Wall clock time and date at job start Tue Mar 31 2020 08:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53042 * 109.46266 * 94.24372 * 3 2 1 5 5 C 1.53183 * 109.31393 * 181.38542 * 4 3 2 6 6 N 1.46925 * 108.77848 * 305.36668 * 5 4 3 7 7 C 1.34781 * 120.63155 * 233.58960 * 6 5 4 8 8 O 1.21352 * 119.99996 * 8.69817 * 7 6 5 9 9 C 1.49450 * 119.99926 * 188.70271 * 7 6 5 10 10 O 1.21347 * 120.00206 * 6.74459 * 9 7 6 11 11 N 1.34772 * 119.99862 * 186.74215 * 9 7 6 12 12 C 1.46506 * 120.00026 * 179.72554 * 11 9 7 13 13 C 1.52992 * 109.47223 * 180.27639 * 12 11 9 14 14 C 1.53005 * 109.47304 * 299.99796 * 13 12 11 15 15 C 1.52999 * 109.47479 * 59.99699 * 13 12 11 16 16 C 1.50699 * 109.47290 * 180.02562 * 13 12 11 17 17 H 1.08007 * 119.99737 * 359.97438 * 16 13 12 18 18 C 1.37884 * 120.00303 * 180.02562 * 16 13 12 19 19 N 1.31504 * 119.99830 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 119.99854 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47447 * 59.99644 * 20 18 16 22 22 H 1.48501 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47484 * 299.99480 * 20 18 16 24 24 C 1.46924 * 118.73764 * 53.85801 * 6 5 4 25 25 C 1.53042 * 109.46251 * 214.31406 * 3 2 1 26 26 H 4.44657 * 5.63514 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.46059 * 334.27127 * 3 2 1 28 28 H 1.09003 * 109.49459 * 61.43302 * 4 3 2 29 29 H 1.08998 * 109.52401 * 301.35776 * 4 3 2 30 30 H 1.09003 * 109.58769 * 185.57887 * 5 4 3 31 31 H 1.08997 * 109.70547 * 65.22317 * 5 4 3 32 32 H 0.96993 * 120.00271 * 359.97438 * 11 9 7 33 33 H 1.08999 * 109.47226 * 300.28034 * 12 11 9 34 34 H 1.09000 * 109.46858 * 60.27056 * 12 11 9 35 35 H 1.09002 * 109.46921 * 59.99802 * 14 13 12 36 36 H 1.09002 * 109.47402 * 180.02562 * 14 13 12 37 37 H 1.09001 * 109.46841 * 300.00077 * 14 13 12 38 38 H 1.09006 * 109.46715 * 60.00057 * 15 13 12 39 39 H 1.08995 * 109.47292 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.47057 * 300.00065 * 15 13 12 41 41 H 0.97000 * 120.00402 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.58568 * 65.93497 * 24 6 5 43 43 H 1.09003 * 109.58701 * 186.35351 * 24 6 5 44 44 H 1.08999 * 109.49447 * 298.56659 * 25 3 2 45 45 H 1.09002 * 109.49454 * 58.62802 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.1077 -1.4390 5 6 4.6873 0.0732 -1.4378 6 7 5.1834 1.1268 -0.5419 7 6 6.0772 2.0357 -0.9796 8 8 6.3609 2.0889 -2.1583 9 6 6.7189 2.9780 -0.0132 10 8 6.5304 2.8468 1.1783 11 7 7.5071 3.9734 -0.4651 12 6 8.1314 4.9008 0.4818 13 6 8.9624 5.9308 -0.2858 14 6 10.0494 5.2132 -1.0886 15 6 8.0547 6.7101 -1.2396 16 6 9.6050 6.8844 0.6882 17 1 9.4371 6.7677 1.7488 18 6 10.4065 7.9065 0.2255 19 7 10.6105 8.0490 -1.0658 20 14 11.2025 9.0888 1.4329 21 1 12.0839 8.3326 2.3583 22 1 12.0092 10.0886 0.6880 23 1 10.1476 9.7851 2.2124 24 6 4.6911 1.1672 0.8418 25 6 3.1554 1.1927 0.8134 26 1 -1.0500 0.0002 0.0000 27 1 3.0096 -0.9250 0.4462 28 1 2.8134 1.0450 -1.8775 29 1 2.7736 -0.7288 -2.0241 30 1 5.0576 0.2482 -2.4479 31 1 5.0328 -0.8986 -1.0853 32 1 7.6582 4.0781 -1.4175 33 1 7.3571 5.4120 1.0537 34 1 8.7781 4.3456 1.1613 35 1 9.5850 4.5232 -1.7931 36 1 10.6418 5.9471 -1.6351 37 1 10.6961 4.6581 -0.4091 38 1 7.2803 7.2213 -0.6676 39 1 8.6466 7.4442 -1.7861 40 1 7.5903 6.0201 -1.9441 41 1 11.1747 8.7678 -1.3913 42 1 5.0348 0.2825 1.3779 43 1 5.0638 2.0642 1.3362 44 1 2.8129 2.1198 0.3537 45 1 2.7722 1.1285 1.8319 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326917435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:55 Heat of formation + Delta-G solvation = -13.228972 kcal Electronic energy + Delta-G solvation = -25337.692334 eV Core-core repulsion = 21742.999193 eV Total energy + Delta-G solvation = -3594.693142 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.84480 -38.88459 -37.77376 -36.55910 -34.58634 -33.33756 -31.58628 -31.30797 -30.92150 -26.96230 -25.74338 -25.73741 -25.14221 -23.83363 -22.88492 -21.07694 -19.84069 -18.85692 -18.41431 -17.58992 -16.88637 -16.00123 -15.87682 -15.33719 -15.18007 -14.92062 -14.57447 -14.50806 -14.20817 -14.15367 -13.73417 -13.29754 -12.94976 -12.81205 -12.56507 -12.23147 -11.93558 -11.67251 -11.53830 -11.43194 -11.39368 -11.22363 -11.03491 -10.87114 -10.75067 -10.41978 -10.33447 -10.32726 -10.21000 -9.67164 -9.44850 -9.02692 -8.89393 -8.81115 -8.61771 -8.38486 -6.03908 -4.14930 1.60032 2.45957 2.54285 2.57772 3.28769 3.33645 3.36365 3.38201 3.69446 4.00506 4.37035 4.46690 4.61142 4.70043 4.80683 4.86477 5.03189 5.17082 5.22682 5.36185 5.46287 5.52168 5.63406 5.77056 5.78920 5.88504 6.03912 6.08078 6.20468 6.26461 6.44813 6.65911 6.83220 6.83712 6.92036 6.98408 7.04279 7.31185 7.34899 7.53266 7.57498 7.67757 7.93641 7.98452 8.10559 8.29167 8.38302 8.85012 9.51010 10.97475 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.030414 B = 0.002737 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.395652 B =10226.985556 C =10583.930901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.178 4.178 3 C 0.017 3.983 4 C -0.123 4.123 5 C 0.108 3.892 6 N -0.588 5.588 7 C 0.510 3.490 8 O -0.522 6.522 9 C 0.497 3.503 10 O -0.527 6.527 11 N -0.676 5.676 12 C 0.127 3.873 13 C 0.056 3.944 14 C -0.134 4.134 15 C -0.134 4.134 16 C -0.508 4.508 17 H 0.058 0.942 18 C 0.067 3.933 19 N -0.884 5.884 20 Si 0.895 3.105 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.069 3.931 25 C -0.126 4.126 26 H 0.216 0.784 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.411 0.589 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.009 0.991 36 H 0.087 0.913 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.087 0.913 40 H 0.008 0.992 41 H 0.261 0.739 42 H 0.070 0.930 43 H 0.149 0.851 44 H 0.071 0.929 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.613 -15.480 0.286 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C -0.001 4.001 4 C -0.162 4.162 5 C -0.014 4.014 6 N -0.323 5.323 7 C 0.293 3.707 8 O -0.397 6.397 9 C 0.278 3.722 10 O -0.407 6.407 11 N -0.327 5.327 12 C 0.005 3.995 13 C 0.056 3.944 14 C -0.192 4.192 15 C -0.192 4.192 16 C -0.547 4.547 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.522 5.522 20 Si 0.723 3.277 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.052 4.052 25 C -0.164 4.164 26 H 0.233 0.767 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.249 0.751 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.028 0.972 36 H 0.106 0.894 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.027 0.973 41 H 0.071 0.929 42 H 0.088 0.912 43 H 0.166 0.834 44 H 0.089 0.911 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.435 -15.376 0.344 21.093 hybrid contribution 0.125 0.535 0.204 0.586 sum -14.310 -14.841 0.548 20.624 Atomic orbital electron populations 1.24900 0.95906 1.01184 1.00828 1.23056 0.94225 1.00183 1.00331 1.18385 0.84468 1.00217 0.97000 1.21925 0.95103 1.03590 0.95535 1.21706 0.93296 0.90246 0.96193 1.47948 1.41809 1.28953 1.13560 1.20414 0.80162 0.81760 0.88399 1.90743 1.61927 1.70136 1.16920 1.19983 0.81259 0.82620 0.88340 1.90431 1.61022 1.72751 1.16493 1.46269 1.45495 1.27941 1.12999 1.21974 0.96093 0.90069 0.91342 1.18375 0.91517 0.91004 0.93553 1.21864 0.99769 0.98878 0.98666 1.21862 0.98444 1.00360 0.98507 1.20904 1.29210 1.11943 0.92625 0.92393 1.24882 0.96087 0.97332 0.95174 1.69791 1.38209 1.32037 1.12208 0.86613 0.79396 0.80653 0.81062 1.20270 1.21326 1.20275 1.23025 0.92684 1.07858 0.81610 1.22076 0.95886 0.97739 1.00686 0.76708 0.88808 0.90840 0.90174 0.88347 0.90814 0.75112 0.91878 0.91870 0.97248 0.89432 0.95322 0.95333 0.89410 0.97301 0.92857 0.91155 0.83392 0.91063 0.90089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.78 19.25 29.55 0.57 -1.21 16 2 C -0.18 -1.68 12.56 -37.13 -0.47 -2.15 16 3 C 0.02 0.15 2.52 -93.37 -0.24 -0.09 16 4 C -0.12 -1.04 5.32 -26.62 -0.14 -1.18 16 5 C 0.11 1.04 6.44 -3.72 -0.02 1.01 16 6 N -0.59 -7.20 2.97 -173.02 -0.51 -7.71 16 7 C 0.51 7.85 7.73 -11.58 -0.09 7.76 16 8 O -0.52 -9.01 15.93 5.49 0.09 -8.92 16 9 C 0.50 8.44 7.74 -11.59 -0.09 8.35 16 10 O -0.53 -9.32 13.18 5.50 0.07 -9.25 16 11 N -0.68 -12.24 4.95 -60.73 -0.30 -12.54 16 12 C 0.13 2.58 4.50 -4.04 -0.02 2.56 16 13 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -3.04 8.08 37.16 0.30 -2.74 16 15 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 16 C -0.51 -13.00 8.01 -34.44 -0.28 -13.28 16 17 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 19 N -0.88 -23.40 9.35 55.43 0.52 -22.89 16 20 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C 0.07 0.75 6.01 -3.49 -0.02 0.73 16 25 C -0.13 -1.17 5.33 -26.39 -0.14 -1.31 16 26 H 0.22 1.10 7.80 -54.09 -0.42 0.68 16 27 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.04 7.01 -51.93 -0.36 0.68 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.41 7.41 5.65 -40.82 -0.23 7.18 16 33 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 36 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.09 2.19 6.07 -51.93 -0.32 1.87 16 40 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 41 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.15 1.96 4.30 -54.84 -0.24 1.72 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 360.71 15.07 5.44 5.44 Total: -1.00 -27.95 360.71 -7.01 -34.96 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -6.79 Total: 6.92 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: -0.50 Total: -1.41 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: -0.30 Total: -43.14 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: 0.16 Total: -18.17 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.95 -7.01 -34.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326917435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.730 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds