Wall clock time and date at job start Tue Mar 31 2020 09:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.69097 * 2 1 4 4 C 1.53272 * 109.57616 * 239.66489 * 2 1 3 5 5 C 1.53160 * 109.43296 * 189.96624 * 4 2 1 6 6 C 1.53378 * 109.22231 * 69.33197 * 5 4 2 7 7 C 1.51113 * 108.25376 * 311.15383 * 6 5 4 8 8 N 1.30583 * 127.08218 * 196.00975 * 7 6 5 9 9 C 1.33406 * 109.70532 * 179.97438 * 8 7 6 10 10 C 1.36926 * 107.82692 * 0.28130 * 9 8 7 11 11 C 1.46582 * 126.92607 * 179.76642 * 10 9 8 12 12 O 1.21612 * 120.00215 * 159.31549 * 11 10 9 13 13 O 1.34879 * 120.00087 * 339.31757 * 11 10 9 14 14 C 1.45197 * 117.00172 * 185.18150 * 13 11 10 15 15 C 1.52998 * 109.47243 * 175.28115 * 14 13 11 16 16 C 1.53001 * 109.47226 * 303.53495 * 15 14 13 17 17 C 1.53000 * 109.46997 * 63.53546 * 15 14 13 18 18 C 1.50697 * 109.47181 * 183.53594 * 15 14 13 19 19 H 1.08001 * 120.00256 * 359.97438 * 18 15 14 20 20 C 1.37878 * 119.99880 * 180.02562 * 18 15 14 21 21 N 1.31517 * 120.00171 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99908 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47290 * 59.99690 * 22 20 18 24 24 H 1.48500 * 109.47111 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47154 * 299.99616 * 22 20 18 26 26 N 1.34854 * 123.91653 * 16.01474 * 7 6 5 27 27 H 1.09001 * 109.47216 * 207.09814 * 1 2 3 28 28 H 1.09009 * 109.46825 * 327.09946 * 1 2 3 29 29 H 1.09000 * 109.47508 * 87.09182 * 1 2 3 30 30 H 1.08996 * 109.47485 * 69.98125 * 4 2 1 31 31 H 1.09001 * 109.48018 * 309.95688 * 4 2 1 32 32 H 1.08996 * 109.51630 * 309.40928 * 5 4 2 33 33 H 1.08998 * 109.51456 * 189.25539 * 5 4 2 34 34 H 1.09002 * 109.70905 * 191.46906 * 6 5 4 35 35 H 1.08998 * 109.70833 * 70.84930 * 6 5 4 36 36 H 1.08007 * 126.08694 * 180.02562 * 9 8 7 37 37 H 1.08999 * 109.47259 * 295.28735 * 14 13 11 38 38 H 1.09000 * 109.46744 * 55.28359 * 14 13 11 39 39 H 1.09011 * 109.46635 * 60.00040 * 16 15 14 40 40 H 1.08999 * 109.47161 * 179.97438 * 16 15 14 41 41 H 1.08997 * 109.47135 * 300.00367 * 16 15 14 42 42 H 1.08998 * 109.47233 * 66.68105 * 17 15 14 43 43 H 1.08997 * 109.47467 * 186.68156 * 17 15 14 44 44 H 1.09000 * 109.47310 * 306.68623 * 17 15 14 45 45 H 0.96994 * 119.99821 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8972 1.0262 0.0000 4 6 2.0435 -0.7294 -1.2464 5 6 3.5546 -0.9469 -1.1232 6 6 3.8281 -1.9778 -0.0210 7 6 3.0394 -1.5804 1.2052 8 7 3.2110 -2.0117 2.4257 9 6 2.3240 -1.4323 3.2365 10 6 1.5488 -0.5949 2.4796 11 6 0.4421 0.2442 2.9484 12 8 0.0824 1.2005 2.2889 13 8 -0.1774 -0.0444 4.1112 14 6 -1.3376 0.7574 4.4567 15 6 -1.9710 0.2122 5.7383 16 6 -2.3215 -1.2647 5.5457 17 6 -0.9818 0.3547 6.8967 18 6 -3.2241 0.9893 6.0492 19 1 -3.5372 1.7922 5.3982 20 6 -3.9704 0.6761 7.1655 21 7 -3.5889 -0.3012 7.9586 22 14 -5.5241 1.6390 7.5506 23 1 -6.4843 1.4996 6.4264 24 1 -6.1388 1.1099 8.7945 25 1 -5.1846 3.0727 7.7368 26 7 2.0207 -0.6968 1.1909 27 1 -0.3634 -0.9149 0.4681 28 1 -0.3633 0.8629 0.5583 29 1 -0.3634 0.0521 -1.0263 30 1 1.8338 -0.1285 -2.1313 31 1 1.5435 -1.6939 -1.3350 32 1 4.0385 -0.0042 -0.8680 33 1 3.9481 -1.3141 -2.0710 34 1 4.8923 -1.9904 0.2147 35 1 3.5137 -2.9662 -0.3560 36 1 2.2310 -1.5976 4.2997 37 1 -1.0308 1.7914 4.6144 38 1 -2.0641 0.7137 3.6453 39 1 -1.4150 -1.8268 5.3207 40 1 -2.7723 -1.6532 6.4588 41 1 -3.0262 -1.3662 4.7203 42 1 -0.8234 1.4116 7.1113 43 1 -1.3842 -0.1392 7.7811 44 1 -0.0329 -0.1065 6.6231 45 1 -4.1141 -0.5217 8.7437 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845517536.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:38 Heat of formation + Delta-G solvation = -36.607267 kcal Electronic energy + Delta-G solvation = -26031.358906 eV Core-core repulsion = 22435.652005 eV Total energy + Delta-G solvation = -3595.706901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.58495 -39.66719 -37.33418 -36.60981 -34.87139 -33.85880 -31.31716 -30.88379 -29.71906 -27.39989 -25.75524 -25.61277 -25.12295 -23.33726 -23.09532 -22.10956 -20.50051 -19.15460 -18.84738 -17.74473 -16.72758 -15.97155 -15.82559 -15.76842 -15.43118 -14.94193 -14.78286 -14.53363 -14.48016 -13.63421 -13.42270 -13.17419 -13.03055 -12.87792 -12.41197 -12.40111 -11.88605 -11.83640 -11.51423 -11.50506 -11.49522 -11.21273 -11.04097 -10.85703 -10.72898 -10.50730 -10.37235 -10.19202 -9.91778 -9.84613 -9.74392 -9.42519 -9.33284 -8.76140 -8.48098 -8.38519 -6.02538 -4.14042 1.24864 2.23892 2.74019 3.22023 3.28829 3.33517 3.33840 3.40048 3.98589 4.15971 4.28570 4.31155 4.38246 4.82471 4.88149 4.95814 5.04618 5.17988 5.24241 5.28850 5.32324 5.37897 5.40397 5.53066 5.60830 5.68038 5.81857 5.95330 6.07064 6.11408 6.22649 6.43275 6.53807 6.75301 6.96464 6.98986 7.03364 7.13712 7.15875 7.40176 7.63135 7.69955 7.85737 8.04158 8.13169 8.21472 8.37554 8.85480 9.51365 10.99158 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.029992 B = 0.003253 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.345252 B = 8606.020269 C = 9180.486254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.133 3.867 3 H 0.096 0.904 4 C -0.132 4.132 5 C -0.128 4.128 6 C -0.035 4.035 7 C 0.230 3.770 8 N -0.496 5.496 9 C 0.064 3.936 10 C -0.067 4.067 11 C 0.536 3.464 12 O -0.518 6.518 13 O -0.333 6.333 14 C 0.087 3.913 15 C 0.071 3.929 16 C -0.130 4.130 17 C -0.128 4.128 18 C -0.515 4.515 19 H 0.056 0.944 20 C 0.070 3.930 21 N -0.881 5.881 22 Si 0.895 3.105 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 N -0.419 5.419 27 H 0.059 0.941 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.188 0.812 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.018 0.982 40 H 0.084 0.916 41 H 0.021 0.979 42 H 0.026 0.974 43 H 0.081 0.919 44 H 0.017 0.983 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.877 -2.539 -17.450 21.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.114 0.886 4 C -0.170 4.170 5 C -0.166 4.166 6 C -0.073 4.073 7 C -0.032 4.032 8 N -0.214 5.214 9 C -0.090 4.090 10 C -0.181 4.181 11 C 0.381 3.619 12 O -0.409 6.409 13 O -0.248 6.248 14 C 0.015 3.985 15 C 0.071 3.929 16 C -0.187 4.187 17 C -0.186 4.186 18 C -0.553 4.553 19 H 0.074 0.926 20 C -0.132 4.132 21 N -0.519 5.519 22 Si 0.723 3.277 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 N -0.102 5.102 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.205 0.795 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.037 0.963 40 H 0.103 0.897 41 H 0.041 0.959 42 H 0.045 0.955 43 H 0.100 0.900 44 H 0.036 0.964 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.167 -2.792 -17.314 21.930 hybrid contribution -1.646 1.301 0.022 2.099 sum 11.520 -1.491 -17.293 20.832 Atomic orbital electron populations 1.22606 0.92282 1.05508 1.03544 1.21692 0.96688 0.96409 0.82074 0.88569 1.22072 0.96308 1.01950 0.96684 1.21730 0.95860 0.99809 0.99192 1.20288 0.99470 0.99707 0.87879 1.23473 0.91252 0.92518 0.95923 1.69987 1.25522 1.26248 0.99664 1.22917 0.92368 0.93565 1.00167 1.19556 1.03583 1.09298 0.85676 1.19399 0.80288 0.82032 0.80143 1.90676 1.65512 1.28771 1.55986 1.86614 1.43263 1.59450 1.35472 1.23753 0.81764 0.93280 0.99735 1.18249 0.93196 0.93929 0.87515 1.21765 0.97858 0.97229 1.01868 1.21776 0.96037 0.99155 1.01635 1.20886 1.07470 1.17316 1.09652 0.92562 1.24848 0.97576 0.95023 0.95784 1.69836 1.38776 1.28727 1.14562 0.86606 0.83153 0.80252 0.77675 1.20268 1.21191 1.20231 1.45330 1.25404 1.32599 1.06886 0.92222 0.87538 0.91024 0.89060 0.90407 0.90968 0.89688 0.88275 0.88843 0.79514 0.92331 0.92417 0.96270 0.89727 0.95948 0.95506 0.90031 0.96413 0.92816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 8.13 37.16 0.30 -1.89 16 2 C 0.13 1.45 3.28 -67.82 -0.22 1.23 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.13 -0.93 5.10 -26.51 -0.14 -1.07 16 5 C -0.13 -0.77 5.96 -26.45 -0.16 -0.92 16 6 C -0.03 -0.27 6.33 -27.49 -0.17 -0.45 16 7 C 0.23 2.93 7.63 -155.32 -1.19 1.75 16 8 N -0.50 -7.49 11.19 -10.34 -0.12 -7.61 16 9 C 0.06 1.00 11.77 -17.34 -0.20 0.80 16 10 C -0.07 -1.10 6.54 -82.38 -0.54 -1.64 16 11 C 0.54 9.89 7.29 34.10 0.25 10.14 16 12 O -0.52 -9.92 12.74 -19.35 -0.25 -10.16 16 13 O -0.33 -6.73 8.68 -40.98 -0.36 -7.09 16 14 C 0.09 1.91 4.30 37.16 0.16 2.07 16 15 C 0.07 1.74 0.58 -155.66 -0.09 1.65 16 16 C -0.13 -3.12 8.07 37.16 0.30 -2.82 16 17 C -0.13 -3.08 8.11 37.16 0.30 -2.78 16 18 C -0.52 -13.69 8.01 -34.44 -0.28 -13.96 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.07 1.86 5.15 -17.82 -0.09 1.76 16 21 N -0.88 -23.92 9.43 55.43 0.52 -23.40 16 22 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 N -0.42 -5.70 2.96 -102.75 -0.30 -6.01 16 27 H 0.06 0.81 7.93 -51.93 -0.41 0.40 16 28 H 0.11 1.57 5.04 -51.93 -0.26 1.31 16 29 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 32 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.19 2.69 8.06 -52.48 -0.42 2.26 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 39 H 0.02 0.42 7.59 -51.92 -0.39 0.02 16 40 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 2.11 6.28 -51.93 -0.33 1.78 16 44 H 0.02 0.38 7.60 -51.93 -0.39 -0.02 16 45 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 354.07 15.07 5.34 5.34 Total: -1.00 -29.76 354.07 -9.07 -38.83 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.12 Total: 0.50 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: -1.76 Total: -6.13 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.10 Total: -37.02 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.60 Total: -17.25 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.76 -9.07 -38.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845517536.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.218 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds