Wall clock time and date at job start Tue Mar 31 2020 08:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47332 * 2 1 4 4 C 1.53000 * 109.46978 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47119 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99702 * 269.99884 * 5 4 3 7 7 H 1.08006 * 120.00130 * 9.45574 * 6 5 4 8 8 C 1.38811 * 119.99802 * 189.44722 * 6 5 4 9 9 N 1.31615 * 120.00483 * 323.22030 * 8 6 5 10 10 Si 1.86803 * 119.99873 * 143.21211 * 8 6 5 11 11 H 1.48500 * 109.46935 * 90.00241 * 10 8 6 12 12 H 1.48491 * 109.47577 * 210.00263 * 10 8 6 13 13 H 1.48501 * 109.47188 * 330.00490 * 10 8 6 14 14 C 1.46493 * 120.00116 * 90.00033 * 5 4 3 15 15 C 1.50704 * 109.46680 * 269.03558 * 14 5 4 16 16 C 1.38170 * 119.55177 * 94.23628 * 15 14 5 17 17 C 1.39843 * 118.99475 * 179.71091 * 16 15 14 18 18 C 1.48047 * 120.92942 * 180.29778 * 17 16 15 19 19 O 1.21437 * 119.99890 * 0.24774 * 18 17 16 20 20 O 1.34664 * 120.00139 * 180.24696 * 18 17 16 21 21 C 1.45206 * 117.00011 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.46997 * 179.97438 * 21 20 18 23 23 C 1.39873 * 118.14165 * 0.54138 * 17 16 15 24 24 C 1.38123 * 119.00110 * 359.73507 * 23 17 16 25 25 N 1.31796 * 119.55050 * 274.49728 * 15 14 5 26 26 H 1.08997 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47312 * 300.00469 * 1 2 3 28 28 H 1.09007 * 109.47062 * 59.99689 * 1 2 3 29 29 H 1.09001 * 109.46846 * 239.99786 * 2 1 3 30 30 H 1.08999 * 109.46755 * 120.00349 * 2 1 3 31 31 H 1.09000 * 109.47305 * 59.99527 * 3 2 1 32 32 H 1.09011 * 109.47187 * 299.99673 * 3 2 1 33 33 H 1.09001 * 109.46994 * 59.99912 * 4 3 2 34 34 H 1.08994 * 109.47212 * 299.99826 * 4 3 2 35 35 H 0.96999 * 120.00673 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.47225 * 29.03307 * 14 5 4 37 37 H 1.08997 * 109.47296 * 149.03543 * 14 5 4 38 38 H 1.08006 * 120.50053 * 359.97438 * 16 15 14 39 39 H 1.08996 * 109.47002 * 299.99933 * 21 20 18 40 40 H 1.08995 * 109.46806 * 60.00057 * 21 20 18 41 41 H 1.09008 * 109.46992 * 60.00409 * 22 21 20 42 42 H 1.08995 * 109.46965 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47384 * 300.00802 * 22 21 20 44 44 H 1.08009 * 120.50328 * 179.75738 * 23 17 16 45 45 H 1.08007 * 119.55133 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2873 3.4683 -1.1862 7 1 3.9664 3.0202 -2.1151 8 6 4.9314 4.6979 -1.1948 9 7 4.7029 5.5674 -0.2335 10 14 6.1228 5.1185 -2.5708 11 1 5.3859 5.7762 -3.6797 12 1 7.1680 6.0394 -2.0564 13 1 6.7614 3.8744 -3.0702 14 6 4.3022 3.5149 1.2684 15 6 3.0532 4.2451 1.6904 16 6 2.1648 3.6331 2.5537 17 6 1.0126 4.3236 2.9425 18 6 0.0353 3.7112 3.8707 19 8 0.2308 2.5958 4.3091 20 8 -1.0706 4.3912 4.2288 21 6 -1.9845 3.7291 5.1426 22 6 -3.1720 4.6494 5.4320 23 6 0.8068 5.6070 2.4259 24 6 1.7447 6.1401 1.5633 25 7 2.8207 5.4568 1.2269 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9337 0.9283 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 5.1527 6.4268 -0.2397 36 1 4.5732 2.7868 2.0328 37 1 5.1157 4.2293 1.1424 38 1 2.3595 2.6380 2.9259 39 1 -2.3428 2.8040 4.6912 40 1 -1.4659 3.5019 6.0739 41 1 -3.6908 4.8770 4.5007 42 1 -3.8582 4.1522 6.1176 43 1 -2.8133 5.5744 5.8835 44 1 -0.0721 6.1730 2.6976 45 1 1.5949 7.1305 1.1594 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233326924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:35 Heat of formation + Delta-G solvation = -14.777002 kcal Electronic energy + Delta-G solvation = -25944.484184 eV Core-core repulsion = 22349.723915 eV Total energy + Delta-G solvation = -3594.760269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.45515 -39.09733 -36.52525 -36.29757 -34.13774 -32.37109 -31.50305 -31.32565 -30.75792 -27.97004 -25.99250 -24.98787 -23.82901 -22.80464 -22.08732 -21.17303 -20.36650 -19.98513 -17.73119 -16.95052 -16.55341 -16.48896 -15.46691 -15.15881 -14.76232 -14.50868 -14.28488 -14.22142 -13.62277 -13.50195 -13.41672 -13.19043 -12.96352 -12.77216 -12.52755 -12.19346 -12.04521 -11.84184 -11.75459 -11.42795 -11.12040 -10.95421 -10.64416 -10.61005 -10.56035 -10.50922 -10.47487 -10.34618 -10.02805 -9.86023 -9.70247 -9.16677 -8.29296 -8.24126 -8.03794 -6.93717 -5.61800 -2.89309 1.17195 1.85213 2.65502 2.96579 3.46116 3.56556 3.61599 4.53897 4.69938 4.71129 4.76149 4.84849 5.09137 5.19735 5.32443 5.33056 5.38899 5.41531 5.53235 5.57951 5.58180 5.63046 5.74833 5.76431 5.79940 5.97825 6.17139 6.18809 6.28101 6.30672 6.35707 6.38539 6.42678 6.49290 6.57035 6.59413 6.71745 6.79632 6.95912 7.15058 7.38647 7.60155 7.85021 7.95236 8.33505 9.14615 9.25521 9.91735 10.36915 11.27638 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.004635 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.753291 B = 6039.276821 C = 7410.059431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.146 4.146 4 C 0.152 3.848 5 N -0.584 5.584 6 C -0.289 4.289 7 H 0.074 0.926 8 C 0.024 3.976 9 N -0.816 5.816 10 Si 0.859 3.141 11 H -0.293 1.293 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.193 3.807 15 C 0.143 3.857 16 C -0.121 4.121 17 C -0.102 4.102 18 C 0.515 3.485 19 O -0.509 6.509 20 O -0.354 6.354 21 C 0.062 3.938 22 C -0.152 4.152 23 C -0.150 4.150 24 C 0.072 3.928 25 N -0.342 5.342 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.050 0.950 34 H 0.038 0.962 35 H 0.251 0.749 36 H 0.032 0.968 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.130 0.870 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.121 -2.505 9.236 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.186 4.186 4 C 0.025 3.975 5 N -0.303 5.303 6 C -0.416 4.416 7 H 0.092 0.908 8 C -0.178 4.178 9 N -0.455 5.455 10 Si 0.687 3.313 11 H -0.220 1.220 12 H -0.217 1.217 13 H -0.209 1.209 14 C 0.066 3.934 15 C 0.001 3.999 16 C -0.143 4.143 17 C -0.111 4.111 18 C 0.360 3.640 19 O -0.397 6.397 20 O -0.271 6.271 21 C -0.012 4.012 22 C -0.209 4.209 23 C -0.171 4.171 24 C -0.086 4.086 25 N -0.050 5.050 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.134 0.866 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.086 0.914 44 H 0.148 0.852 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.394 -2.301 8.846 13.841 hybrid contribution -0.604 -0.108 -0.153 0.632 sum -10.997 -2.409 8.694 14.224 Atomic orbital electron populations 1.21755 0.96863 1.00521 1.01480 1.21490 0.95056 0.98292 1.01103 1.22388 0.99728 0.94637 1.01850 1.20857 0.91125 0.86387 0.99146 1.44332 1.75564 1.08324 1.02110 1.18916 1.34327 1.03593 0.84785 0.90772 1.24893 1.00096 0.95685 0.97146 1.70689 1.37039 1.04582 1.33213 0.86970 0.83536 0.77557 0.83226 1.21980 1.21697 1.20896 1.20510 0.93253 0.93779 0.85848 1.22852 0.98161 0.90327 0.88520 1.22280 0.93224 1.00482 0.98319 1.19248 0.95226 0.96396 1.00271 1.21409 0.80089 0.83480 0.79017 1.90795 1.75869 1.19744 1.53322 1.86555 1.32193 1.47907 1.60437 1.23006 0.89630 0.96228 0.92366 1.21801 0.96179 1.00217 1.02684 1.22315 1.00913 0.94804 0.99100 1.23183 0.90636 1.00247 0.94560 1.68386 1.15734 1.06267 1.14614 0.93552 0.93210 0.93132 0.92572 0.92656 0.92638 0.92548 0.93166 0.94352 0.93842 0.95000 0.86625 0.85136 0.91272 0.91281 0.91428 0.90324 0.91432 0.85229 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 37.16 0.37 -1.75 16 2 C -0.12 -1.87 5.93 -26.73 -0.16 -2.02 16 3 C -0.15 -2.74 5.54 -26.73 -0.15 -2.89 16 4 C 0.15 3.03 5.71 -4.04 -0.02 3.01 16 5 N -0.58 -13.78 2.51 -174.61 -0.44 -14.22 16 6 C -0.29 -7.61 9.62 -15.06 -0.14 -7.75 16 7 H 0.07 1.99 8.04 -52.48 -0.42 1.57 16 8 C 0.02 0.63 4.91 -17.43 -0.09 0.55 16 9 N -0.82 -21.48 7.74 55.49 0.43 -21.05 16 10 Si 0.86 20.67 29.68 -169.99 -5.04 15.63 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.19 4.36 5.39 -5.20 -0.03 4.33 16 15 C 0.14 3.10 6.23 -82.63 -0.51 2.59 16 16 C -0.12 -2.36 7.32 -39.01 -0.29 -2.64 16 17 C -0.10 -1.84 5.91 -104.66 -0.62 -2.46 16 18 C 0.51 8.72 7.92 34.75 0.28 8.99 16 19 O -0.51 -9.47 16.24 -19.22 -0.31 -9.79 16 20 O -0.35 -5.06 9.58 -40.39 -0.39 -5.45 16 21 C 0.06 0.67 6.19 37.16 0.23 0.90 16 22 C -0.15 -1.17 10.29 37.16 0.38 -0.79 16 23 C -0.15 -2.52 9.71 -39.01 -0.38 -2.90 16 24 C 0.07 1.35 11.17 -17.60 -0.20 1.16 16 25 N -0.34 -7.68 7.30 -9.52 -0.07 -7.75 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.11 5.78 -51.93 -0.30 0.81 16 32 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 33 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.04 0.70 7.89 -51.93 -0.41 0.29 16 35 H 0.25 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.03 0.64 7.79 -51.93 -0.40 0.24 16 37 H 0.12 2.91 5.54 -51.93 -0.29 2.62 16 38 H 0.13 2.47 7.65 -52.48 -0.40 2.07 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.13 1.81 7.71 -52.48 -0.40 1.40 16 45 H 0.15 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -28.99 370.48 -8.82 -37.81 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.26 Total: 0.90 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: -1.33 Total: -1.67 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.08 Total: -43.02 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.70 Total: -15.23 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.04 Total: 15.63 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.99 -8.82 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233326924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.032 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds