Wall clock time and date at job start Tue Mar 31 2020 09:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47314 * 2 1 4 4 H 1.08999 * 109.52322 * 305.08120 * 3 2 1 5 5 C 1.53198 * 109.49729 * 65.15889 * 3 2 1 6 6 N 1.46927 * 108.77316 * 174.58454 * 5 3 2 7 7 C 1.34773 * 120.62474 * 126.36903 * 6 5 3 8 8 O 1.21615 * 120.00446 * 354.37868 * 7 6 5 9 9 C 1.47382 * 119.99845 * 174.38043 * 7 6 5 10 10 C 1.47024 * 127.19204 * 320.97476 * 9 7 6 11 11 C 1.34174 * 105.95538 * 179.97438 * 10 9 7 12 12 O 1.34215 * 109.12512 * 359.97438 * 11 10 9 13 13 C 1.33650 * 110.90863 * 359.76160 * 12 11 10 14 14 C 1.50699 * 125.80377 * 180.26775 * 13 12 11 15 15 C 1.46926 * 118.74108 * 306.39494 * 6 5 3 16 16 C 1.53166 * 108.76896 * 53.60863 * 15 6 5 17 17 C 1.53034 * 109.49723 * 184.99768 * 3 2 1 18 18 H 1.09002 * 109.45983 * 58.67523 * 17 3 2 19 19 N 1.46501 * 109.46384 * 298.70155 * 17 3 2 20 20 C 1.36939 * 119.99914 * 154.97166 * 19 17 3 21 21 H 1.07993 * 120.00527 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99570 * 180.02562 * 20 19 17 23 23 N 1.31614 * 119.99940 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99752 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47089 * 269.99745 * 24 22 20 26 26 H 1.48498 * 109.47203 * 29.99492 * 24 22 20 27 27 H 1.48502 * 109.47426 * 149.99808 * 24 22 20 28 28 H 1.09006 * 109.46980 * 300.00419 * 1 2 3 29 29 H 1.09006 * 109.47034 * 60.00016 * 1 2 3 30 30 H 1.08998 * 109.47505 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47241 * 239.99956 * 2 1 3 32 32 H 1.09006 * 109.47034 * 119.99984 * 2 1 3 33 33 H 1.08994 * 109.58495 * 294.37347 * 5 3 2 34 34 H 1.08998 * 109.58113 * 54.66112 * 5 3 2 35 35 H 1.08008 * 127.02258 * 359.97438 * 10 9 7 36 36 H 1.08000 * 125.43793 * 180.02562 * 11 10 9 37 37 H 1.09006 * 109.47022 * 270.14220 * 14 13 12 38 38 H 1.08992 * 109.46882 * 30.14265 * 14 13 12 39 39 H 1.09003 * 109.47074 * 150.14637 * 14 13 12 40 40 H 1.09004 * 109.58699 * 173.39279 * 15 6 5 41 41 H 1.09002 * 109.58611 * 293.67566 * 15 6 5 42 42 H 1.08994 * 109.47768 * 185.40787 * 16 15 6 43 43 H 1.09001 * 109.49916 * 65.31412 * 16 15 6 44 44 H 0.96996 * 119.99866 * 334.98036 * 19 17 3 45 45 H 0.96998 * 119.99695 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2452 3.4644 1.3507 7 6 1.4857 4.5565 1.5672 8 8 0.2756 4.4531 1.6296 9 6 2.1217 5.8762 1.7282 10 6 3.3711 6.1796 2.4415 11 6 3.5518 7.5037 2.3220 12 8 2.5395 8.0233 1.6103 13 6 1.6778 7.0706 1.2410 14 6 0.4266 7.2807 0.4279 15 6 3.6953 3.5888 1.1498 16 6 4.0735 2.8882 -0.1587 17 6 3.5652 1.4450 -0.1257 18 1 3.8546 0.9370 -1.0456 19 7 4.1507 0.7475 1.0219 20 6 5.3883 0.1713 0.9143 21 1 5.9329 0.2313 -0.0163 22 6 5.9428 -0.4901 2.0016 23 7 5.2793 -0.5628 3.1359 24 14 7.6313 -1.2755 1.8552 25 1 7.4859 -2.6789 1.3917 26 1 8.4485 -0.5134 0.8771 27 1 8.3017 -1.2587 3.1801 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5533 2.2162 1.3585 34 1 1.9943 1.5364 2.1548 35 1 4.0124 5.4795 2.9565 36 1 4.3802 8.0622 2.7323 37 1 -0.4108 7.4840 1.0955 38 1 0.5683 8.1263 -0.2451 39 1 0.2171 6.3836 -0.1549 40 1 3.9671 4.6428 1.0918 41 1 4.2210 3.1212 1.9824 42 1 5.1575 2.8896 -0.2715 43 1 3.6190 3.4148 -0.9978 44 1 3.6617 0.6938 1.8579 45 1 5.6666 -1.0252 3.8956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037796830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:48 Heat of formation + Delta-G solvation = -15.036253 kcal Electronic energy + Delta-G solvation = -26429.633543 eV Core-core repulsion = 22834.862031 eV Total energy + Delta-G solvation = -3594.771511 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.59194 -39.82683 -37.69423 -34.47517 -33.76183 -32.93017 -31.96975 -31.63911 -29.40161 -28.59007 -27.03353 -25.16554 -23.83124 -23.53639 -22.51004 -21.11724 -20.74459 -19.17834 -18.29807 -17.35349 -17.21333 -16.44916 -15.98518 -15.65654 -15.02283 -14.59913 -14.32193 -14.07592 -13.96898 -13.48514 -13.40835 -13.24170 -13.09776 -13.01698 -12.88348 -12.72208 -12.49732 -12.15547 -11.87193 -11.65810 -11.38541 -11.06555 -10.97090 -10.79743 -10.72142 -10.28504 -10.25480 -10.16877 -9.83761 -9.76811 -9.54483 -9.47769 -8.91542 -8.61749 -8.15205 -6.97483 -5.79600 -3.07759 1.46910 2.09614 2.77724 3.18973 3.40692 3.45109 3.46624 3.47834 4.48552 4.56863 4.74461 4.92069 5.13229 5.18222 5.30180 5.36777 5.38113 5.51975 5.55290 5.57691 5.59180 5.63912 5.70985 5.71866 5.85258 5.86594 5.94579 6.04713 6.12575 6.17900 6.23989 6.27994 6.37668 6.41082 6.44701 6.58727 6.67041 6.73635 6.79942 6.96137 6.99576 7.05874 7.68151 7.77022 8.38975 8.44015 9.50675 10.07701 10.43011 11.42846 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.004604 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.391607 B = 6080.430112 C = 7414.097429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.592 5.592 7 C 0.586 3.414 8 O -0.553 6.553 9 C -0.229 4.229 10 C -0.181 4.181 11 C -0.044 4.044 12 O -0.179 6.179 13 C 0.056 3.944 14 C -0.073 4.073 15 C 0.110 3.890 16 C -0.149 4.149 17 C 0.178 3.822 18 H 0.050 0.950 19 N -0.718 5.718 20 C -0.236 4.236 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.283 1.283 27 H -0.293 1.293 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.207 0.793 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 13.861 -5.148 16.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.375 3.625 8 O -0.433 6.433 9 C -0.233 4.233 10 C -0.201 4.201 11 C -0.109 4.109 12 O -0.075 6.075 13 C 0.004 3.996 14 C -0.129 4.129 15 C -0.012 4.012 16 C -0.190 4.190 17 C 0.068 3.932 18 H 0.068 0.932 19 N -0.361 5.361 20 C -0.368 4.368 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.581 5.581 24 Si 0.735 3.265 25 H -0.218 1.218 26 H -0.209 1.209 27 H -0.219 1.219 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.178 0.822 36 H 0.224 0.776 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.173 14.005 -5.218 16.578 hybrid contribution 1.283 -0.714 0.466 1.541 sum -5.890 13.292 -4.752 15.295 Atomic orbital electron populations 1.21852 0.96813 1.01000 1.01363 1.21418 0.94276 0.95746 1.03352 1.21741 0.97366 0.96099 0.97026 0.91602 1.21701 0.98806 0.81448 0.98342 1.47942 1.08880 1.06223 1.69213 1.17274 0.85904 0.82875 0.76452 1.90738 1.13655 1.86143 1.52759 1.21189 0.99126 0.94228 1.08805 1.22996 0.97129 0.96044 1.03883 1.23835 0.92947 0.94058 1.00097 1.83724 1.29816 1.37546 1.56461 1.22620 0.92934 0.85349 0.98708 1.20397 0.90188 1.04087 0.98241 1.21918 0.79002 1.00693 0.99620 1.22513 1.01687 0.99186 0.95621 1.20229 0.89758 0.90663 0.92583 0.93179 1.42470 1.19082 1.63932 1.10575 1.19219 0.93624 1.26882 0.97048 0.91292 1.24688 0.98514 1.01503 0.96013 1.69647 1.38162 1.48017 1.02251 0.86252 0.84281 0.79381 0.76616 1.21841 1.20874 1.21919 0.92775 0.93388 0.93184 0.92045 0.90498 0.89543 0.90710 0.82225 0.77620 0.89261 0.90464 0.88859 0.90373 0.89966 0.90826 0.93449 0.78107 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.77 5.19 -26.73 -0.14 -1.91 16 3 C -0.10 -1.69 2.14 -90.50 -0.19 -1.88 16 4 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.12 2.06 5.04 -3.71 -0.02 2.04 16 6 N -0.59 -10.03 2.97 -174.06 -0.52 -10.54 16 7 C 0.59 10.10 7.33 -12.54 -0.09 10.01 16 8 O -0.55 -10.66 15.80 5.26 0.08 -10.57 16 9 C -0.23 -3.41 5.35 -103.27 -0.55 -3.96 16 10 C -0.18 -2.31 8.73 -37.45 -0.33 -2.64 16 11 C -0.04 -0.46 12.03 29.30 0.35 -0.11 16 12 O -0.18 -2.15 10.52 7.66 0.08 -2.07 16 13 C 0.06 0.73 7.37 -34.96 -0.26 0.47 16 14 C -0.07 -0.75 9.88 36.01 0.36 -0.39 16 15 C 0.11 1.81 5.30 -3.72 -0.02 1.79 16 16 C -0.15 -2.51 5.78 -26.62 -0.15 -2.67 16 17 C 0.18 3.32 2.53 -67.89 -0.17 3.15 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 N -0.72 -16.38 3.73 -53.38 -0.20 -16.58 16 20 C -0.24 -6.12 9.93 -15.06 -0.15 -6.27 16 21 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -26.89 13.06 55.49 0.72 -26.17 16 24 Si 0.90 21.64 29.55 -169.99 -5.02 16.62 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H 0.05 0.75 6.70 -51.93 -0.35 0.40 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.08 1.43 7.70 -51.93 -0.40 1.03 16 33 H 0.09 1.49 5.72 -51.93 -0.30 1.20 16 34 H 0.07 1.43 6.64 -51.93 -0.35 1.08 16 35 H 0.16 1.95 7.47 -52.48 -0.39 1.56 16 36 H 0.21 1.32 8.06 -52.49 -0.42 0.89 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 1.04 7.67 -51.93 -0.40 0.64 16 40 H 0.08 1.15 4.73 -51.93 -0.25 0.91 16 41 H 0.08 1.56 7.74 -51.93 -0.40 1.16 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.38 9.41 5.95 -40.82 -0.24 9.17 16 45 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 356.44 15.07 5.37 5.37 Total: -1.00 -30.42 356.44 -7.42 -37.84 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -6.84 Total: 10.60 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.10 Total: -4.50 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.01 Total: -53.29 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.16 Total: -12.64 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.42 -7.42 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037796830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.804 kcal (2) G-P(sol) polarization free energy of solvation -30.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds