Wall clock time and date at job start Tue Mar 31 2020 08:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47332 * 2 1 4 4 C 1.53000 * 109.46978 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47119 * 179.97438 * 4 3 2 6 6 C 1.36937 * 119.99702 * 269.99884 * 5 4 3 7 7 H 1.08006 * 120.00130 * 9.45574 * 6 5 4 8 8 C 1.38811 * 119.99802 * 189.44722 * 6 5 4 9 9 N 1.31615 * 120.00483 * 323.22030 * 8 6 5 10 10 Si 1.86803 * 119.99873 * 143.21211 * 8 6 5 11 11 H 1.48500 * 109.46935 * 90.00241 * 10 8 6 12 12 H 1.48491 * 109.47577 * 210.00263 * 10 8 6 13 13 H 1.48501 * 109.47188 * 330.00490 * 10 8 6 14 14 C 1.46493 * 120.00116 * 90.00033 * 5 4 3 15 15 C 1.50704 * 109.46680 * 269.03558 * 14 5 4 16 16 C 1.38170 * 119.55177 * 94.23628 * 15 14 5 17 17 C 1.39843 * 118.99475 * 179.71091 * 16 15 14 18 18 C 1.48047 * 120.92942 * 180.29778 * 17 16 15 19 19 O 1.21437 * 119.99890 * 0.24774 * 18 17 16 20 20 O 1.34664 * 120.00139 * 180.24696 * 18 17 16 21 21 C 1.45206 * 117.00011 * 180.02562 * 20 18 17 22 22 C 1.53003 * 109.46997 * 179.97438 * 21 20 18 23 23 C 1.39873 * 118.14165 * 0.54138 * 17 16 15 24 24 C 1.38123 * 119.00110 * 359.73507 * 23 17 16 25 25 N 1.31796 * 119.55050 * 274.49728 * 15 14 5 26 26 H 1.08997 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47312 * 300.00469 * 1 2 3 28 28 H 1.09007 * 109.47062 * 59.99689 * 1 2 3 29 29 H 1.09001 * 109.46846 * 239.99786 * 2 1 3 30 30 H 1.08999 * 109.46755 * 120.00349 * 2 1 3 31 31 H 1.09000 * 109.47305 * 59.99527 * 3 2 1 32 32 H 1.09011 * 109.47187 * 299.99673 * 3 2 1 33 33 H 1.09001 * 109.46994 * 59.99912 * 4 3 2 34 34 H 1.08994 * 109.47212 * 299.99826 * 4 3 2 35 35 H 0.96999 * 120.00673 * 180.02562 * 9 8 6 36 36 H 1.08996 * 109.47225 * 29.03307 * 14 5 4 37 37 H 1.08997 * 109.47296 * 149.03543 * 14 5 4 38 38 H 1.08006 * 120.50053 * 359.97438 * 16 15 14 39 39 H 1.08996 * 109.47002 * 299.99933 * 21 20 18 40 40 H 1.08995 * 109.46806 * 60.00057 * 21 20 18 41 41 H 1.09008 * 109.46992 * 60.00409 * 22 21 20 42 42 H 1.08995 * 109.46965 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.47384 * 300.00802 * 22 21 20 44 44 H 1.08009 * 120.50328 * 179.75738 * 23 17 16 45 45 H 1.08007 * 119.55133 * 180.02562 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 0.0006 5 7 4.0585 2.8236 0.0000 6 6 4.2873 3.4683 -1.1862 7 1 3.9664 3.0202 -2.1151 8 6 4.9314 4.6979 -1.1948 9 7 4.7029 5.5674 -0.2335 10 14 6.1228 5.1185 -2.5708 11 1 5.3859 5.7762 -3.6797 12 1 7.1680 6.0394 -2.0564 13 1 6.7614 3.8744 -3.0702 14 6 4.3022 3.5149 1.2684 15 6 3.0532 4.2451 1.6904 16 6 2.1648 3.6331 2.5537 17 6 1.0126 4.3236 2.9425 18 6 0.0353 3.7112 3.8707 19 8 0.2308 2.5958 4.3091 20 8 -1.0706 4.3912 4.2288 21 6 -1.9845 3.7291 5.1426 22 6 -3.1720 4.6494 5.4320 23 6 0.8068 5.6070 2.4259 24 6 1.7447 6.1401 1.5633 25 7 2.8207 5.4568 1.2269 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9337 0.9283 -0.8891 34 1 3.9330 0.9287 0.8908 35 1 5.1527 6.4268 -0.2397 36 1 4.5732 2.7868 2.0328 37 1 5.1157 4.2293 1.1424 38 1 2.3595 2.6380 2.9259 39 1 -2.3428 2.8040 4.6912 40 1 -1.4659 3.5019 6.0739 41 1 -3.6908 4.8770 4.5007 42 1 -3.8582 4.1522 6.1176 43 1 -2.8133 5.5744 5.8835 44 1 -0.0721 6.1730 2.6976 45 1 1.5949 7.1305 1.1594 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233326924.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:44:34 Heat of formation + Delta-G solvation = -27.954773 kcal Electronic energy + Delta-G solvation = -25945.055615 eV Core-core repulsion = 22349.723915 eV Total energy + Delta-G solvation = -3595.331701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77228 -40.54952 -37.97950 -37.71725 -35.63813 -33.68889 -33.23870 -32.41288 -32.27829 -29.49339 -27.73876 -26.31241 -25.43358 -23.76827 -23.56714 -22.61135 -21.75993 -21.55137 -19.18334 -18.53396 -17.97918 -17.64110 -17.07045 -16.61486 -16.32009 -16.18117 -15.63028 -15.37030 -15.31075 -15.06496 -14.87501 -14.42377 -14.24526 -13.98811 -13.69350 -13.60906 -13.37729 -13.18310 -12.96158 -12.69768 -12.68436 -12.49321 -12.38514 -12.16362 -11.96901 -11.90275 -11.84178 -11.78587 -11.59983 -11.57010 -11.33143 -10.68299 -10.11447 -9.82040 -9.69316 -8.76984 -7.58415 -4.87386 -0.24586 0.36240 1.49365 1.50632 1.58488 1.59336 1.65892 2.63852 3.10638 3.32010 3.54363 3.78461 3.83592 3.98531 3.99958 4.06232 4.12496 4.13010 4.27887 4.31596 4.33107 4.38897 4.53500 4.68421 4.76383 4.81530 4.86713 4.92684 4.93698 5.01521 5.03359 5.04207 5.09039 5.13892 5.15608 5.19761 5.35833 5.36462 5.47147 5.60801 5.68967 5.84610 5.97688 6.41374 6.58051 7.27664 7.65424 8.02254 8.45584 9.26918 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.004635 C = 0.003778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.753291 B = 6039.276821 C = 7410.059431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.150 3.850 5 N -0.598 5.598 6 C -0.303 4.303 7 H 0.060 0.940 8 C -0.010 4.010 9 N -0.820 5.820 10 Si 0.910 3.090 11 H -0.299 1.299 12 H -0.293 1.293 13 H -0.286 1.286 14 C 0.195 3.805 15 C 0.126 3.874 16 C -0.121 4.121 17 C -0.109 4.109 18 C 0.521 3.479 19 O -0.529 6.529 20 O -0.351 6.351 21 C 0.051 3.949 22 C -0.145 4.145 23 C -0.126 4.126 24 C 0.062 3.938 25 N -0.384 5.384 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.042 0.958 32 H 0.027 0.973 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.245 0.755 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.132 0.868 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.166 0.834 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.145 -2.829 10.424 17.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.172 4.172 4 C 0.024 3.976 5 N -0.319 5.319 6 C -0.431 4.431 7 H 0.078 0.922 8 C -0.211 4.211 9 N -0.460 5.460 10 Si 0.738 3.262 11 H -0.226 1.226 12 H -0.219 1.219 13 H -0.213 1.213 14 C 0.069 3.931 15 C -0.015 4.015 16 C -0.142 4.142 17 C -0.118 4.118 18 C 0.367 3.633 19 O -0.420 6.420 20 O -0.267 6.267 21 C -0.022 4.022 22 C -0.202 4.202 23 C -0.146 4.146 24 C -0.097 4.097 25 N -0.092 5.092 26 H 0.089 0.911 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.104 0.896 38 H 0.150 0.850 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.183 0.817 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -12.437 -2.628 10.048 16.204 hybrid contribution -0.086 0.019 -0.433 0.442 sum -12.523 -2.609 9.615 16.002 Atomic orbital electron populations 1.21721 0.95816 1.01931 1.00814 1.21452 0.95951 0.95813 1.02194 1.22188 0.98685 0.96618 0.99718 1.20978 0.91873 0.84868 0.99845 1.44358 1.76463 1.09465 1.01612 1.18926 1.35033 1.03657 0.85455 0.92222 1.25296 1.01019 0.95917 0.98883 1.70860 1.36919 1.04227 1.33977 0.86212 0.81901 0.76778 0.81260 1.22643 1.21944 1.21273 1.20279 0.93192 0.93675 0.85977 1.22539 0.98208 0.90740 0.89992 1.22156 0.93567 1.00505 0.98001 1.19425 0.95125 0.96807 1.00424 1.21135 0.80524 0.83093 0.78549 1.90785 1.76484 1.20606 1.54081 1.86541 1.31519 1.47797 1.60855 1.23407 0.89923 0.97129 0.91706 1.21834 0.95031 0.99925 1.03381 1.22592 1.00991 0.94128 0.96911 1.23556 0.90199 1.00941 0.94964 1.68209 1.17887 1.07088 1.16042 0.91086 0.94128 0.93557 0.91571 0.91413 0.93895 0.95446 0.93406 0.92492 0.94500 0.93212 0.89599 0.84997 0.91230 0.90957 0.91277 0.87810 0.91058 0.81697 0.81481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.89 9.91 71.98 0.71 -3.17 16 2 C -0.12 -3.40 5.93 30.59 0.18 -3.21 16 3 C -0.13 -4.97 5.54 30.59 0.17 -4.80 16 4 C 0.15 6.02 5.71 86.38 0.49 6.52 16 5 N -0.60 -28.83 2.51 -706.35 -1.78 -30.61 16 6 C -0.30 -16.36 9.62 84.03 0.81 -15.56 16 7 H 0.06 3.32 8.04 -2.91 -0.02 3.30 16 8 C -0.01 -0.51 4.91 84.86 0.42 -0.10 16 9 N -0.82 -44.22 7.74 21.65 0.17 -44.06 16 10 Si 0.91 43.63 29.68 68.60 2.04 45.67 16 11 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 12 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 14 C 0.20 9.04 5.39 85.64 0.46 9.51 16 15 C 0.13 5.54 6.23 42.55 0.27 5.81 16 16 C -0.12 -4.67 7.32 22.64 0.17 -4.51 16 17 C -0.11 -3.76 5.91 -19.89 -0.12 -3.88 16 18 C 0.52 16.73 7.92 70.42 0.56 17.29 16 19 O -0.53 -19.00 16.24 20.04 0.33 -18.68 16 20 O -0.35 -9.13 9.58 -55.73 -0.53 -9.66 16 21 C 0.05 0.99 6.19 71.98 0.45 1.44 16 22 C -0.14 -1.76 10.29 71.98 0.74 -1.02 16 23 C -0.13 -3.95 9.71 22.64 0.22 -3.73 16 24 C 0.06 2.25 11.17 84.67 0.95 3.20 16 25 N -0.38 -17.42 7.30 -184.04 -1.34 -18.77 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.04 1.71 5.78 -2.39 -0.01 1.70 16 32 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 33 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 34 H 0.06 2.05 7.89 -2.39 -0.02 2.03 16 35 H 0.24 13.04 8.31 -92.71 -0.77 12.27 16 36 H 0.05 2.04 7.79 -2.39 -0.02 2.02 16 37 H 0.09 4.48 5.54 -2.39 -0.01 4.47 16 38 H 0.13 4.97 7.65 -2.91 -0.02 4.95 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.17 3.97 7.71 -2.91 -0.02 3.95 16 45 H 0.17 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -63.40 370.48 6.30 -57.09 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.96 Total: 15.23 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 6.47 Total: 3.79 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -2.95 Total: -93.43 kcal Atomic # 8 Polarization: -28.13 SS G_CDS: -0.21 Total: -28.34 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.04 Total: 45.67 kcal Total: -63.40 6.30 -57.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233326924.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.137 kcal (2) G-P(sol) polarization free energy of solvation -63.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds