Wall clock time and date at job start Tue Mar 31 2020 08:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46764 * 2 1 4 4 O 1.42897 * 109.46951 * 119.99655 * 2 1 3 5 5 C 1.35901 * 116.99809 * 84.85486 * 4 2 1 6 6 C 1.38760 * 120.05381 * 174.34829 * 5 4 2 7 7 C 1.38123 * 119.93998 * 179.70388 * 6 5 4 8 8 C 1.38291 * 120.05580 * 0.58933 * 7 6 5 9 9 C 1.38244 * 120.11027 * 359.68624 * 8 7 6 10 10 C 1.50704 * 119.96834 * 180.02562 * 9 8 7 11 11 N 1.46500 * 109.46809 * 269.97380 * 10 9 8 12 12 C 1.46495 * 120.00320 * 270.00217 * 11 10 9 13 13 C 1.34777 * 119.99692 * 90.00506 * 11 10 9 14 14 O 1.21586 * 120.00202 * 359.97438 * 13 11 10 15 15 N 1.34781 * 119.99566 * 179.97438 * 13 11 10 16 16 C 1.46499 * 119.99780 * 179.97438 * 15 13 11 17 17 C 1.50694 * 109.47427 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99586 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00551 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99889 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00148 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47318 * 90.00655 * 21 19 17 23 23 H 1.48507 * 109.46846 * 210.00454 * 21 19 17 24 24 H 1.48500 * 109.47472 * 330.00105 * 21 19 17 25 25 C 1.38158 * 120.05501 * 0.02562 * 9 8 7 26 26 H 1.09003 * 109.47473 * 59.99970 * 1 2 3 27 27 H 1.09002 * 109.47453 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47586 * 300.00008 * 1 2 3 29 29 H 1.08991 * 109.47348 * 240.00056 * 2 1 3 30 30 H 1.09005 * 109.46883 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47102 * 299.99509 * 3 2 1 32 32 H 1.09004 * 109.47452 * 60.00003 * 3 2 1 33 33 H 1.07998 * 120.02915 * 359.97094 * 6 5 4 34 34 H 1.08007 * 119.97191 * 180.29931 * 7 6 5 35 35 H 1.07999 * 119.94192 * 179.70260 * 8 7 6 36 36 H 1.09003 * 109.47343 * 29.97441 * 10 9 8 37 37 H 1.08999 * 109.46907 * 149.97534 * 10 9 8 38 38 H 1.09000 * 109.47112 * 89.99927 * 12 11 10 39 39 H 1.08995 * 109.47505 * 210.00819 * 12 11 10 40 40 H 1.09008 * 109.47024 * 330.00314 * 12 11 10 41 41 H 0.96992 * 120.00211 * 0.02562 * 15 13 11 42 42 H 1.09002 * 109.47117 * 300.00280 * 16 15 13 43 43 H 1.09002 * 109.47180 * 59.99943 * 16 15 13 44 44 H 0.97001 * 120.00028 * 179.97438 * 20 19 17 45 45 H 1.08008 * 120.02767 * 180.02562 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0062 -0.6736 1.1668 5 6 2.1095 -2.0269 1.0989 6 6 2.6742 -2.7344 2.1506 7 6 2.7724 -4.1104 2.0818 8 6 2.3196 -4.7819 0.9609 9 6 1.7618 -4.0788 -0.0906 10 6 1.2689 -4.8138 -1.3104 11 7 2.3569 -4.9274 -2.2849 12 6 2.5489 -3.8826 -3.2936 13 6 3.1813 -5.9932 -2.2533 14 8 3.0223 -6.8602 -1.4158 15 7 4.1819 -6.0979 -3.1501 16 6 5.0784 -7.2561 -3.1155 17 6 6.1022 -7.1320 -4.2142 18 1 6.0870 -6.2757 -4.8722 19 6 7.0591 -8.1110 -4.3788 20 7 7.0779 -9.1535 -3.5772 21 14 8.3286 -7.9567 -5.7403 22 1 9.5177 -7.2293 -5.2282 23 1 8.7345 -9.3111 -6.1944 24 1 7.7430 -7.2071 -6.8807 25 6 1.6559 -2.7029 -0.0241 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 3.0326 -2.2100 3.0240 34 1 3.2074 -4.6620 2.9022 35 1 2.4017 -5.8574 0.9070 36 1 0.9329 -5.8102 -1.0232 37 1 0.4390 -4.2646 -1.7549 38 1 3.2228 -3.1200 -2.9032 39 1 2.9791 -4.3213 -4.1939 40 1 1.5874 -3.4289 -3.5344 41 1 4.3090 -5.4061 -3.8180 42 1 5.5842 -7.2954 -2.1507 43 1 4.4992 -8.1683 -3.2594 44 1 7.7509 -9.8424 -3.6932 45 1 1.2197 -2.1540 -0.8457 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426440607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:25 Heat of formation + Delta-G solvation = -65.578121 kcal Electronic energy + Delta-G solvation = -25085.669417 eV Core-core repulsion = 21488.706246 eV Total energy + Delta-G solvation = -3596.963171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.49044 -40.87082 -38.80645 -36.63135 -36.11987 -34.48192 -34.05542 -32.48078 -30.82689 -29.34839 -28.24155 -28.08203 -26.61577 -24.50236 -24.18426 -22.55832 -21.71003 -20.99145 -19.52422 -18.89096 -17.99784 -17.42479 -17.14123 -16.84985 -16.64664 -16.47192 -16.29797 -15.45864 -15.18104 -15.04144 -14.87053 -14.59184 -14.30400 -14.04503 -13.88483 -13.67657 -13.59707 -13.40320 -13.23497 -13.05610 -12.92061 -12.79064 -12.70752 -12.59668 -12.43791 -12.19728 -12.06060 -11.68350 -11.55720 -11.46907 -11.13513 -10.79700 -10.02530 -9.88082 -9.43532 -9.12447 -8.28140 -6.44818 0.26900 0.46898 1.43116 1.46175 1.57115 1.87552 2.24640 2.26917 2.39001 2.82685 3.06704 3.30739 3.71263 3.85536 3.88976 4.03034 4.05313 4.20798 4.27304 4.31961 4.38956 4.52597 4.60812 4.61330 4.73207 4.76440 4.85144 4.87270 4.89424 4.96813 5.02574 5.06721 5.20703 5.27617 5.29915 5.34334 5.45194 5.50249 5.56852 5.68825 5.72621 5.82575 5.85999 6.11973 6.51688 6.66775 7.20589 7.25720 7.73018 8.84314 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.018358 B = 0.002971 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.816281 B = 9422.050786 C = 9853.276128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.065 3.935 3 C -0.146 4.146 4 O -0.324 6.324 5 C 0.120 3.880 6 C -0.161 4.161 7 C -0.090 4.090 8 C -0.156 4.156 9 C -0.072 4.072 10 C 0.171 3.829 11 N -0.626 5.626 12 C 0.074 3.926 13 C 0.689 3.311 14 O -0.640 6.640 15 N -0.725 5.725 16 C 0.287 3.713 17 C -0.554 4.554 18 H 0.082 0.918 19 C 0.004 3.996 20 N -0.931 5.931 21 Si 0.986 3.014 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.254 1.254 25 C -0.187 4.187 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.140 0.860 34 H 0.139 0.861 35 H 0.103 0.897 36 H 0.070 0.930 37 H 0.125 0.875 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.110 0.890 41 H 0.402 0.598 42 H -0.019 1.019 43 H -0.015 1.015 44 H 0.269 0.731 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.350 22.947 3.832 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.010 3.990 3 C -0.203 4.203 4 O -0.239 6.239 5 C 0.074 3.926 6 C -0.180 4.180 7 C -0.108 4.108 8 C -0.175 4.175 9 C -0.073 4.073 10 C 0.049 3.951 11 N -0.363 5.363 12 C -0.068 4.068 13 C 0.391 3.609 14 O -0.522 6.522 15 N -0.380 5.380 16 C 0.164 3.836 17 C -0.592 4.592 18 H 0.100 0.900 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.809 3.191 22 H -0.197 1.197 23 H -0.209 1.209 24 H -0.178 1.178 25 C -0.206 4.206 26 H 0.112 0.888 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.158 0.842 34 H 0.157 0.843 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.143 0.857 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.239 0.761 42 H -0.001 1.001 43 H 0.003 0.997 44 H 0.078 0.922 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.333 22.300 4.576 26.901 hybrid contribution 0.898 -0.563 -0.497 1.171 sum -13.435 21.737 4.079 25.877 Atomic orbital electron populations 1.22371 0.93904 1.03062 1.04025 1.22740 0.95316 0.94198 0.86739 1.21884 1.01748 0.92647 1.04065 1.86109 1.81520 1.15847 1.40443 1.19050 0.95760 0.83038 0.94724 1.20633 1.04181 0.93588 0.99590 1.21142 0.97866 0.93727 0.98034 1.21185 1.01265 1.00050 0.94961 1.20188 0.97822 0.93737 0.95570 1.20347 0.88176 1.00676 0.85921 1.47053 1.32336 1.21987 1.34886 1.21990 1.04422 0.90071 0.90291 1.16316 0.80342 0.82567 0.81721 1.90811 1.75713 1.43730 1.41946 1.45458 1.31270 1.26788 1.34461 1.18368 0.87028 0.82723 0.95476 1.21582 1.13705 1.08324 1.15624 0.89964 1.26076 1.00057 0.94216 0.99239 1.70149 1.36049 1.11070 1.39681 0.85142 0.78016 0.77648 0.78311 1.19657 1.20889 1.17765 1.21251 1.06453 0.93776 0.99104 0.88765 0.92354 0.91866 0.90378 0.92392 0.88220 0.91634 0.84197 0.84318 0.87881 0.91154 0.85717 0.92409 0.91207 0.87190 0.76093 1.00065 0.99698 0.92241 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 9.17 71.98 0.66 -1.26 16 2 C 0.07 0.92 2.85 30.59 0.09 1.01 16 3 C -0.15 -1.56 9.56 71.98 0.69 -0.88 16 4 O -0.32 -6.91 9.80 -92.43 -0.91 -7.82 16 5 C 0.12 2.85 6.60 22.51 0.15 3.00 16 6 C -0.16 -4.03 9.99 22.37 0.22 -3.81 16 7 C -0.09 -2.46 10.04 22.25 0.22 -2.23 16 8 C -0.16 -4.93 9.70 22.28 0.22 -4.71 16 9 C -0.07 -1.94 5.46 -19.88 -0.11 -2.05 16 10 C 0.17 4.45 5.57 85.63 0.48 4.93 16 11 N -0.63 -18.96 2.86 -869.31 -2.48 -21.44 16 12 C 0.07 1.49 10.25 127.77 1.31 2.80 16 13 C 0.69 29.87 8.28 179.05 1.48 31.35 16 14 O -0.64 -33.50 15.44 -3.99 -0.06 -33.56 16 15 N -0.72 -32.62 5.41 -482.30 -2.61 -35.23 16 16 C 0.29 16.39 5.43 85.63 0.46 16.85 16 17 C -0.55 -30.79 9.28 25.60 0.24 -30.55 16 18 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 19 C 0.00 0.21 5.46 84.65 0.46 0.67 16 20 N -0.93 -57.04 13.29 21.45 0.28 -56.76 16 21 Si 0.99 42.68 29.54 68.60 2.03 44.70 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 25 C -0.19 -4.14 7.89 22.36 0.18 -3.97 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.06 0.72 6.91 -2.39 -0.02 0.70 16 28 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.08 1.02 6.31 -2.39 -0.02 1.00 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 34 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.10 3.83 7.57 -2.91 -0.02 3.81 16 36 H 0.07 2.17 7.36 -2.39 -0.02 2.16 16 37 H 0.12 2.06 7.84 -2.39 -0.02 2.05 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.07 1.44 6.36 -2.39 -0.02 1.42 16 40 H 0.11 1.30 7.89 -2.38 -0.02 1.28 16 41 H 0.40 15.12 6.05 -92.71 -0.56 14.56 16 42 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 43 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.15 2.43 5.43 -2.91 -0.02 2.41 16 Total: -1.00 -77.46 372.06 3.42 -74.04 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.43 Total: 24.91 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.75 Total: 11.14 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -4.81 Total: -113.43 kcal Atomic # 8 Polarization: -40.41 SS G_CDS: -0.97 Total: -41.37 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -77.46 3.42 -74.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426440607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.464 kcal (2) G-P(sol) polarization free energy of solvation -77.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds