Wall clock time and date at job start Tue Mar 31 2020 09:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 N 1.46901 * 109.46939 * 240.00146 * 2 1 3 5 5 C 1.46897 * 111.00227 * 60.00013 * 4 2 1 6 6 C 1.53005 * 109.47210 * 180.02562 * 5 4 2 7 7 O 1.42899 * 109.47172 * 64.99584 * 6 5 4 8 8 C 1.42900 * 113.99833 * 179.97438 * 7 6 5 9 9 C 1.50699 * 109.46945 * 180.02562 * 8 7 6 10 10 H 1.07993 * 120.00151 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00019 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00399 * 179.97438 * 11 9 8 13 13 Si 1.86797 * 120.00040 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47347 * 89.99952 * 13 11 9 15 15 H 1.48504 * 109.47390 * 210.00152 * 13 11 9 16 16 H 1.48501 * 109.47252 * 329.99872 * 13 11 9 17 17 C 1.50701 * 109.47118 * 120.00168 * 2 1 3 18 18 O 1.21287 * 119.99646 * 265.00036 * 17 2 1 19 19 N 1.34773 * 119.99846 * 84.99740 * 17 2 1 20 20 C 1.39933 * 119.99690 * 185.26783 * 19 17 2 21 21 C 1.38867 * 120.07054 * 33.33716 * 20 19 17 22 22 C 1.38114 * 119.92565 * 179.97438 * 21 20 19 23 23 C 1.38275 * 120.07133 * 359.97386 * 22 21 20 24 24 C 1.38279 * 120.14194 * 0.04536 * 23 22 21 25 25 C 1.38106 * 120.07192 * 359.95915 * 24 23 22 26 26 H 1.08999 * 109.47009 * 300.00156 * 1 2 3 27 27 H 1.09004 * 109.47120 * 59.99965 * 1 2 3 28 28 H 1.09000 * 109.47352 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46946 * 180.02562 * 3 2 1 30 30 H 1.08999 * 109.46648 * 299.99901 * 3 2 1 31 31 H 1.08994 * 109.46792 * 60.00160 * 3 2 1 32 32 H 1.00902 * 111.00071 * 296.04512 * 4 2 1 33 33 H 1.08994 * 109.47376 * 300.00145 * 5 4 2 34 34 H 1.09003 * 109.46892 * 60.00382 * 5 4 2 35 35 H 1.08998 * 109.47107 * 185.00293 * 6 5 4 36 36 H 1.09006 * 109.46609 * 304.99999 * 6 5 4 37 37 H 1.08997 * 109.47386 * 300.00522 * 8 7 6 38 38 H 1.09002 * 109.46581 * 60.00797 * 8 7 6 39 39 H 0.96992 * 120.00045 * 179.97438 * 12 11 9 40 40 H 0.96999 * 120.00113 * 5.26686 * 19 17 2 41 41 H 1.08004 * 120.03478 * 359.70173 * 21 20 19 42 42 H 1.08003 * 119.96085 * 179.97438 * 22 21 20 43 43 H 1.08002 * 119.93043 * 180.02562 * 23 22 21 44 44 H 1.08006 * 119.96582 * 179.97438 * 24 23 22 45 45 H 1.08005 * 120.03559 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 1.5486 -0.0264 -2.4211 6 6 2.0771 -0.7750 -3.6464 7 8 1.5077 -2.0850 -3.6864 8 6 1.9378 -2.8719 -4.7990 9 6 1.2784 -4.2257 -4.7415 10 1 0.5985 -4.4614 -3.9363 11 6 1.5431 -5.1634 -5.7170 12 7 0.9680 -6.3451 -5.6667 13 14 2.7186 -4.7555 -7.1103 14 1 4.1000 -5.1357 -6.7198 15 1 2.3235 -5.5083 -8.3279 16 1 2.6669 -3.2982 -7.3909 17 6 2.0323 -0.7104 1.2305 18 8 2.3207 -0.0748 2.2224 19 7 2.1610 -2.0520 1.2286 20 6 2.5212 -2.7219 2.4032 21 6 2.1012 -2.2398 3.6359 22 6 2.4581 -2.9037 4.7933 23 6 3.2322 -4.0474 4.7254 24 6 3.6524 -4.5297 3.4994 25 6 3.2990 -3.8705 2.3384 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.7502 -1.6648 -1.1910 33 1 0.4588 -0.0265 -2.4379 34 1 1.9122 1.0011 -2.4379 35 1 1.8026 -0.2316 -4.5505 36 1 3.1627 -0.8524 -3.5844 37 1 1.6601 -2.3719 -5.7268 38 1 3.0205 -2.9929 -4.7614 39 1 1.1540 -7.0046 -6.3532 40 1 2.0038 -2.5532 0.4131 41 1 1.4999 -1.3443 3.6898 42 1 2.1321 -2.5290 5.7523 43 1 3.5096 -4.5649 5.6318 44 1 4.2573 -5.4231 3.4498 45 1 3.6278 -4.2476 1.3812 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815073607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:21 Heat of formation + Delta-G solvation = -73.163830 kcal Electronic energy + Delta-G solvation = -25030.662923 eV Core-core repulsion = 21433.370810 eV Total energy + Delta-G solvation = -3597.292112 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.92324 -39.86785 -38.93362 -37.68734 -35.88273 -34.88123 -32.87725 -31.85592 -30.59132 -30.21618 -28.51853 -28.30163 -25.39434 -23.98424 -23.79955 -23.02888 -22.22316 -20.39829 -19.19397 -18.91404 -18.42725 -17.44191 -17.23580 -16.88287 -16.57405 -16.41108 -15.97644 -15.60646 -15.49511 -15.23698 -14.95173 -14.77565 -14.39324 -14.27981 -14.02314 -13.94709 -13.67402 -13.46675 -13.17298 -13.01531 -12.85217 -12.63383 -12.50144 -12.45826 -12.24238 -12.19182 -11.99536 -11.82116 -11.43092 -11.33242 -10.92675 -10.85170 -10.32292 -9.89176 -9.55100 -9.15045 -8.35843 -6.43026 0.26730 0.44294 1.35182 1.36890 1.44029 1.47450 1.94144 2.30130 2.82337 2.96305 2.97583 3.11125 3.48284 3.83366 3.85226 4.01901 4.05008 4.19989 4.28818 4.36593 4.47924 4.51384 4.55452 4.57552 4.59483 4.60115 4.67084 4.73693 4.86590 4.88164 4.90399 5.03169 5.08704 5.13647 5.23312 5.33612 5.36937 5.46270 5.54041 5.59524 5.81263 5.95708 6.06939 6.11065 6.31983 6.61013 6.75683 6.95016 7.21569 8.80783 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.003496 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.777318 B = 8007.407103 C = 9778.219158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.100 3.900 3 C -0.124 4.124 4 N -0.680 5.680 5 C 0.066 3.934 6 C 0.049 3.951 7 O -0.403 6.403 8 C 0.182 3.818 9 C -0.541 4.541 10 H 0.034 0.966 11 C 0.014 3.986 12 N -0.942 5.942 13 Si 0.951 3.049 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.245 1.245 17 C 0.533 3.467 18 O -0.550 6.550 19 N -0.666 5.666 20 C 0.126 3.874 21 C -0.143 4.143 22 C -0.107 4.107 23 C -0.137 4.137 24 C -0.103 4.103 25 C -0.157 4.157 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.344 0.656 33 H 0.049 0.951 34 H 0.114 0.886 35 H 0.061 0.939 36 H 0.052 0.948 37 H 0.010 0.990 38 H 0.009 0.991 39 H 0.272 0.728 40 H 0.417 0.583 41 H 0.119 0.881 42 H 0.145 0.855 43 H 0.151 0.849 44 H 0.150 0.850 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.753 12.480 15.378 20.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 C -0.182 4.182 4 N -0.314 5.314 5 C -0.062 4.062 6 C -0.028 4.028 7 O -0.323 6.323 8 C 0.106 3.894 9 C -0.579 4.579 10 H 0.053 0.947 11 C -0.184 4.184 12 N -0.581 5.581 13 Si 0.773 3.227 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.168 1.168 17 C 0.321 3.679 18 O -0.426 6.426 19 N -0.311 5.311 20 C 0.032 3.968 21 C -0.163 4.163 22 C -0.126 4.126 23 C -0.156 4.156 24 C -0.121 4.121 25 C -0.178 4.178 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.163 0.837 33 H 0.068 0.932 34 H 0.132 0.868 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.081 0.919 40 H 0.255 0.745 41 H 0.137 0.863 42 H 0.163 0.837 43 H 0.169 0.831 44 H 0.167 0.833 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.383 13.066 16.085 21.182 hybrid contribution -0.628 -0.891 -1.271 1.674 sum 3.756 12.175 14.814 19.540 Atomic orbital electron populations 1.22482 0.93258 1.03163 1.04593 1.21160 0.94872 0.96193 0.87158 1.21712 1.01628 0.91361 1.03453 1.60805 1.63038 1.06644 1.00900 1.22145 0.98805 0.98470 0.86760 1.22718 0.97851 0.84120 0.98132 1.87790 1.70023 1.25920 1.48564 1.20269 0.93949 0.89641 0.85554 1.21153 1.27817 0.97836 1.11048 0.94722 1.25779 0.97776 0.94197 1.00643 1.70024 1.45115 1.06606 1.36386 0.85670 0.79048 0.79984 0.78022 1.18651 1.20193 1.16848 1.20960 0.75652 0.81545 0.89773 1.90670 1.49422 1.66362 1.36164 1.43695 1.67738 1.07492 1.12152 1.18070 0.97631 0.94422 0.86657 1.21185 1.02001 1.01230 0.91933 1.21331 0.97741 0.95377 0.98114 1.21498 0.98702 0.96615 0.98755 1.21331 0.99131 1.00052 0.91618 1.21217 0.99292 0.96630 1.00628 0.90774 0.89148 0.92522 0.92473 0.89361 0.91189 0.83661 0.93248 0.86763 0.92083 0.92981 0.97188 0.97336 0.91921 0.74460 0.86334 0.83742 0.83093 0.83277 0.85007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 8.21 71.98 0.59 -2.88 16 2 C 0.10 2.24 0.92 2.78 0.00 2.24 16 3 C -0.12 -2.44 7.77 71.98 0.56 -1.88 16 4 N -0.68 -16.59 5.99 -473.89 -2.84 -19.43 16 5 C 0.07 1.52 5.32 86.31 0.46 1.98 16 6 C 0.05 1.44 6.28 71.98 0.45 1.89 16 7 O -0.40 -16.70 9.85 -148.98 -1.47 -18.16 16 8 C 0.18 8.56 4.76 71.24 0.34 8.90 16 9 C -0.54 -31.40 9.99 25.60 0.26 -31.15 16 10 H 0.03 2.26 8.06 -2.91 -0.02 2.23 16 11 C 0.01 0.81 5.47 84.65 0.46 1.27 16 12 N -0.94 -57.80 13.96 21.45 0.30 -57.50 16 13 Si 0.95 42.16 27.47 68.60 1.88 44.04 16 14 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 15 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 16 H -0.25 -9.95 6.54 99.48 0.65 -9.30 16 17 C 0.53 14.47 6.45 87.66 0.57 15.03 16 18 O -0.55 -17.61 13.78 -3.05 -0.04 -17.65 16 19 N -0.67 -17.43 5.27 -303.50 -1.60 -19.03 16 20 C 0.13 3.39 6.28 38.15 0.24 3.63 16 21 C -0.14 -3.76 8.66 22.39 0.19 -3.56 16 22 C -0.11 -2.23 10.04 22.25 0.22 -2.01 16 23 C -0.14 -2.50 10.04 22.29 0.22 -2.27 16 24 C -0.10 -2.03 10.04 22.25 0.22 -1.81 16 25 C -0.16 -3.78 9.96 22.39 0.22 -3.56 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.56 6.40 -2.38 -0.02 1.55 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.32 6.40 -2.39 -0.02 1.31 16 31 H 0.07 1.39 7.87 -2.39 -0.02 1.37 16 32 H 0.34 9.41 6.56 -89.69 -0.59 8.82 16 33 H 0.05 1.12 6.30 -2.39 -0.02 1.10 16 34 H 0.11 1.98 6.30 -2.39 -0.02 1.96 16 35 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 38 H 0.01 0.40 7.57 -2.39 -0.02 0.38 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.42 10.26 7.02 -92.71 -0.65 9.61 16 41 H 0.12 3.35 6.41 -2.91 -0.02 3.33 16 42 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 43 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 44 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 45 H 0.13 2.97 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -71.04 364.61 0.96 -70.09 By element: Atomic # 1 Polarization: 32.10 SS G_CDS: -0.29 Total: 31.81 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 5.01 Total: -14.17 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -4.14 Total: -95.96 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -1.51 Total: -35.81 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Total: -71.04 0.96 -70.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815073607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.075 kcal (2) G-P(sol) polarization free energy of solvation -71.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds