Wall clock time and date at job start Tue Mar 31 2020 09:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 N 1.46901 * 109.46939 * 240.00146 * 2 1 3 5 5 C 1.46897 * 111.00227 * 60.00013 * 4 2 1 6 6 C 1.53005 * 109.47210 * 180.02562 * 5 4 2 7 7 O 1.42899 * 109.47172 * 64.99584 * 6 5 4 8 8 C 1.42900 * 113.99833 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46945 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00151 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00019 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00399 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00040 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47347 * 89.99952 * 13 11 9 15 15 H 1.48504 * 109.47390 * 210.00152 * 13 11 9 16 16 H 1.48501 * 109.47252 * 329.99872 * 13 11 9 17 17 C 1.50701 * 109.47118 * 120.00168 * 2 1 3 18 18 O 1.21287 * 119.99646 * 265.00036 * 17 2 1 19 19 N 1.34773 * 119.99846 * 84.99740 * 17 2 1 20 20 C 1.39933 * 119.99690 * 185.26783 * 19 17 2 21 21 C 1.38867 * 120.07054 * 33.33716 * 20 19 17 22 22 C 1.38114 * 119.92565 * 179.97438 * 21 20 19 23 23 C 1.38275 * 120.07133 * 359.97386 * 22 21 20 24 24 C 1.38279 * 120.14194 * 0.04536 * 23 22 21 25 25 C 1.38106 * 120.07192 * 359.95915 * 24 23 22 26 26 H 1.08999 * 109.47009 * 300.00156 * 1 2 3 27 27 H 1.09004 * 109.47120 * 59.99965 * 1 2 3 28 28 H 1.09000 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46946 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46648 * 299.99901 * 3 2 1 31 31 H 1.08994 * 109.46792 * 60.00160 * 3 2 1 32 32 H 1.00902 * 111.00071 * 296.04512 * 4 2 1 33 33 H 1.08994 * 109.47376 * 300.00145 * 5 4 2 34 34 H 1.09003 * 109.46892 * 60.00382 * 5 4 2 35 35 H 1.08998 * 109.47107 * 185.00293 * 6 5 4 36 36 H 1.09006 * 109.46609 * 304.99999 * 6 5 4 37 37 H 1.08997 * 109.47386 * 300.00522 * 8 7 6 38 38 H 1.09002 * 109.46581 * 60.00797 * 8 7 6 39 39 H 0.96992 * 120.00045 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00113 * 5.26686 * 19 17 2 41 41 H 1.08004 * 120.03478 * 359.70173 * 21 20 19 42 42 H 1.08003 * 119.96085 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.93043 * 180.02562 * 23 22 21 44 44 H 1.08006 * 119.96582 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.03559 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 1.5486 -0.0264 -2.4211 6 6 2.0771 -0.7750 -3.6464 7 8 1.5077 -2.0850 -3.6864 8 6 1.9378 -2.8719 -4.7990 9 6 1.2784 -4.2257 -4.7415 10 1 0.5985 -4.4614 -3.9363 11 6 1.5431 -5.1634 -5.7170 12 7 0.9680 -6.3451 -5.6667 13 14 2.7186 -4.7555 -7.1103 14 1 4.1000 -5.1357 -6.7198 15 1 2.3235 -5.5083 -8.3279 16 1 2.6669 -3.2982 -7.3909 17 6 2.0323 -0.7104 1.2305 18 8 2.3207 -0.0748 2.2224 19 7 2.1610 -2.0520 1.2286 20 6 2.5212 -2.7219 2.4032 21 6 2.1012 -2.2398 3.6359 22 6 2.4581 -2.9037 4.7933 23 6 3.2322 -4.0474 4.7254 24 6 3.6524 -4.5297 3.4994 25 6 3.2990 -3.8705 2.3384 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.7502 -1.6648 -1.1910 33 1 0.4588 -0.0265 -2.4379 34 1 1.9122 1.0011 -2.4379 35 1 1.8026 -0.2316 -4.5505 36 1 3.1627 -0.8524 -3.5844 37 1 1.6601 -2.3719 -5.7268 38 1 3.0205 -2.9929 -4.7614 39 1 1.1540 -7.0046 -6.3532 40 1 2.0038 -2.5532 0.4131 41 1 1.4999 -1.3443 3.6898 42 1 2.1321 -2.5290 5.7523 43 1 3.5096 -4.5649 5.6318 44 1 4.2573 -5.4231 3.4498 45 1 3.6278 -4.2476 1.3812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815073607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:22 Heat of formation + Delta-G solvation = -50.909582 kcal Electronic energy + Delta-G solvation = -25029.697906 eV Core-core repulsion = 21433.370810 eV Total energy + Delta-G solvation = -3596.327096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.93193 -38.94721 -37.63902 -36.39487 -34.90371 -32.82172 -31.67711 -30.98270 -29.69510 -28.49980 -27.53277 -27.09308 -24.37629 -22.91763 -22.09593 -21.90075 -21.19107 -19.42246 -18.12540 -17.47634 -16.90813 -16.36055 -15.90499 -15.74982 -15.42690 -14.96177 -14.64643 -14.45875 -14.32220 -14.19000 -14.01303 -13.48829 -13.26962 -13.07361 -12.88264 -12.68847 -12.54434 -12.30206 -12.02660 -11.81891 -11.66460 -11.53555 -11.38304 -11.33001 -11.04809 -10.81341 -10.63763 -10.46450 -9.93201 -9.83801 -9.27096 -9.00287 -8.94191 -8.56784 -8.55516 -8.21504 -6.18508 -4.18222 1.17454 1.33093 2.44471 2.89436 3.20220 3.27760 3.28424 3.73230 3.94567 4.29598 4.42719 4.53940 4.73323 4.76124 4.88008 4.88336 5.07691 5.13322 5.22062 5.32900 5.37467 5.38402 5.47111 5.48697 5.51157 5.64633 5.67446 5.81181 5.85756 5.93609 5.95068 6.09992 6.11307 6.23509 6.24637 6.42216 6.45625 6.53643 6.78831 6.92655 6.94567 7.15033 7.32797 7.52157 7.91021 7.96040 8.57210 8.90873 9.40623 10.94293 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.003496 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.777318 B = 8007.407103 C = 9778.219158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.095 3.905 3 C -0.127 4.127 4 N -0.674 5.674 5 C 0.061 3.939 6 C 0.056 3.944 7 O -0.386 6.386 8 C 0.171 3.829 9 C -0.521 4.521 10 H 0.081 0.919 11 C 0.073 3.927 12 N -0.894 5.894 13 Si 0.876 3.124 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.537 3.463 18 O -0.522 6.522 19 N -0.668 5.668 20 C 0.151 3.849 21 C -0.124 4.124 22 C -0.104 4.104 23 C -0.140 4.140 24 C -0.100 4.100 25 C -0.143 4.143 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.352 0.648 33 H 0.046 0.954 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.002 0.998 38 H 0.000 1.000 39 H 0.267 0.733 40 H 0.415 0.585 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 11.228 15.807 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.001 3.999 3 C -0.185 4.185 4 N -0.309 5.309 5 C -0.068 4.068 6 C -0.022 4.022 7 O -0.305 6.305 8 C 0.096 3.904 9 C -0.559 4.559 10 H 0.100 0.900 11 C -0.129 4.129 12 N -0.532 5.532 13 Si 0.702 3.298 14 H -0.199 1.199 15 H -0.208 1.208 16 H -0.191 1.191 17 C 0.324 3.676 18 O -0.396 6.396 19 N -0.314 5.314 20 C 0.057 3.943 21 C -0.145 4.145 22 C -0.123 4.123 23 C -0.159 4.159 24 C -0.119 4.119 25 C -0.163 4.163 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.173 0.827 33 H 0.065 0.935 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.017 0.983 39 H 0.077 0.923 40 H 0.253 0.747 41 H 0.150 0.850 42 H 0.141 0.859 43 H 0.139 0.861 44 H 0.144 0.856 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 3.095 11.798 16.501 20.519 hybrid contribution -0.179 -0.464 -1.550 1.627 sum 2.916 11.334 14.951 18.987 Atomic orbital electron populations 1.22510 0.94278 1.03405 1.03717 1.21150 0.94210 0.96060 0.88519 1.21716 1.02336 0.92060 1.02391 1.60788 1.62738 1.06981 1.00371 1.22107 0.98613 0.97775 0.88290 1.22397 0.97638 0.86305 0.95814 1.87822 1.69380 1.23580 1.49707 1.20581 0.94188 0.91339 0.84266 1.20858 1.27983 0.95012 1.12023 0.90046 1.24762 0.95886 0.94682 0.97570 1.69868 1.43233 1.05195 1.34944 0.86853 0.81682 0.79011 0.82209 1.19881 1.20787 1.19122 1.20584 0.76096 0.81438 0.89485 1.90692 1.48009 1.65852 1.35075 1.43684 1.68144 1.07536 1.12044 1.17807 0.96518 0.93584 0.86433 1.21132 1.01180 1.01060 0.91081 1.21012 0.98075 0.95282 0.97882 1.21118 0.99884 0.97142 0.97757 1.20967 0.99433 0.99566 0.91927 1.21031 0.98985 0.96636 0.99697 0.91360 0.90387 0.91674 0.91398 0.91524 0.91176 0.82707 0.93549 0.89669 0.93679 0.93264 0.98000 0.98258 0.92306 0.74661 0.85005 0.85925 0.86128 0.85633 0.85228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 8.21 37.16 0.31 -1.54 16 2 C 0.10 1.09 0.92 -132.75 -0.12 0.97 16 3 C -0.13 -1.34 7.77 37.16 0.29 -1.06 16 4 N -0.67 -8.50 5.99 -101.14 -0.61 -9.10 16 5 C 0.06 0.76 5.32 -3.82 -0.02 0.74 16 6 C 0.06 0.89 6.28 37.16 0.23 1.12 16 7 O -0.39 -8.09 9.85 -35.23 -0.35 -8.44 16 8 C 0.17 4.12 4.76 36.00 0.17 4.29 16 9 C -0.52 -14.80 9.99 -34.44 -0.34 -15.15 16 10 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 11 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 12 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 13 Si 0.88 20.83 27.47 -169.99 -4.67 16.17 16 14 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 17 C 0.54 7.13 6.45 -10.99 -0.07 7.06 16 18 O -0.52 -8.14 13.78 5.55 0.08 -8.06 16 19 N -0.67 -8.38 5.27 -9.86 -0.05 -8.43 16 20 C 0.15 1.96 6.28 -83.69 -0.53 1.43 16 21 C -0.12 -1.59 8.66 -39.39 -0.34 -1.93 16 22 C -0.10 -1.12 10.04 -39.61 -0.40 -1.52 16 23 C -0.14 -1.40 10.04 -39.55 -0.40 -1.80 16 24 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 25 C -0.14 -1.70 9.96 -39.40 -0.39 -2.09 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 0.75 6.40 -51.93 -0.33 0.41 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.60 6.40 -51.93 -0.33 0.26 16 31 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 32 H 0.35 4.77 6.56 -39.29 -0.26 4.52 16 33 H 0.05 0.58 6.30 -51.93 -0.33 0.25 16 34 H 0.09 0.89 6.30 -51.93 -0.33 0.56 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.00 0.05 7.20 -51.93 -0.37 -0.32 16 38 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 39 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.42 4.81 7.02 -40.82 -0.29 4.52 16 41 H 0.13 1.77 6.41 -52.48 -0.34 1.43 16 42 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -32.10 364.61 -8.21 -40.31 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.77 Total: 7.06 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -2.11 Total: -8.93 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.12 Total: -43.60 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.27 Total: -16.50 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.67 Total: 16.17 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.10 -8.21 -40.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815073607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.603 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds