Wall clock time and date at job start Tue Mar 31 2020 09:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46852 * 2 1 4 4 C 1.52997 * 109.46888 * 120.00409 * 2 1 3 5 5 O 1.42898 * 109.47482 * 64.99545 * 4 2 1 6 6 C 1.35656 * 117.00079 * 179.97438 * 5 4 2 7 7 C 1.38714 * 120.14915 * 359.97438 * 6 5 4 8 8 C 1.38051 * 120.08468 * 179.97438 * 7 6 5 9 9 C 1.38555 * 120.38906 * 0.02562 * 8 7 6 10 10 C 1.37785 * 120.30047 * 0.02562 * 9 8 7 11 11 C 1.39713 * 119.90793 * 359.97438 * 10 9 8 12 12 C 1.47535 * 120.19038 * 180.02562 * 11 10 9 13 13 O 1.21581 * 119.99746 * 179.97438 * 12 11 10 14 14 N 1.34774 * 119.99732 * 359.97438 * 12 11 10 15 15 C 1.46506 * 119.99862 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47253 * 179.97438 * 15 14 12 17 17 N 1.46501 * 109.46912 * 179.97438 * 16 15 14 18 18 C 1.36934 * 119.99581 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00325 * 0.02562 * 18 17 16 20 20 C 1.38814 * 119.99789 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00023 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00122 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46998 * 60.00474 * 22 20 18 24 24 H 1.48504 * 109.47107 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47376 * 300.00224 * 22 20 18 26 26 H 1.09000 * 109.47394 * 300.00358 * 1 2 3 27 27 H 1.08998 * 109.47491 * 59.99976 * 1 2 3 28 28 H 1.09005 * 109.47597 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46704 * 239.99903 * 2 1 3 30 30 H 1.09006 * 109.46436 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47142 * 299.99713 * 3 2 1 32 32 H 1.08994 * 109.47059 * 60.00477 * 3 2 1 33 33 H 1.09003 * 109.46984 * 304.99801 * 4 2 1 34 34 H 1.09003 * 109.46873 * 185.00243 * 4 2 1 35 35 H 1.07995 * 119.95834 * 0.02706 * 7 6 5 36 36 H 1.07997 * 119.80544 * 180.27727 * 8 7 6 37 37 H 1.07998 * 119.84759 * 179.97438 * 9 8 7 38 38 H 1.07996 * 120.04295 * 180.02562 * 10 9 8 39 39 H 0.97003 * 120.00649 * 0.02562 * 14 12 11 40 40 H 1.09000 * 109.46797 * 299.99981 * 15 14 12 41 41 H 1.09005 * 109.46904 * 59.99644 * 15 14 12 42 42 H 1.08992 * 109.47425 * 300.00048 * 16 15 14 43 43 H 1.09003 * 109.46885 * 59.99943 * 16 15 14 44 44 H 0.96998 * 120.00333 * 0.02562 * 17 16 15 45 45 H 0.97005 * 119.99991 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6618 -2.0982 1.1920 6 6 2.0397 -2.8843 2.2309 7 6 2.7607 -2.3453 3.2862 8 6 3.1441 -3.1464 4.3431 9 6 2.8136 -4.4919 4.3587 10 6 2.0988 -5.0442 3.3183 11 6 1.7044 -4.2449 2.2424 12 6 0.9383 -4.8297 1.1253 13 8 0.5964 -4.1308 0.1911 14 7 0.6174 -6.1386 1.1407 15 6 -0.1428 -6.7195 0.0312 16 6 -0.3713 -8.2093 0.2942 17 7 -1.1320 -8.7899 -0.8150 18 6 -1.4572 -10.1200 -0.7999 19 1 -1.1532 -10.7409 0.0299 20 6 -2.1776 -10.6703 -1.8511 21 7 -2.5477 -9.9138 -2.8626 22 14 -2.6206 -12.4849 -1.8309 23 1 -3.4505 -12.7786 -0.6349 24 1 -3.3858 -12.8213 -3.0584 25 1 -1.3785 -13.2973 -1.7832 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2618 2.1369 34 1 3.1263 -0.6444 1.2951 35 1 3.0217 -1.2973 3.2815 36 1 3.7015 -2.7210 5.1645 37 1 3.1184 -5.1106 5.1897 38 1 1.8431 -6.0933 3.3349 39 1 0.8899 -6.6961 1.8863 40 1 -1.1045 -6.2136 -0.0544 41 1 0.4164 -6.5962 -0.8963 42 1 0.5905 -8.7148 0.3796 43 1 -0.9303 -8.3329 1.2218 44 1 -1.4048 -8.2324 -1.5604 45 1 -3.0507 -10.2984 -3.5974 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135469310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:00:07 Heat of formation + Delta-G solvation = -47.518804 kcal Electronic energy + Delta-G solvation = -24386.134776 eV Core-core repulsion = 20789.954716 eV Total energy + Delta-G solvation = -3596.180061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70915 -39.01866 -37.74146 -35.65411 -35.37402 -33.77507 -31.85442 -30.85839 -30.18932 -27.71257 -27.38108 -26.78246 -24.32228 -23.25484 -22.32349 -21.38481 -20.76751 -20.04620 -18.62992 -17.40091 -17.05938 -16.52357 -16.17271 -15.32417 -15.20832 -15.12379 -14.85486 -14.60406 -14.46738 -14.10740 -13.69090 -13.45783 -13.27715 -13.12182 -12.86587 -12.77636 -12.64861 -12.38919 -12.02046 -11.62878 -11.52514 -11.36078 -11.28960 -11.05725 -10.91700 -10.84551 -10.77715 -10.77254 -10.12662 -9.80125 -9.57754 -9.31917 -8.93035 -8.73980 -8.41255 -6.96388 -5.76672 -3.07287 0.68760 1.15184 2.93607 2.94136 3.33295 3.44673 3.49019 3.50445 3.76178 4.38674 4.47823 4.51652 4.59264 4.62083 4.77348 4.78672 4.88191 5.06334 5.08789 5.10647 5.26463 5.32477 5.42357 5.48259 5.53391 5.59132 5.64719 5.66639 5.81839 5.84476 5.90621 5.99144 6.01685 6.03060 6.15445 6.21401 6.22747 6.43523 6.56651 6.75742 6.82632 7.21233 7.67796 7.74261 8.40775 8.47927 9.52077 10.07422 10.42310 11.45905 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.017307 B = 0.002592 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.442841 B =10799.050519 C =12303.213935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.057 3.943 5 O -0.273 6.273 6 C 0.187 3.813 7 C -0.224 4.224 8 C -0.056 4.056 9 C -0.169 4.169 10 C -0.047 4.047 11 C -0.168 4.168 12 C 0.555 3.445 13 O -0.519 6.519 14 N -0.723 5.723 15 C 0.113 3.887 16 C 0.145 3.855 17 N -0.729 5.729 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.931 5.931 22 Si 0.911 3.089 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.132 0.868 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.134 0.866 39 H 0.396 0.604 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.386 0.614 45 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.460 21.355 15.267 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.018 4.018 5 O -0.184 6.184 6 C 0.138 3.862 7 C -0.242 4.242 8 C -0.075 4.075 9 C -0.187 4.187 10 C -0.066 4.066 11 C -0.172 4.172 12 C 0.341 3.659 13 O -0.395 6.395 14 N -0.376 5.376 15 C -0.010 4.010 16 C 0.016 3.984 17 N -0.374 5.374 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.209 4.209 21 N -0.579 5.579 22 Si 0.741 3.259 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.152 0.848 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.220 0.780 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.048 21.646 14.399 29.088 hybrid contribution -0.043 -0.996 0.344 1.055 sum 13.005 20.650 14.743 28.512 Atomic orbital electron populations 1.21821 0.94066 1.03319 1.01331 1.21093 0.97326 0.95373 0.97423 1.21787 1.00991 0.94985 1.02449 1.23015 0.99284 0.80070 0.99471 1.86385 1.72212 1.20056 1.39776 1.19028 0.90875 0.89669 0.86605 1.21237 1.05669 1.01169 0.96162 1.21102 0.96032 0.93587 0.96740 1.20984 1.02410 0.95530 0.99808 1.21235 0.94366 0.99303 0.91706 1.19459 1.07514 0.91856 0.98405 1.17937 0.79895 0.81996 0.86044 1.90824 1.53357 1.60078 1.35267 1.45834 1.57448 1.09444 1.24829 1.21553 0.95941 0.94608 0.88909 1.20757 0.95405 0.89437 0.92762 1.42185 1.65157 1.08363 1.21742 1.19150 1.28879 0.85436 1.04014 0.91090 1.24782 1.00981 0.98189 0.96930 1.69662 1.43229 1.34874 1.10158 0.86222 0.78041 0.84792 0.76822 1.21205 1.21626 1.21201 0.93083 0.92545 0.91026 0.89781 0.92505 0.91661 0.92485 0.92063 0.92115 0.85024 0.85467 0.85263 0.84806 0.76941 0.91273 0.91281 0.95819 0.95822 0.77982 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.09 37.16 0.34 -1.14 16 2 C -0.09 -0.85 3.16 -90.62 -0.29 -1.14 16 3 C -0.14 -0.92 9.19 37.16 0.34 -0.58 16 4 C 0.06 0.53 4.12 37.16 0.15 0.69 16 5 O -0.27 -3.72 7.74 -40.55 -0.31 -4.03 16 6 C 0.19 2.36 6.70 -38.70 -0.26 2.10 16 7 C -0.22 -2.09 9.03 -39.47 -0.36 -2.44 16 8 C -0.06 -0.44 10.03 -39.53 -0.40 -0.84 16 9 C -0.17 -1.38 10.02 -39.63 -0.40 -1.78 16 10 C -0.05 -0.47 9.54 -39.20 -0.37 -0.84 16 11 C -0.17 -2.23 5.89 -104.85 -0.62 -2.84 16 12 C 0.55 9.07 7.76 -12.47 -0.10 8.98 16 13 O -0.52 -10.41 15.16 -16.58 -0.25 -10.67 16 14 N -0.72 -10.84 5.51 -61.35 -0.34 -11.18 16 15 C 0.11 2.06 5.79 -4.04 -0.02 2.04 16 16 C 0.14 2.91 6.37 -4.04 -0.03 2.89 16 17 N -0.73 -18.93 5.60 -59.91 -0.34 -19.26 16 18 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 19 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 21 N -0.93 -28.63 13.06 55.49 0.72 -27.91 16 22 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 34 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 35 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.13 1.04 6.40 -52.49 -0.34 0.71 16 39 H 0.40 4.69 6.50 -40.82 -0.27 4.42 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.39 10.61 7.67 -40.82 -0.31 10.30 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 373.82 15.07 5.63 5.63 Total: -1.00 -34.71 373.82 -9.22 -43.92 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -7.07 Total: 8.44 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.25 Total: -2.44 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.05 Total: -58.35 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.57 Total: -14.70 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.71 -9.22 -43.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135469310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.594 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds