Wall clock time and date at job start Tue Mar 31 2020 09:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47484 * 2 1 4 4 C 1.53010 * 109.46645 * 240.00199 * 2 1 3 5 5 O 1.42899 * 109.47274 * 120.00573 * 2 1 3 6 6 C 1.35729 * 117.00068 * 62.85376 * 5 2 1 7 7 C 1.39227 * 120.38020 * 175.77836 * 6 5 2 8 8 C 1.38322 * 118.44072 * 180.02562 * 7 6 5 9 9 C 1.39462 * 119.13767 * 0.02562 * 8 7 6 10 10 C 1.47929 * 119.66198 * 179.97438 * 9 8 7 11 11 O 1.21545 * 119.99467 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00143 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99936 * 179.97438 * 12 10 9 14 14 C 1.53004 * 109.47285 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47196 * 180.02562 * 14 13 12 16 16 C 1.50697 * 109.46941 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00223 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99951 * 180.02562 * 16 15 14 19 19 N 1.31508 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47263 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47084 * 120.00137 * 20 18 16 23 23 H 1.48491 * 109.47453 * 240.00155 * 20 18 16 24 24 N 1.32800 * 120.68310 * 359.97438 * 9 8 7 25 25 C 1.31378 * 121.69435 * 0.04311 * 24 9 8 26 26 H 1.09003 * 109.46603 * 317.55631 * 1 2 3 27 27 H 1.08997 * 109.47396 * 77.55511 * 1 2 3 28 28 H 1.08998 * 109.47285 * 197.55556 * 1 2 3 29 29 H 1.08998 * 109.47082 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47328 * 300.00296 * 3 2 1 31 31 H 1.09001 * 109.46954 * 60.00518 * 3 2 1 32 32 H 1.09002 * 109.47019 * 288.46117 * 4 2 1 33 33 H 1.08998 * 109.47205 * 48.46558 * 4 2 1 34 34 H 1.08999 * 109.46913 * 168.46214 * 4 2 1 35 35 H 1.07998 * 120.78245 * 359.97438 * 7 6 5 36 36 H 1.08003 * 120.42977 * 179.72302 * 8 7 6 37 37 H 0.96997 * 119.99769 * 0.02562 * 12 10 9 38 38 H 1.08996 * 109.47598 * 300.00600 * 13 12 10 39 39 H 1.09001 * 109.46948 * 60.00541 * 13 12 10 40 40 H 1.08993 * 109.46935 * 300.00829 * 14 13 12 41 41 H 1.09001 * 109.46554 * 60.00461 * 14 13 12 42 42 H 1.08996 * 109.47580 * 300.00696 * 15 14 13 43 43 H 1.09001 * 109.47055 * 60.00691 * 15 14 13 44 44 H 0.97003 * 120.00337 * 179.97438 * 19 18 16 45 45 H 1.08001 * 119.59911 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2494 5 8 2.0063 -0.6737 1.1667 6 6 1.6915 -1.9882 1.2909 7 6 2.1921 -2.7346 2.3542 8 6 1.8460 -4.0710 2.4415 9 6 1.0134 -4.6219 1.4677 10 6 0.6364 -6.0500 1.5495 11 8 1.0524 -6.7370 2.4618 12 7 -0.1682 -6.5893 0.6124 13 6 -0.5411 -8.0037 0.6931 14 6 -1.4539 -8.3584 -0.4825 15 6 -1.8438 -9.8354 -0.3978 16 6 -2.7424 -10.1849 -1.5560 17 1 -3.0084 -9.4292 -2.2803 18 6 -3.2250 -11.4694 -1.6911 19 7 -2.9015 -12.3895 -0.8089 20 14 -4.3394 -11.9024 -3.1263 21 1 -4.5507 -10.6986 -3.9698 22 1 -3.7061 -12.9713 -3.9399 23 1 -5.6468 -12.3818 -2.6108 24 7 0.5555 -3.8776 0.4677 25 6 0.8654 -2.6059 0.3557 26 1 -0.3633 0.7584 0.6936 27 1 -0.3634 0.2215 -1.0035 28 1 -0.3634 -0.9798 0.3100 29 1 3.1300 1.4423 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.8541 -1.7910 -1.1526 33 1 1.5185 -0.3399 -2.1273 34 1 3.1103 -0.5467 -1.3582 35 1 2.8362 -2.2812 3.0931 36 1 2.2198 -4.6811 3.2506 37 1 -0.4998 -6.0410 -0.1158 38 1 0.3576 -8.6192 0.6543 39 1 -1.0674 -8.1878 1.6297 40 1 -2.3525 -7.7429 -0.4432 41 1 -0.9280 -8.1742 -1.4193 42 1 -0.9454 -10.4513 -0.4367 43 1 -2.3700 -10.0192 0.5389 44 1 -3.2412 -13.2931 -0.9036 45 1 0.4742 -2.0323 -0.4716 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293040887.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:03:16 Heat of formation + Delta-G solvation = -62.577177 kcal Electronic energy + Delta-G solvation = -24236.208028 eV Core-core repulsion = 20639.374988 eV Total energy + Delta-G solvation = -3596.833041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.37145 -40.90632 -39.33919 -37.01560 -35.50861 -35.19306 -33.35473 -33.03787 -31.83595 -28.86408 -28.41932 -28.29425 -25.85421 -24.76753 -24.41796 -22.31670 -21.83515 -21.59224 -19.13708 -18.52830 -18.40187 -18.30827 -16.87227 -16.80599 -16.50082 -16.39695 -16.30170 -15.69299 -15.46436 -15.29147 -15.07642 -14.44379 -14.31647 -14.21974 -14.00487 -13.79046 -13.75324 -13.41545 -13.14235 -12.99074 -12.77602 -12.75140 -12.65183 -12.55970 -12.35517 -11.85813 -11.75949 -11.69292 -11.58997 -11.29003 -11.13741 -10.88265 -10.62714 -10.55771 -10.19078 -9.49169 -8.19223 -6.30515 -0.42623 0.07086 1.41894 1.42167 1.55602 1.61832 1.93078 2.09240 2.42766 2.71999 3.07364 3.14373 3.39535 3.60867 3.74952 3.75402 3.89961 3.90187 4.11672 4.16614 4.19639 4.43285 4.51412 4.53097 4.54509 4.72780 4.73529 4.81024 4.86148 4.89616 4.90988 4.92775 4.98877 5.13089 5.15745 5.25358 5.28354 5.32475 5.38587 5.52168 5.70484 5.84244 6.14978 6.22459 6.35758 6.68824 6.86621 7.10823 7.38769 8.93089 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.021670 B = 0.002265 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.779243 B =12357.393351 C =13441.827414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.096 3.904 3 C -0.135 4.135 4 C -0.203 4.203 5 O -0.301 6.301 6 C 0.114 3.886 7 C -0.120 4.120 8 C -0.069 4.069 9 C 0.014 3.986 10 C 0.566 3.434 11 O -0.576 6.576 12 N -0.699 5.699 13 C 0.128 3.872 14 C -0.102 4.102 15 C 0.024 3.976 16 C -0.540 4.540 17 H 0.065 0.935 18 C -0.005 4.005 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.259 1.259 22 H -0.279 1.279 23 H -0.279 1.279 24 N -0.435 5.435 25 C 0.005 3.995 26 H 0.074 0.926 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.175 0.825 36 H 0.157 0.843 37 H 0.417 0.583 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.066 0.934 42 H -0.006 1.006 43 H -0.006 1.006 44 H 0.263 0.737 45 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.804 32.702 0.749 34.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.059 3.941 3 C -0.192 4.192 4 C -0.260 4.260 5 O -0.213 6.213 6 C 0.064 3.936 7 C -0.145 4.145 8 C -0.090 4.090 9 C -0.123 4.123 10 C 0.353 3.647 11 O -0.456 6.456 12 N -0.349 5.349 13 C 0.004 3.996 14 C -0.140 4.140 15 C -0.014 4.014 16 C -0.578 4.578 17 H 0.083 0.917 18 C -0.202 4.202 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.183 1.183 22 H -0.205 1.205 23 H -0.205 1.205 24 N -0.147 5.147 25 C -0.157 4.157 26 H 0.093 0.907 27 H 0.117 0.883 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.192 0.808 36 H 0.175 0.825 37 H 0.255 0.745 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.013 0.987 43 H 0.013 0.987 44 H 0.072 0.928 45 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 10.632 31.752 0.940 33.498 hybrid contribution -0.243 -0.389 -0.185 0.495 sum 10.389 31.363 0.756 33.048 Atomic orbital electron populations 1.22912 0.93801 1.03779 1.05306 1.22274 0.94732 0.94058 0.83027 1.21854 1.02283 0.90807 1.04286 1.22957 1.03445 1.01684 0.97945 1.86158 1.72224 1.18147 1.44792 1.20327 0.93291 0.85133 0.94832 1.21165 1.02272 0.92244 0.98869 1.22037 0.93932 0.95054 0.98010 1.20778 1.02174 0.93623 0.95700 1.18198 0.78401 0.86475 0.81664 1.90754 1.56475 1.62757 1.35646 1.45871 1.48802 1.11792 1.28478 1.21353 0.98423 0.80420 0.99394 1.21602 0.98188 0.97761 0.96433 1.18944 0.95096 0.91500 0.95821 1.21696 1.29656 0.95822 1.10613 0.91650 1.26037 0.98261 0.96545 0.99381 1.70116 1.46517 1.03356 1.37486 0.85345 0.78110 0.78465 0.78784 1.18278 1.20515 1.20513 1.67415 1.19864 1.06835 1.20607 1.24128 0.99158 0.91125 1.01250 0.90715 0.88332 0.91537 0.91443 0.88089 0.91340 0.91370 0.88228 0.91066 0.80780 0.82498 0.74520 0.92604 0.92621 0.91533 0.91522 0.98749 0.98749 0.92798 0.77821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 8.12 71.98 0.58 -1.03 16 2 C 0.10 0.88 1.11 -10.79 -0.01 0.87 16 3 C -0.14 -0.76 8.74 71.98 0.63 -0.13 16 4 C -0.20 -1.70 8.08 71.99 0.58 -1.12 16 5 O -0.30 -4.36 9.79 -90.52 -0.89 -5.25 16 6 C 0.11 1.95 6.09 22.75 0.14 2.09 16 7 C -0.12 -2.07 10.12 22.53 0.23 -1.84 16 8 C -0.07 -1.55 9.62 22.58 0.22 -1.33 16 9 C 0.01 0.38 6.74 41.86 0.28 0.66 16 10 C 0.57 19.08 7.80 86.81 0.68 19.76 16 11 O -0.58 -22.94 16.31 -3.86 -0.06 -23.01 16 12 N -0.70 -22.84 5.54 -465.89 -2.58 -25.42 16 13 C 0.13 4.83 5.67 86.38 0.49 5.32 16 14 C -0.10 -4.15 5.27 30.59 0.16 -3.99 16 15 C 0.02 1.28 4.97 29.85 0.15 1.43 16 16 C -0.54 -30.70 9.11 25.60 0.23 -30.47 16 17 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 18 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 19 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 20 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 N -0.43 -10.48 9.52 -184.53 -1.76 -12.24 16 25 C 0.01 0.09 6.93 85.00 0.59 0.68 16 26 H 0.07 0.57 8.02 -2.39 -0.02 0.55 16 27 H 0.10 0.42 7.85 -2.39 -0.02 0.40 16 28 H 0.07 0.75 4.74 -2.39 -0.01 0.74 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.79 4.48 -2.39 -0.01 0.78 16 33 H 0.10 0.44 7.90 -2.39 -0.02 0.42 16 34 H 0.07 0.60 8.10 -2.39 -0.02 0.58 16 35 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.16 3.36 7.63 -2.91 -0.02 3.34 16 37 H 0.42 11.96 7.79 -92.71 -0.72 11.24 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 42 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 43 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 44 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 45 H 0.21 2.73 3.60 -2.91 -0.01 2.72 16 Total: -1.00 -72.18 366.63 2.71 -69.47 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.28 Total: 16.33 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 5.41 Total: -8.92 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -4.06 Total: -95.04 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.95 Total: -28.25 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -72.18 2.71 -69.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293040887.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.892 kcal (2) G-P(sol) polarization free energy of solvation -72.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds