -3.1263 21 1 -4.5507 -10.6986 -3.9698 22 1 -3.7061 -12.9713 -3.9399 23 1 -5.6468 -12.3818 -2.6108 24 7 0.5555 -3.8776 0.4677 25 6 0.8654 -2.6059 0.3557 26 1 -0.3633 0.7584 0.6936 27 1 -0.3634 0.2215 -1.0035 28 1 -0.3634 -0.9798 0.3100 29 1 3.1300 1.4423 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.8541 -1.7910 -1.1526 33 1 1.5185 -0.3399 -2.1273 34 1 3.1103 -0.5467 -1.3582 35 1 2.8362 -2.2812 3.0931 36 1 2.2198 -4.6811 3.2506 37 1 -0.4998 -6.0410 -0.1158 38 1 0.3576 -8.6192 0.6543 39 1 -1.0674 -8.1878 1.6297 40 1 -2.3525 -7.7429 -0.4432 41 1 -0.9280 -8.1742 -1.4193 42 1 -0.9454 -10.4513 -0.4367 43 1 -2.3700 -10.0192 0.5389 44 1 -3.2412 -13.2931 -0.9036 45 1 0.4742 -2.0323 -0.4716 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293040887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:17 Heat of formation + Delta-G solvation = -40.838358 kcal Electronic energy + Delta-G solvation = -24235.265362 eV Core-core repulsion = 20639.374988 eV Total energy + Delta-G solvation = -3595.890375 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.62415 -39.83951 -38.36442 -35.40784 -34.91332 -33.32300 -32.42924 -31.55876 -30.68859 -28.09860 -28.01306 -26.80087 -24.57585 -23.98708 -22.85806 -21.10737 -20.72652 -20.31568 -17.99657 -17.72907 -17.57333 -16.36115 -15.99273 -15.51776 -15.39691 -15.37625 -14.76583 -14.72007 -14.43608 -14.28724 -13.87996 -13.65633 -13.62527 -13.16384 -12.90447 -12.80717 -12.56742 -12.27695 -12.26164 -12.16322 -11.79819 -11.68695 -11.35337 -11.19182 -10.90030 -10.70465 -10.55599 -10.21990 -10.07937 -9.82873 -9.77785 -9.35874 -9.07634 -8.86398 -8.59898 -8.35053 -5.99502 -4.02190 0.48522 0.86359 2.54824 2.72467 3.31744 3.32545 3.39254 3.43257 3.70456 3.98681 4.04172 4.16150 4.22106 4.30164 4.46442 4.58373 4.70982 4.90271 4.92926 4.95249 5.09453 5.12782 5.22671 5.24109 5.32934 5.36338 5.48754 5.51232 5.63641 5.64610 5.66872 5.81253 5.82091 6.10547 6.20842 6.52341 6.64492 6.79716 6.87827 7.03946 7.39317 7.66970 7.79600 7.81651 7.99743 8.37125 8.42196 9.04732 9.61804 11.11851 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.002265 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.779243 B =12357.393351 C =13441.827414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.104 3.896 3 C -0.137 4.137 4 C -0.204 4.204 5 O -0.297 6.297 6 C 0.103 3.897 7 C -0.121 4.121 8 C -0.070 4.070 9 C 0.041 3.959 10 C 0.567 3.433 11 O -0.541 6.541 12 N -0.705 5.705 13 C 0.114 3.886 14 C -0.121 4.121 15 C 0.023 3.977 16 C -0.520 4.520 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.422 5.422 25 C 0.002 3.998 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.408 0.592 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.260 0.740 45 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.997 29.795 2.375 31.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.067 3.933 3 C -0.194 4.194 4 C -0.261 4.261 5 O -0.210 6.210 6 C 0.055 3.945 7 C -0.147 4.147 8 C -0.091 4.091 9 C -0.097 4.097 10 C 0.351 3.649 11 O -0.418 6.418 12 N -0.355 5.355 13 C -0.008 4.008 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.559 4.559 17 H 0.074 0.926 18 C -0.146 4.146 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.134 5.134 25 C -0.159 4.159 26 H 0.090 0.910 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.244 0.756 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 10.823 28.810 2.579 30.884 hybrid contribution -0.356 0.346 -0.687 0.847 sum 10.467 29.155 1.892 31.035 Atomic orbital electron populations 1.22905 0.94359 1.04545 1.04023 1.21955 0.94212 0.93363 0.83781 1.21809 1.02300 0.91990 1.03292 1.22954 1.03077 1.02711 0.97366 1.86135 1.72380 1.18960 1.43489 1.20236 0.94361 0.84561 0.95387 1.20921 1.02372 0.93104 0.98353 1.21990 0.94412 0.94140 0.98527 1.21182 0.99735 0.95043 0.93733 1.17754 0.79319 0.85233 0.82565 1.90786 1.55217 1.61475 1.34369 1.46062 1.48602 1.12859 1.27929 1.21723 0.99418 0.78945 1.00711 1.21891 0.97314 1.01424 0.95258 1.19039 0.96712 0.88199 0.97487 1.21249 1.29390 0.95290 1.09937 0.92569 1.25037 0.96594 0.96583 0.96354 1.69975 1.45141 1.02840 1.35351 0.86524 0.80489 0.78384 0.82520 1.19759 1.21029 1.21023 1.67496 1.19356 1.05814 1.20755 1.23731 0.99528 0.91931 1.00682 0.91033 0.90244 0.90108 0.91345 0.90068 0.91313 0.89927 0.90212 0.91100 0.83349 0.82654 0.75642 0.91524 0.91525 0.92633 0.92636 0.96237 0.96229 0.93013 0.79919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.08 8.12 37.16 0.30 -0.78 16 2 C 0.10 0.62 1.11 -90.62 -0.10 0.52 16 3 C -0.14 -0.58 8.74 37.15 0.32 -0.25 16 4 C -0.20 -1.12 8.08 37.16 0.30 -0.82 16 5 O -0.30 -2.50 9.79 -18.89 -0.19 -2.68 16 6 C 0.10 0.98 6.09 -38.84 -0.24 0.74 16 7 C -0.12 -1.15 10.12 -39.18 -0.40 -1.54 16 8 C -0.07 -0.79 9.62 -39.09 -0.38 -1.17 16 9 C 0.04 0.56 6.74 -83.02 -0.56 0.00 16 10 C 0.57 9.34 7.80 -12.29 -0.10 9.25 16 11 O -0.54 -10.40 16.31 5.33 0.09 -10.31 16 12 N -0.70 -11.39 5.54 -61.22 -0.34 -11.73 16 13 C 0.11 2.11 5.67 -4.04 -0.02 2.09 16 14 C -0.12 -2.45 5.27 -26.73 -0.14 -2.59 16 15 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 16 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 N -0.42 -5.24 9.52 -9.68 -0.09 -5.34 16 25 C 0.00 0.02 6.93 -17.38 -0.12 -0.10 16 26 H 0.07 0.36 8.02 -51.93 -0.42 -0.05 16 27 H 0.08 0.30 7.85 -51.93 -0.41 -0.11 16 28 H 0.08 0.54 4.74 -51.93 -0.25 0.30 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.57 4.48 -51.93 -0.23 0.33 16 33 H 0.08 0.31 7.90 -51.93 -0.41 -0.10 16 34 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.16 1.65 7.63 -52.48 -0.40 1.25 16 37 H 0.41 5.92 7.79 -40.82 -0.32 5.60 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.18 1.41 3.60 -52.49 -0.19 1.22 16 LS Contribution 366.63 15.07 5.53 5.53 Total: -1.00 -33.05 366.63 -7.77 -40.82 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -6.81 Total: 1.07 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.67 Total: -7.72 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.30 Total: -43.37 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.10 Total: -12.99 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.05 -7.77 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293040887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.021 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds