Wall clock time and date at job start Tue Mar 31 2020 09:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46910 * 2 1 4 4 H 1.08997 * 109.47352 * 54.99919 * 3 2 1 5 5 N 1.46498 * 109.46802 * 294.99409 * 3 2 1 6 6 C 1.34784 * 119.99538 * 85.00282 * 5 3 2 7 7 O 1.21580 * 120.00379 * 359.97438 * 6 5 3 8 8 N 1.34779 * 119.99802 * 180.27214 * 6 5 3 9 9 C 1.39239 * 120.00118 * 175.43391 * 8 6 5 10 10 C 1.39484 * 119.83579 * 215.01789 * 9 8 6 11 11 C 1.36376 * 120.16664 * 179.76016 * 10 9 8 12 12 C 1.40866 * 119.82922 * 0.51810 * 11 10 9 13 13 C 1.41159 * 120.16164 * 179.71916 * 12 11 10 14 14 H 1.08000 * 119.99362 * 214.80356 * 13 12 11 15 15 C 1.39891 * 119.99913 * 34.80685 * 13 12 11 16 16 N 1.30878 * 120.00190 * 355.55267 * 15 13 12 17 17 Si 1.86805 * 119.99722 * 175.55733 * 15 13 12 18 18 H 1.48504 * 109.47034 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.46911 * 119.99537 * 17 15 13 20 20 H 1.48493 * 109.47174 * 239.99886 * 17 15 13 21 21 C 1.40865 * 119.67178 * 359.73726 * 12 11 10 22 22 C 1.36377 * 119.83292 * 0.02562 * 21 12 11 23 23 C 1.53000 * 109.46992 * 174.99640 * 3 2 1 24 24 C 1.52999 * 109.47157 * 179.97438 * 23 3 2 25 25 C 1.52997 * 109.47222 * 299.99944 * 23 3 2 26 26 O 1.42911 * 109.46889 * 60.00008 * 23 3 2 27 27 H 1.08999 * 109.47415 * 60.00623 * 1 2 3 28 28 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47293 * 300.00155 * 1 2 3 30 30 H 1.09000 * 109.47293 * 239.99845 * 2 1 3 31 31 H 1.09003 * 109.46980 * 119.99162 * 2 1 3 32 32 H 0.96998 * 120.00306 * 264.99956 * 5 3 2 33 33 H 0.97007 * 119.99985 * 355.44017 * 8 6 5 34 34 H 1.07996 * 119.91553 * 0.02898 * 10 9 8 35 35 H 1.07997 * 120.08256 * 180.26461 * 11 10 9 36 36 H 0.97001 * 119.99713 * 179.97438 * 16 15 13 37 37 H 1.08001 * 120.08467 * 179.97438 * 21 12 11 38 38 H 1.07996 * 119.91660 * 179.97438 * 22 21 12 39 39 H 1.08997 * 109.47029 * 59.99911 * 24 23 3 40 40 H 1.08994 * 109.47419 * 180.02562 * 24 23 3 41 41 H 1.09000 * 109.47047 * 300.00492 * 24 23 3 42 42 H 1.08994 * 109.47131 * 59.99805 * 25 23 3 43 43 H 1.09001 * 109.47119 * 179.97438 * 25 23 3 44 44 H 1.08997 * 109.47230 * 299.99787 * 25 23 3 45 45 H 0.96703 * 113.99470 * 299.99591 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 7 1.6524 2.0974 -1.2519 6 6 0.4350 2.6643 -1.3671 7 8 -0.3417 2.6318 -0.4322 8 7 0.0764 3.2620 -2.5206 9 6 -1.2135 3.7636 -2.6732 10 6 -1.8390 3.7025 -3.9184 11 6 -3.1042 4.1873 -4.0743 12 6 -3.7751 4.7607 -2.9763 13 6 -5.0824 5.2700 -3.1312 14 1 -5.3909 6.1434 -2.5758 15 6 -5.9783 4.6435 -4.0040 16 7 -5.5789 3.6390 -4.7418 17 14 -7.7447 5.2409 -4.1166 18 1 -7.9418 6.3812 -3.1860 19 1 -8.0310 5.6800 -5.5060 20 1 -8.6653 4.1360 -3.7469 21 6 -3.1347 4.8236 -1.7232 22 6 -1.8712 4.3302 -1.5815 23 6 3.5647 1.4444 0.1258 24 6 4.0748 2.8869 0.1252 25 6 3.9694 0.7604 1.4332 26 8 4.1346 0.7377 -0.9779 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8901 32 1 2.2719 2.1231 -1.9978 33 1 0.7170 3.3426 -3.2447 34 1 -1.3219 3.2663 -4.7601 35 1 -3.5888 4.1355 -5.0380 36 1 -6.2003 3.2044 -5.3467 37 1 -3.6427 5.2621 -0.8770 38 1 -1.3788 4.3781 -0.6215 39 1 3.6401 3.4263 0.9667 40 1 5.1611 2.8883 0.2143 41 1 3.7864 3.3738 -0.8064 42 1 3.6061 -0.2672 1.4332 43 1 5.0558 0.7614 1.5226 44 1 3.5348 1.2995 2.2749 45 1 3.8545 -0.1858 -1.0403 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296414607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:43 Heat of formation + Delta-G solvation = -87.195558 kcal Electronic energy + Delta-G solvation = -25510.504361 eV Core-core repulsion = 21912.603787 eV Total energy + Delta-G solvation = -3597.900574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.66335 -40.05096 -38.89348 -36.28207 -35.52962 -34.76119 -33.20772 -32.89080 -31.43369 -30.57148 -28.26404 -27.51869 -26.29407 -23.54152 -22.89998 -22.49515 -21.53671 -21.11035 -19.42450 -19.09256 -18.51920 -17.48805 -16.97456 -16.85609 -16.41815 -15.87048 -15.70039 -15.54061 -15.11358 -14.87430 -14.54841 -14.40383 -13.96731 -13.64642 -13.55016 -13.53527 -13.30431 -13.21049 -13.08010 -12.92067 -12.81001 -12.71370 -12.57236 -12.46098 -12.31137 -11.79733 -11.69471 -11.55007 -11.36293 -11.19049 -10.98691 -10.88774 -10.56336 -9.90334 -9.43287 -8.65079 -8.47679 -6.29935 0.87660 1.17294 1.39758 1.47506 1.55076 1.80569 2.24765 2.30538 2.83889 3.26629 3.46154 3.56808 3.71267 3.81752 4.05803 4.17038 4.29016 4.41433 4.48423 4.57282 4.69349 4.74052 4.81619 4.88320 4.95136 4.97032 5.00929 5.07779 5.16532 5.17693 5.20403 5.26948 5.35655 5.36343 5.45584 5.50951 5.64906 5.72347 5.86047 6.07284 6.15609 6.30299 6.43182 6.71372 6.82500 6.99671 7.04327 7.21596 7.74807 8.45046 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.033120 B = 0.002816 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.202655 B = 9939.753684 C =10070.107618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.133 4.133 3 C 0.139 3.861 4 H 0.072 0.928 5 N -0.719 5.719 6 C 0.694 3.306 7 O -0.611 6.611 8 N -0.664 5.664 9 C 0.047 3.953 10 C -0.123 4.123 11 C -0.157 4.157 12 C 0.064 3.936 13 C -0.498 4.498 14 H 0.071 0.929 15 C 0.027 3.973 16 N -0.843 5.843 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.263 1.263 20 H -0.270 1.270 21 C -0.218 4.218 22 C -0.097 4.097 23 C 0.132 3.868 24 C -0.141 4.141 25 C -0.176 4.176 26 O -0.565 6.565 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.408 0.592 33 H 0.411 0.589 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.283 0.717 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.030 -7.693 6.043 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.171 4.171 3 C 0.033 3.967 4 H 0.091 0.909 5 N -0.376 5.376 6 C 0.395 3.605 7 O -0.491 6.491 8 N -0.312 5.312 9 C -0.047 4.047 10 C -0.144 4.144 11 C -0.177 4.177 12 C 0.062 3.938 13 C -0.530 4.530 14 H 0.089 0.911 15 C -0.185 4.185 16 N -0.472 5.472 17 Si 0.809 3.191 18 H -0.185 1.185 19 H -0.187 1.187 20 H -0.195 1.195 21 C -0.238 4.238 22 C -0.117 4.117 23 C 0.091 3.909 24 C -0.198 4.198 25 C -0.234 4.234 26 O -0.373 6.373 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.245 0.755 33 H 0.247 0.753 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 18.582 -7.339 6.627 21.049 hybrid contribution -0.950 -0.185 -0.615 1.147 sum 17.632 -7.523 6.012 20.090 Atomic orbital electron populations 1.21677 0.96911 1.00023 1.01041 1.22052 0.95261 0.96006 1.03773 1.21628 0.95395 0.93442 0.86203 0.90939 1.44882 1.14596 1.60174 1.17937 1.16129 0.82862 0.78424 0.83090 1.90896 1.52714 1.65648 1.39803 1.41947 1.12198 1.60255 1.16779 1.17075 0.86554 1.06241 0.94857 1.20523 0.95350 1.02546 0.95958 1.21144 0.93277 1.03878 0.99403 1.18012 0.93167 0.91707 0.90902 1.19718 0.97128 1.13029 1.23077 0.91120 1.26717 1.05203 0.93863 0.92677 1.69841 1.37990 1.19209 1.20129 0.85070 0.75990 0.78934 0.79110 1.18469 1.18733 1.19485 1.20922 0.97040 1.09240 0.96642 1.20510 0.95352 0.98048 0.97779 1.21370 0.88423 0.93564 0.87565 1.21760 1.02128 0.93407 1.02553 1.22503 1.03034 1.01764 0.96082 1.86530 1.72319 1.29042 1.49459 0.95314 0.92892 0.94326 0.90196 0.88436 0.75534 0.75282 0.86052 0.86422 0.90605 0.88803 0.87346 0.91151 0.90909 0.92639 0.90341 0.90646 0.91161 0.76138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 8.51 71.98 0.61 -3.23 16 2 C -0.13 -2.38 4.95 30.59 0.15 -2.23 16 3 C 0.14 2.76 1.62 44.99 0.07 2.83 16 4 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 5 N -0.72 -16.70 4.31 -457.81 -1.97 -18.68 16 6 C 0.69 23.41 6.96 179.05 1.25 24.66 16 7 O -0.61 -25.78 10.89 -3.97 -0.04 -25.82 16 8 N -0.66 -22.65 5.31 -316.77 -1.68 -24.33 16 9 C 0.05 2.09 6.31 38.57 0.24 2.33 16 10 C -0.12 -5.65 9.90 22.14 0.22 -5.44 16 11 C -0.16 -8.37 8.62 22.48 0.19 -8.18 16 12 C 0.06 3.64 5.55 -21.28 -0.12 3.52 16 13 C -0.50 -28.05 9.02 23.39 0.21 -27.84 16 14 H 0.07 3.86 7.85 -2.91 -0.02 3.84 16 15 C 0.03 1.40 5.42 85.24 0.46 1.86 16 16 N -0.84 -45.44 10.60 21.82 0.23 -45.21 16 17 Si 0.99 40.08 29.56 68.60 2.03 42.10 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 21 C -0.22 -11.66 9.74 22.48 0.22 -11.45 16 22 C -0.10 -4.77 8.61 22.14 0.19 -4.58 16 23 C 0.13 1.87 0.85 -10.79 -0.01 1.86 16 24 C -0.14 -2.19 8.69 71.98 0.63 -1.57 16 25 C -0.18 -1.83 8.47 71.98 0.61 -1.22 16 26 O -0.56 -7.58 12.45 -148.98 -1.85 -9.43 16 27 H 0.03 0.99 5.64 -2.39 -0.01 0.98 16 28 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.04 1.21 7.84 -2.39 -0.02 1.19 16 30 H 0.08 1.16 7.03 -2.39 -0.02 1.15 16 31 H 0.10 1.26 6.17 -2.39 -0.01 1.25 16 32 H 0.41 7.64 8.00 -92.71 -0.74 6.90 16 33 H 0.41 10.70 8.83 -92.70 -0.82 9.89 16 34 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 35 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 36 H 0.28 13.84 8.30 -92.71 -0.77 13.07 16 37 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 38 H 0.11 5.33 6.22 -2.91 -0.02 5.31 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.05 0.96 7.44 -2.39 -0.02 0.95 16 42 H 0.08 0.62 6.32 -2.39 -0.02 0.60 16 43 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.39 3.03 7.45 -74.06 -0.55 2.48 16 Total: -1.00 -69.38 355.31 0.56 -68.82 By element: Atomic # 1 Polarization: 42.29 SS G_CDS: -1.08 Total: 41.21 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.93 Total: -28.66 kcal Atomic # 7 Polarization: -84.80 SS G_CDS: -3.42 Total: -88.22 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -1.90 Total: -35.26 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.10 kcal Total: -69.38 0.56 -68.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296414607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.377 kcal (2) G-P(sol) polarization free energy of solvation -69.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds