Wall clock time and date at job start Tue Mar 31 2020 09:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46910 * 2 1 4 4 H 1.08997 * 109.47352 * 54.99919 * 3 2 1 5 5 N 1.46498 * 109.46802 * 294.99409 * 3 2 1 6 6 C 1.34784 * 119.99538 * 85.00282 * 5 3 2 7 7 O 1.21580 * 120.00379 * 359.97438 * 6 5 3 8 8 N 1.34779 * 119.99802 * 180.27214 * 6 5 3 9 9 C 1.39239 * 120.00118 * 175.43391 * 8 6 5 10 10 C 1.39484 * 119.83579 * 215.01789 * 9 8 6 11 11 C 1.36376 * 120.16664 * 179.76016 * 10 9 8 12 12 C 1.40866 * 119.82922 * 0.51810 * 11 10 9 13 13 C 1.41159 * 120.16164 * 179.71916 * 12 11 10 14 14 H 1.08000 * 119.99362 * 214.80356 * 13 12 11 15 15 C 1.39891 * 119.99913 * 34.80685 * 13 12 11 16 16 N 1.30878 * 120.00190 * 355.55267 * 15 13 12 17 17 Si 1.86805 * 119.99722 * 175.55733 * 15 13 12 18 18 H 1.48504 * 109.47034 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46911 * 119.99537 * 17 15 13 20 20 H 1.48493 * 109.47174 * 239.99886 * 17 15 13 21 21 C 1.40865 * 119.67178 * 359.73726 * 12 11 10 22 22 C 1.36377 * 119.83292 * 0.02562 * 21 12 11 23 23 C 1.53000 * 109.46992 * 174.99640 * 3 2 1 24 24 C 1.52999 * 109.47157 * 179.97438 * 23 3 2 25 25 C 1.52997 * 109.47222 * 299.99944 * 23 3 2 26 26 O 1.42911 * 109.46889 * 60.00008 * 23 3 2 27 27 H 1.08999 * 109.47415 * 60.00623 * 1 2 3 28 28 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47293 * 300.00155 * 1 2 3 30 30 H 1.09000 * 109.47293 * 239.99845 * 2 1 3 31 31 H 1.09003 * 109.46980 * 119.99162 * 2 1 3 32 32 H 0.96998 * 120.00306 * 264.99956 * 5 3 2 33 33 H 0.97007 * 119.99985 * 355.44017 * 8 6 5 34 34 H 1.07996 * 119.91553 * 0.02898 * 10 9 8 35 35 H 1.07997 * 120.08256 * 180.26461 * 11 10 9 36 36 H 0.97001 * 119.99713 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.08467 * 179.97438 * 21 12 11 38 38 H 1.07996 * 119.91660 * 179.97438 * 22 21 12 39 39 H 1.08997 * 109.47029 * 59.99911 * 24 23 3 40 40 H 1.08994 * 109.47419 * 180.02562 * 24 23 3 41 41 H 1.09000 * 109.47047 * 300.00492 * 24 23 3 42 42 H 1.08994 * 109.47131 * 59.99805 * 25 23 3 43 43 H 1.09001 * 109.47119 * 179.97438 * 25 23 3 44 44 H 1.08997 * 109.47230 * 299.99787 * 25 23 3 45 45 H 0.96703 * 113.99470 * 299.99591 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 0.4350 2.6643 -1.3671 7 8 -0.3417 2.6318 -0.4322 8 7 0.0764 3.2620 -2.5206 9 6 -1.2135 3.7636 -2.6732 10 6 -1.8390 3.7025 -3.9184 11 6 -3.1042 4.1873 -4.0743 12 6 -3.7751 4.7607 -2.9763 13 6 -5.0824 5.2700 -3.1312 14 1 -5.3909 6.1434 -2.5758 15 6 -5.9783 4.6435 -4.0040 16 7 -5.5789 3.6390 -4.7418 17 14 -7.7447 5.2409 -4.1166 18 1 -7.9418 6.3812 -3.1860 19 1 -8.0310 5.6800 -5.5060 20 1 -8.6653 4.1360 -3.7469 21 6 -3.1347 4.8236 -1.7232 22 6 -1.8712 4.3302 -1.5815 23 6 3.5647 1.4444 0.1258 24 6 4.0748 2.8869 0.1252 25 6 3.9694 0.7604 1.4332 26 8 4.1346 0.7377 -0.9779 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 2.2719 2.1231 -1.9978 33 1 0.7170 3.3426 -3.2447 34 1 -1.3219 3.2663 -4.7601 35 1 -3.5888 4.1355 -5.0380 36 1 -6.2003 3.2044 -5.3467 37 1 -3.6427 5.2621 -0.8770 38 1 -1.3788 4.3781 -0.6215 39 1 3.6401 3.4263 0.9667 40 1 5.1611 2.8883 0.2143 41 1 3.7864 3.3738 -0.8064 42 1 3.6061 -0.2672 1.4332 43 1 5.0558 0.7614 1.5226 44 1 3.5348 1.2995 2.2749 45 1 3.8545 -0.1858 -1.0403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296414607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:44 Heat of formation + Delta-G solvation = -66.121106 kcal Electronic energy + Delta-G solvation = -25509.590504 eV Core-core repulsion = 21912.603787 eV Total energy + Delta-G solvation = -3596.986717 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.41060 -38.87371 -37.26002 -34.92276 -34.14946 -33.05059 -32.19904 -31.93348 -29.50773 -28.73156 -27.60304 -26.30641 -24.60974 -22.12648 -21.51959 -20.84192 -20.29376 -19.94933 -18.03163 -17.35824 -17.21083 -16.21138 -15.70724 -15.29095 -15.13035 -14.95854 -14.62263 -13.95880 -13.76442 -13.49402 -13.00934 -12.87123 -12.68473 -12.63298 -12.51752 -12.35981 -12.13884 -12.05865 -11.78453 -11.64570 -11.40877 -11.29155 -11.11985 -10.97805 -10.80814 -10.72472 -10.65447 -10.19557 -9.99044 -9.46909 -9.39351 -9.19247 -8.80517 -8.74511 -7.48129 -6.76996 -6.56099 -4.28172 2.71299 3.03713 3.12467 3.13298 3.18336 3.21559 3.75774 3.95640 4.02499 4.35373 4.53354 4.64384 4.74979 4.77348 5.04231 5.13014 5.30378 5.36957 5.47663 5.54560 5.63105 5.66091 5.70793 5.83768 5.88505 6.03101 6.06605 6.24031 6.25563 6.49688 6.64849 6.69892 6.83814 6.90910 7.11057 7.22213 7.33132 7.34515 7.48418 7.71165 7.93052 8.04058 8.15978 8.36959 8.55188 8.70007 8.99074 8.99709 9.17543 10.35161 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.002816 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.202655 B = 9939.753684 C =10070.107618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C 0.142 3.858 4 H 0.094 0.906 5 N -0.741 5.741 6 C 0.695 3.305 7 O -0.574 6.574 8 N -0.669 5.669 9 C 0.027 3.973 10 C -0.125 4.125 11 C -0.140 4.140 12 C 0.097 3.903 13 C -0.462 4.462 14 H 0.075 0.925 15 C 0.069 3.931 16 N -0.814 5.814 17 Si 0.914 3.086 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.275 1.275 21 C -0.204 4.204 22 C -0.087 4.087 23 C 0.120 3.880 24 C -0.137 4.137 25 C -0.178 4.178 26 O -0.559 6.559 27 H 0.065 0.935 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.395 0.605 33 H 0.391 0.609 34 H 0.089 0.911 35 H 0.131 0.869 36 H 0.276 0.724 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.138 -6.343 6.135 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.179 4.179 3 C 0.035 3.965 4 H 0.112 0.888 5 N -0.398 5.398 6 C 0.396 3.604 7 O -0.451 6.451 8 N -0.315 5.315 9 C -0.066 4.066 10 C -0.145 4.145 11 C -0.160 4.160 12 C 0.094 3.906 13 C -0.493 4.493 14 H 0.093 0.907 15 C -0.145 4.145 16 N -0.442 5.442 17 Si 0.739 3.261 18 H -0.186 1.186 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.224 4.224 22 C -0.107 4.107 23 C 0.079 3.921 24 C -0.195 4.195 25 C -0.236 4.236 26 O -0.365 6.365 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.229 0.771 33 H 0.223 0.777 34 H 0.107 0.893 35 H 0.149 0.851 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 16.602 -5.960 6.733 18.880 hybrid contribution -0.545 -0.524 -0.700 1.030 sum 16.057 -6.484 6.033 18.337 Atomic orbital electron populations 1.21754 0.93923 1.00267 1.04013 1.22075 0.98258 0.96115 1.01425 1.21438 0.93501 0.93529 0.88003 0.88774 1.45045 1.16334 1.61622 1.16799 1.15992 0.81894 0.78517 0.83995 1.90909 1.51178 1.64411 1.38577 1.42142 1.13430 1.60262 1.15655 1.17071 0.85134 1.08542 0.95843 1.20297 0.96199 1.03389 0.94643 1.21168 0.92008 1.02659 1.00166 1.17711 0.92433 0.90346 0.90071 1.19506 0.96235 1.12176 1.21385 0.90685 1.25857 1.01068 0.94039 0.93567 1.69778 1.36316 1.18410 1.19684 0.86172 0.81754 0.79497 0.78676 1.18642 1.20068 1.20064 1.20805 0.96187 1.08564 0.96831 1.20417 0.95561 0.97649 0.97061 1.21517 0.90743 0.93354 0.86464 1.21723 1.01435 0.93177 1.03131 1.22516 1.02445 1.01296 0.97361 1.86537 1.72459 1.27977 1.49574 0.91639 0.94041 0.92104 0.92161 0.91256 0.77069 0.77651 0.89251 0.85108 0.91328 0.88740 0.87328 0.91021 0.91901 0.91604 0.91651 0.91476 0.91180 0.77612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 8.51 37.16 0.32 -1.70 16 2 C -0.14 -1.44 4.95 -26.73 -0.13 -1.57 16 3 C 0.14 1.54 1.62 -67.93 -0.11 1.43 16 4 H 0.09 1.22 7.58 -51.93 -0.39 0.82 16 5 N -0.74 -9.24 4.31 -58.67 -0.25 -9.49 16 6 C 0.69 11.97 6.96 -86.91 -0.61 11.36 16 7 O -0.57 -11.96 10.89 5.30 0.06 -11.90 16 8 N -0.67 -11.82 5.31 -14.10 -0.07 -11.89 16 9 C 0.03 0.60 6.31 -83.57 -0.53 0.07 16 10 C -0.12 -2.88 9.90 -39.79 -0.39 -3.27 16 11 C -0.14 -3.64 8.62 -39.26 -0.34 -3.98 16 12 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 13 C -0.46 -12.51 9.02 -37.86 -0.34 -12.85 16 14 H 0.07 1.96 7.85 -52.49 -0.41 1.55 16 15 C 0.07 1.78 5.42 -17.34 -0.09 1.68 16 16 N -0.81 -21.50 10.60 55.54 0.59 -20.91 16 17 Si 0.91 19.32 29.56 -169.99 -5.03 14.29 16 18 H -0.26 -5.49 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 C -0.20 -5.23 9.74 -39.26 -0.38 -5.61 16 22 C -0.09 -2.09 8.61 -39.79 -0.34 -2.44 16 23 C 0.12 1.02 0.85 -90.62 -0.08 0.94 16 24 C -0.14 -1.21 8.69 37.16 0.32 -0.89 16 25 C -0.18 -1.22 8.47 37.16 0.31 -0.90 16 26 O -0.56 -4.75 12.45 -35.23 -0.44 -5.19 16 27 H 0.06 1.15 5.64 -51.93 -0.29 0.86 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.94 7.84 -51.93 -0.41 0.54 16 30 H 0.06 0.55 7.03 -51.93 -0.37 0.19 16 31 H 0.07 0.58 6.17 -51.93 -0.32 0.26 16 32 H 0.40 4.22 8.00 -40.82 -0.33 3.89 16 33 H 0.39 5.54 8.83 -40.82 -0.36 5.17 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.13 3.52 6.13 -52.49 -0.32 3.20 16 36 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 37 H 0.09 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.11 2.60 6.22 -52.49 -0.33 2.28 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 42 H 0.06 0.39 6.32 -51.93 -0.33 0.06 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.38 2.26 7.45 45.56 0.34 2.60 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -30.69 355.31 -8.77 -39.46 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -6.00 Total: 15.96 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.98 Total: -15.68 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.26 Total: -42.29 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.38 Total: -17.09 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.69 -8.77 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296414607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.663 kcal (2) G-P(sol) polarization free energy of solvation -30.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds