Wall clock time and date at job start Tue Mar 31 2020 09:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47314 * 2 1 4 4 H 1.08999 * 109.52322 * 305.08120 * 3 2 1 5 5 C 1.53198 * 109.49729 * 65.15889 * 3 2 1 6 6 N 1.46927 * 108.77316 * 174.58454 * 5 3 2 7 7 C 1.34773 * 120.62474 * 126.36903 * 6 5 3 8 8 O 1.21615 * 120.00446 * 354.37868 * 7 6 5 9 9 C 1.47382 * 119.99845 * 174.38043 * 7 6 5 10 10 C 1.47024 * 127.19204 * 320.97476 * 9 7 6 11 11 C 1.34174 * 105.95538 * 179.97438 * 10 9 7 12 12 O 1.34215 * 109.12512 * 359.97438 * 11 10 9 13 13 C 1.33650 * 110.90863 * 359.76160 * 12 11 10 14 14 C 1.50699 * 125.80377 * 180.26775 * 13 12 11 15 15 C 1.46926 * 118.74108 * 306.39494 * 6 5 3 16 16 C 1.53166 * 108.76896 * 53.60863 * 15 6 5 17 17 C 1.53034 * 109.49723 * 184.99768 * 3 2 1 18 18 H 1.09002 * 109.45983 * 58.67523 * 17 3 2 19 19 N 1.46501 * 109.46384 * 298.70155 * 17 3 2 20 20 C 1.36939 * 119.99914 * 154.97166 * 19 17 3 21 21 H 1.07993 * 120.00527 * 0.02562 * 20 19 17 22 22 C 1.38818 * 119.99570 * 180.02562 * 20 19 17 23 23 N 1.31614 * 119.99940 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99752 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47089 * 269.99745 * 24 22 20 26 26 H 1.48498 * 109.47203 * 29.99492 * 24 22 20 27 27 H 1.48502 * 109.47426 * 149.99808 * 24 22 20 28 28 H 1.09006 * 109.46980 * 300.00419 * 1 2 3 29 29 H 1.09006 * 109.47034 * 60.00016 * 1 2 3 30 30 H 1.08998 * 109.47505 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47241 * 239.99956 * 2 1 3 32 32 H 1.09006 * 109.47034 * 119.99984 * 2 1 3 33 33 H 1.08994 * 109.58495 * 294.37347 * 5 3 2 34 34 H 1.08998 * 109.58113 * 54.66112 * 5 3 2 35 35 H 1.08008 * 127.02258 * 359.97438 * 10 9 7 36 36 H 1.08000 * 125.43793 * 180.02562 * 11 10 9 37 37 H 1.09006 * 109.47022 * 270.14220 * 14 13 12 38 38 H 1.08992 * 109.46882 * 30.14265 * 14 13 12 39 39 H 1.09003 * 109.47074 * 150.14637 * 14 13 12 40 40 H 1.09004 * 109.58699 * 173.39279 * 15 6 5 41 41 H 1.09002 * 109.58611 * 293.67566 * 15 6 5 42 42 H 1.08994 * 109.47768 * 185.40787 * 16 15 6 43 43 H 1.09001 * 109.49916 * 65.31412 * 16 15 6 44 44 H 0.96996 * 119.99866 * 334.98036 * 19 17 3 45 45 H 0.96998 * 119.99695 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9828 -0.8407 5 6 1.6385 2.1268 1.3105 6 7 2.2452 3.4644 1.3507 7 6 1.4857 4.5565 1.5672 8 8 0.2756 4.4531 1.6296 9 6 2.1217 5.8762 1.7282 10 6 3.3711 6.1796 2.4415 11 6 3.5518 7.5037 2.3220 12 8 2.5395 8.0233 1.6103 13 6 1.6778 7.0706 1.2410 14 6 0.4266 7.2807 0.4279 15 6 3.6953 3.5888 1.1498 16 6 4.0735 2.8882 -0.1587 17 6 3.5652 1.4450 -0.1257 18 1 3.8546 0.9370 -1.0456 19 7 4.1507 0.7475 1.0219 20 6 5.3883 0.1713 0.9143 21 1 5.9329 0.2313 -0.0163 22 6 5.9428 -0.4901 2.0016 23 7 5.2793 -0.5628 3.1359 24 14 7.6313 -1.2755 1.8552 25 1 7.4859 -2.6789 1.3917 26 1 8.4485 -0.5134 0.8771 27 1 8.3017 -1.2587 3.1801 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 0.5533 2.2162 1.3585 34 1 1.9943 1.5364 2.1548 35 1 4.0124 5.4795 2.9565 36 1 4.3802 8.0622 2.7323 37 1 -0.4108 7.4840 1.0955 38 1 0.5683 8.1263 -0.2451 39 1 0.2171 6.3836 -0.1549 40 1 3.9671 4.6428 1.0918 41 1 4.2210 3.1212 1.9824 42 1 5.1575 2.8896 -0.2715 43 1 3.6190 3.4148 -0.9978 44 1 3.6617 0.6938 1.8579 45 1 5.6666 -1.0252 3.8956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037796830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:09:47 Heat of formation + Delta-G solvation = -32.443335 kcal Electronic energy + Delta-G solvation = -26430.388370 eV Core-core repulsion = 22834.862031 eV Total energy + Delta-G solvation = -3595.526339 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.55174 -41.21043 -39.13495 -35.93344 -35.40162 -33.95731 -33.41210 -32.81716 -31.01884 -30.02864 -28.06216 -26.52281 -25.47588 -25.09557 -23.68328 -22.15839 -22.11258 -20.45566 -19.58022 -19.22375 -18.46610 -17.56021 -17.11430 -16.86905 -16.61783 -16.12346 -15.83785 -15.56215 -15.27477 -14.84329 -14.78758 -14.52395 -14.33563 -14.08828 -13.88453 -13.83994 -13.82080 -13.53845 -13.06887 -12.94165 -12.83893 -12.69552 -12.64096 -12.36623 -12.15242 -12.10345 -11.83344 -11.58042 -11.45136 -11.14427 -11.09052 -10.88577 -10.57290 -9.68043 -9.46292 -8.91175 -7.87603 -5.13817 0.43077 1.12913 1.50011 1.50855 1.58419 1.81859 1.96359 2.18315 2.60589 3.45997 3.51584 3.65634 3.82529 3.86613 3.98926 4.03829 4.08765 4.27783 4.32786 4.36610 4.44085 4.46664 4.58036 4.61019 4.64914 4.67580 4.76044 4.83766 4.85135 4.90246 5.00263 5.04992 5.16390 5.20088 5.22290 5.24700 5.29152 5.35968 5.41341 5.52008 5.60951 5.66538 6.05689 6.33896 6.42871 7.09522 7.41643 8.17372 8.41649 9.35720 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.004604 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.391607 B = 6080.430112 C = 7414.097429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.084 0.916 5 C 0.125 3.875 6 N -0.593 5.593 7 C 0.585 3.415 8 O -0.579 6.579 9 C -0.264 4.264 10 C -0.207 4.207 11 C -0.020 4.020 12 O -0.176 6.176 13 C 0.062 3.938 14 C -0.073 4.073 15 C 0.121 3.879 16 C -0.141 4.141 17 C 0.172 3.828 18 H 0.048 0.952 19 N -0.723 5.723 20 C -0.226 4.226 21 H 0.075 0.925 22 C -0.071 4.071 23 N -0.969 5.969 24 Si 0.963 3.037 25 H -0.293 1.293 26 H -0.270 1.270 27 H -0.302 1.302 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.158 0.842 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.100 0.900 41 H 0.052 0.948 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.373 0.627 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 15.972 -6.756 18.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.102 0.898 5 C 0.003 3.997 6 N -0.324 5.324 7 C 0.375 3.625 8 O -0.461 6.461 9 C -0.268 4.268 10 C -0.226 4.226 11 C -0.085 4.085 12 O -0.073 6.073 13 C 0.009 3.991 14 C -0.129 4.129 15 C -0.002 4.002 16 C -0.182 4.182 17 C 0.064 3.936 18 H 0.066 0.934 19 N -0.364 5.364 20 C -0.358 4.358 21 H 0.093 0.907 22 C -0.263 4.263 23 N -0.620 5.620 24 Si 0.793 3.207 25 H -0.221 1.221 26 H -0.195 1.195 27 H -0.229 1.229 28 H 0.067 0.933 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.176 0.824 36 H 0.266 0.734 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.207 0.793 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.972 16.144 -6.879 18.883 hybrid contribution 1.179 -1.290 0.933 1.981 sum -5.794 14.854 -5.945 17.016 Atomic orbital electron populations 1.21784 0.94682 1.01953 1.01881 1.21341 0.96129 0.95040 1.01807 1.21648 0.95808 0.96519 0.97071 0.89802 1.21548 0.98699 0.81663 0.97827 1.47967 1.09003 1.06110 1.69287 1.17641 0.85635 0.83664 0.75518 1.90708 1.14784 1.86689 1.53943 1.21165 1.00807 0.93615 1.11241 1.23055 0.96995 0.97344 1.05200 1.24600 0.92655 0.93455 0.97757 1.83772 1.29931 1.37194 1.56355 1.23010 0.93311 0.84852 0.97914 1.20498 0.89230 1.04744 0.98463 1.21788 0.78495 1.01643 0.98231 1.22395 1.01361 0.97861 0.96582 1.20444 0.91080 0.91293 0.90831 0.93355 1.42569 1.18327 1.64190 1.11343 1.19568 0.94316 1.25173 0.96769 0.90710 1.25361 1.01761 1.03175 0.96037 1.69805 1.39647 1.49722 1.02866 0.85292 0.80844 0.78362 0.76168 1.22105 1.19475 1.22865 0.93253 0.91778 0.92095 0.91832 0.93698 0.89479 0.93304 0.82446 0.73357 0.88611 0.87625 0.89921 0.88197 0.92973 0.91424 0.91125 0.79345 0.94416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.85 9.67 71.98 0.70 -3.15 16 2 C -0.10 -3.37 5.19 30.59 0.16 -3.21 16 3 C -0.09 -2.95 2.14 -10.71 -0.02 -2.98 16 4 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 5 C 0.13 4.41 5.04 86.36 0.43 4.84 16 6 N -0.59 -20.19 2.97 -822.87 -2.45 -22.64 16 7 C 0.58 20.07 7.33 86.65 0.63 20.70 16 8 O -0.58 -22.38 15.80 -4.08 -0.06 -22.44 16 9 C -0.26 -7.58 5.35 -18.99 -0.10 -7.68 16 10 C -0.21 -4.97 8.73 23.65 0.21 -4.76 16 11 C -0.02 -0.35 12.03 66.89 0.80 0.45 16 12 O -0.18 -3.70 10.52 4.49 0.05 -3.65 16 13 C 0.06 1.49 7.37 25.26 0.19 1.67 16 14 C -0.07 -1.35 9.88 71.24 0.70 -0.65 16 15 C 0.12 3.96 5.30 86.35 0.46 4.42 16 16 C -0.14 -4.61 5.78 30.66 0.18 -4.44 16 17 C 0.17 6.37 2.53 45.02 0.11 6.48 16 18 H 0.05 1.82 8.08 -2.39 -0.02 1.80 16 19 N -0.72 -33.65 3.73 -322.81 -1.20 -34.85 16 20 C -0.23 -11.78 9.93 84.03 0.83 -10.94 16 21 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 23 N -0.97 -57.65 13.06 21.65 0.28 -57.36 16 24 Si 0.96 45.01 29.55 68.60 2.03 47.03 16 25 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 28 H 0.05 1.34 6.70 -2.38 -0.02 1.33 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.04 1.73 7.70 -2.38 -0.02 1.71 16 33 H 0.09 3.06 5.72 -2.39 -0.01 3.04 16 34 H 0.05 1.97 6.64 -2.39 -0.02 1.96 16 35 H 0.16 3.78 7.47 -2.91 -0.02 3.75 16 36 H 0.25 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.73 7.67 -2.39 -0.02 1.71 16 40 H 0.10 2.86 4.73 -2.39 -0.01 2.85 16 41 H 0.05 2.04 7.74 -2.39 -0.02 2.02 16 42 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.37 19.08 5.95 -92.71 -0.55 18.53 16 45 H 0.25 14.48 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -66.61 356.44 4.84 -61.77 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.44 Total: 34.85 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 5.75 Total: -2.70 kcal Atomic # 7 Polarization: -111.49 SS G_CDS: -3.37 Total: -114.85 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.02 Total: -26.09 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -66.61 4.84 -61.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037796830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.323 kcal (2) G-P(sol) polarization free energy of solvation -66.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds