Wall clock time and date at job start Tue Mar 31 2020 08:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53042 * 109.46266 * 94.24372 * 3 2 1 5 5 C 1.53183 * 109.31393 * 181.38542 * 4 3 2 6 6 N 1.46925 * 108.77848 * 305.36668 * 5 4 3 7 7 C 1.34781 * 120.63155 * 233.58960 * 6 5 4 8 8 O 1.21352 * 119.99996 * 8.69817 * 7 6 5 9 9 C 1.49450 * 119.99926 * 188.70271 * 7 6 5 10 10 O 1.21347 * 120.00206 * 6.74459 * 9 7 6 11 11 N 1.34772 * 119.99862 * 186.74215 * 9 7 6 12 12 C 1.46506 * 120.00026 * 179.72554 * 11 9 7 13 13 C 1.52992 * 109.47223 * 180.27639 * 12 11 9 14 14 C 1.53005 * 109.47304 * 299.99796 * 13 12 11 15 15 C 1.52999 * 109.47479 * 59.99699 * 13 12 11 16 16 C 1.50699 * 109.47290 * 180.02562 * 13 12 11 17 17 H 1.08007 * 119.99737 * 359.97438 * 16 13 12 18 18 C 1.37884 * 120.00303 * 180.02562 * 16 13 12 19 19 N 1.31504 * 119.99830 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 119.99854 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47447 * 59.99644 * 20 18 16 22 22 H 1.48501 * 109.47188 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47484 * 299.99480 * 20 18 16 24 24 C 1.46924 * 118.73764 * 53.85801 * 6 5 4 25 25 C 1.53042 * 109.46251 * 214.31406 * 3 2 1 26 26 H 4.44657 * 5.63514 * 180.02562 * 4 1 2 27 27 H 1.09002 * 109.46059 * 334.27127 * 3 2 1 28 28 H 1.09003 * 109.49459 * 61.43302 * 4 3 2 29 29 H 1.08998 * 109.52401 * 301.35776 * 4 3 2 30 30 H 1.09003 * 109.58769 * 185.57887 * 5 4 3 31 31 H 1.08997 * 109.70547 * 65.22317 * 5 4 3 32 32 H 0.96993 * 120.00271 * 359.97438 * 11 9 7 33 33 H 1.08999 * 109.47226 * 300.28034 * 12 11 9 34 34 H 1.09000 * 109.46858 * 60.27056 * 12 11 9 35 35 H 1.09002 * 109.46921 * 59.99802 * 14 13 12 36 36 H 1.09002 * 109.47402 * 180.02562 * 14 13 12 37 37 H 1.09001 * 109.46841 * 300.00077 * 14 13 12 38 38 H 1.09006 * 109.46715 * 60.00057 * 15 13 12 39 39 H 1.08995 * 109.47292 * 179.97438 * 15 13 12 40 40 H 1.08994 * 109.47057 * 300.00065 * 15 13 12 41 41 H 0.97000 * 120.00402 * 180.02562 * 19 18 16 42 42 H 1.09006 * 109.58568 * 65.93497 * 24 6 5 43 43 H 1.09003 * 109.58701 * 186.35351 * 24 6 5 44 44 H 1.08999 * 109.49447 * 298.56659 * 25 3 2 45 45 H 1.09002 * 109.49454 * 58.62802 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1559 0.1077 -1.4390 5 6 4.6873 0.0732 -1.4378 6 7 5.1834 1.1268 -0.5419 7 6 6.0772 2.0357 -0.9796 8 8 6.3609 2.0889 -2.1583 9 6 6.7189 2.9780 -0.0132 10 8 6.5304 2.8468 1.1783 11 7 7.5071 3.9734 -0.4651 12 6 8.1314 4.9008 0.4818 13 6 8.9624 5.9308 -0.2858 14 6 10.0494 5.2132 -1.0886 15 6 8.0547 6.7101 -1.2396 16 6 9.6050 6.8844 0.6882 17 1 9.4371 6.7677 1.7488 18 6 10.4065 7.9065 0.2255 19 7 10.6105 8.0490 -1.0658 20 14 11.2025 9.0888 1.4329 21 1 12.0839 8.3326 2.3583 22 1 12.0092 10.0886 0.6880 23 1 10.1476 9.7851 2.2124 24 6 4.6911 1.1672 0.8418 25 6 3.1554 1.1927 0.8134 26 1 -1.0500 0.0002 0.0000 27 1 3.0096 -0.9250 0.4462 28 1 2.8134 1.0450 -1.8775 29 1 2.7736 -0.7288 -2.0241 30 1 5.0576 0.2482 -2.4479 31 1 5.0328 -0.8986 -1.0853 32 1 7.6582 4.0781 -1.4175 33 1 7.3571 5.4120 1.0537 34 1 8.7781 4.3456 1.1613 35 1 9.5850 4.5232 -1.7931 36 1 10.6418 5.9471 -1.6351 37 1 10.6961 4.6581 -0.4091 38 1 7.2803 7.2213 -0.6676 39 1 8.6466 7.4442 -1.7861 40 1 7.5903 6.0201 -1.9441 41 1 11.1747 8.7678 -1.3913 42 1 5.0348 0.2825 1.3779 43 1 5.0638 2.0642 1.3362 44 1 2.8129 2.1198 0.3537 45 1 2.7722 1.1285 1.8319 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326917435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:54 Heat of formation + Delta-G solvation = -28.815284 kcal Electronic energy + Delta-G solvation = -25338.368208 eV Core-core repulsion = 21742.999193 eV Total energy + Delta-G solvation = -3595.369015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.03412 -40.08611 -38.84366 -38.21641 -35.59724 -34.85259 -32.75402 -32.35325 -32.09375 -28.24904 -27.58689 -27.35300 -26.67272 -24.80380 -23.95871 -22.09973 -21.02010 -20.54721 -19.18496 -18.75059 -18.07761 -17.72901 -17.16985 -16.70594 -16.60923 -15.96835 -15.79373 -15.65741 -15.11738 -15.05578 -14.99042 -14.74904 -14.52159 -14.14377 -14.04533 -13.49174 -13.20411 -13.10732 -12.83277 -12.68039 -12.61466 -12.46743 -12.29194 -12.25342 -12.16041 -12.12283 -12.09372 -11.50041 -11.27742 -11.06106 -10.97778 -10.73085 -10.40709 -10.27063 -10.05714 -9.84674 -8.00633 -6.17213 0.32580 1.30779 1.46801 1.48172 1.54484 1.88603 1.92376 2.10342 2.43387 2.55056 3.23301 3.31221 3.38642 3.78631 3.91539 4.05720 4.14946 4.29866 4.35168 4.41334 4.48563 4.61135 4.68298 4.75552 4.80554 4.84342 4.90645 4.98200 5.04139 5.06158 5.08187 5.17503 5.21106 5.26350 5.30950 5.40766 5.54698 5.64890 5.68123 5.94691 6.11473 6.19286 6.26890 6.41718 6.69911 6.72167 6.86706 6.95991 7.50776 8.98458 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.030414 B = 0.002737 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.395652 B =10226.985556 C =10583.930901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.210 4.210 3 C 0.021 3.979 4 C -0.116 4.116 5 C 0.105 3.895 6 N -0.578 5.578 7 C 0.510 3.490 8 O -0.546 6.546 9 C 0.498 3.502 10 O -0.534 6.534 11 N -0.680 5.680 12 C 0.143 3.857 13 C 0.050 3.950 14 C -0.124 4.124 15 C -0.124 4.124 16 C -0.526 4.526 17 H 0.053 0.947 18 C 0.026 3.974 19 N -0.902 5.902 20 Si 0.948 3.052 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.070 3.930 25 C -0.119 4.119 26 H 0.241 0.759 27 H 0.112 0.888 28 H 0.056 0.944 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.412 0.588 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.029 0.971 36 H 0.063 0.937 37 H 0.023 0.977 38 H 0.024 0.976 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.260 0.740 42 H 0.091 0.909 43 H 0.127 0.873 44 H 0.054 0.946 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.022 -17.223 0.806 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.210 4.210 3 C 0.003 3.997 4 C -0.154 4.154 5 C -0.016 4.016 6 N -0.311 5.311 7 C 0.292 3.708 8 O -0.424 6.424 9 C 0.279 3.721 10 O -0.414 6.414 11 N -0.331 5.331 12 C 0.021 3.979 13 C 0.050 3.950 14 C -0.182 4.182 15 C -0.182 4.182 16 C -0.564 4.564 17 H 0.071 0.929 18 C -0.174 4.174 19 N -0.540 5.540 20 Si 0.775 3.225 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.051 4.051 25 C -0.157 4.157 26 H 0.258 0.742 27 H 0.130 0.870 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.119 0.881 32 H 0.250 0.750 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.144 0.856 44 H 0.073 0.927 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.878 -17.152 0.886 23.390 hybrid contribution 0.457 1.008 0.077 1.109 sum -15.422 -16.144 0.963 22.347 Atomic orbital electron populations 1.25675 0.96846 1.00075 0.99645 1.23389 0.94910 1.01259 1.01458 1.18372 0.84327 1.00370 0.96656 1.21866 0.93997 1.03561 0.95964 1.21949 0.94070 0.90300 0.95277 1.48094 1.40240 1.28278 1.14520 1.20060 0.80946 0.82140 0.87637 1.90735 1.63222 1.70997 1.17448 1.20318 0.80722 0.82396 0.88619 1.90460 1.61000 1.72939 1.17011 1.46122 1.46147 1.28317 1.12547 1.21560 0.95501 0.89755 0.91106 1.18373 0.91880 0.91353 0.93419 1.21713 0.99425 0.98437 0.98634 1.21711 0.97895 1.00101 0.98511 1.21218 1.29537 1.12724 0.92947 0.92908 1.25504 0.96698 0.98710 0.96487 1.69917 1.38516 1.32320 1.13270 0.85769 0.78535 0.78906 0.79306 1.20070 1.21236 1.20060 1.23007 0.93736 1.07633 0.80747 1.21994 0.94494 0.97640 1.01561 0.74211 0.86999 0.92552 0.88169 0.89336 0.88061 0.75029 0.92457 0.92541 0.95246 0.91854 0.95733 0.95705 0.91837 0.95265 0.93073 0.89050 0.85643 0.92671 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.97 19.25 74.32 1.43 -1.53 16 2 C -0.21 -3.50 12.56 31.12 0.39 -3.11 16 3 C 0.02 0.30 2.52 -12.57 -0.03 0.27 16 4 C -0.12 -1.71 5.32 30.67 0.16 -1.54 16 5 C 0.11 1.79 6.44 86.36 0.56 2.35 16 6 N -0.58 -13.28 2.97 -819.66 -2.43 -15.71 16 7 C 0.51 15.32 7.73 87.27 0.67 15.99 16 8 O -0.55 -18.57 15.93 -3.25 -0.05 -18.62 16 9 C 0.50 16.68 7.74 87.27 0.68 17.36 16 10 O -0.53 -18.63 13.18 -3.24 -0.04 -18.67 16 11 N -0.68 -24.41 4.95 -464.42 -2.30 -26.71 16 12 C 0.14 5.83 4.50 86.38 0.39 6.21 16 13 C 0.05 2.31 0.50 -52.93 -0.03 2.29 16 14 C -0.12 -5.64 8.08 71.98 0.58 -5.06 16 15 C -0.12 -5.63 8.08 71.98 0.58 -5.05 16 16 C -0.53 -27.09 8.01 25.60 0.21 -26.88 16 17 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 18 C 0.03 1.34 5.15 84.66 0.44 1.78 16 19 N -0.90 -48.29 9.35 21.45 0.20 -48.09 16 20 Si 0.95 42.00 29.54 68.60 2.03 44.03 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.07 1.39 6.01 86.51 0.52 1.91 16 25 C -0.12 -2.00 5.33 30.82 0.16 -1.84 16 26 H 0.24 1.76 7.80 -4.42 -0.03 1.72 16 27 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.75 7.01 -2.39 -0.02 1.73 16 31 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.41 14.65 5.65 -92.71 -0.52 14.13 16 33 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.03 1.17 6.86 -2.39 -0.02 1.16 16 36 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 37 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 40 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 41 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 42 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.13 3.20 4.30 -48.52 -0.21 2.99 16 44 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -59.65 360.71 4.38 -55.27 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.27 Total: 25.38 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 6.71 Total: 3.13 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -4.53 Total: -90.51 kcal Atomic # 8 Polarization: -37.20 SS G_CDS: -0.09 Total: -37.29 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -59.65 4.38 -55.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326917435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.451 kcal (2) G-P(sol) polarization free energy of solvation -59.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds