Wall clock time and date at job start Tue Mar 31 2020 09:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47397 * 2 1 4 4 C 1.50699 * 109.47483 * 120.00138 * 2 1 3 5 5 O 1.21278 * 120.00470 * 119.99761 * 4 2 1 6 6 N 1.34785 * 120.00045 * 300.00117 * 4 2 1 7 7 C 1.46499 * 120.00041 * 179.97438 * 6 4 2 8 8 H 1.08994 * 108.45880 * 325.00066 * 7 6 4 9 9 C 1.52528 * 108.51843 * 207.29001 * 7 6 4 10 10 C 1.50303 * 105.32642 * 149.25072 * 9 7 6 11 11 C 1.54834 * 110.69790 * 97.83515 * 10 9 7 12 12 C 1.54898 * 110.14357 * 321.12807 * 11 10 9 13 13 N 1.43431 * 116.08106 * 318.64116 * 12 11 10 14 14 C 1.36936 * 120.53902 * 271.54907 * 13 12 11 15 15 H 1.08000 * 120.00505 * 140.23642 * 14 13 12 16 16 C 1.38817 * 119.99688 * 320.23888 * 14 13 12 17 17 N 1.31617 * 119.99877 * 156.31985 * 16 14 13 18 18 Si 1.86801 * 119.99848 * 336.32179 * 16 14 13 19 19 H 1.48499 * 109.46977 * 95.57399 * 18 16 14 20 20 H 1.48507 * 109.46997 * 215.57084 * 18 16 14 21 21 H 1.48498 * 109.47236 * 335.57262 * 18 16 14 22 22 C 1.46237 * 108.52122 * 82.71573 * 7 6 4 23 23 C 1.50697 * 109.47416 * 240.00106 * 2 1 3 24 24 C 1.34512 * 125.79191 * 119.99537 * 23 2 1 25 25 C 1.41383 * 106.84530 * 179.97438 * 24 23 2 26 26 C 1.34515 * 106.83843 * 0.02562 * 25 24 23 27 27 O 1.34302 * 108.42021 * 0.02562 * 26 25 24 28 28 H 1.09009 * 109.46581 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47012 * 299.99771 * 1 2 3 30 30 H 1.08998 * 109.47529 * 60.00189 * 1 2 3 31 31 H 0.96999 * 119.99404 * 0.02562 * 6 4 2 32 32 H 1.09008 * 110.24544 * 268.32465 * 9 7 6 33 33 H 1.08994 * 110.25573 * 30.38152 * 9 7 6 34 34 H 1.09002 * 109.27519 * 337.52254 * 10 9 7 35 35 H 1.09001 * 109.26425 * 218.14544 * 10 9 7 36 36 H 1.08999 * 109.36126 * 200.92239 * 11 10 9 37 37 H 1.09004 * 109.25059 * 81.26821 * 11 10 9 38 38 H 1.08991 * 108.16180 * 196.91875 * 12 11 10 39 39 H 1.09006 * 108.15685 * 80.35293 * 12 11 10 40 40 H 0.97000 * 119.99822 * 179.97438 * 17 16 14 41 41 H 1.09000 * 109.84405 * 299.15281 * 22 7 6 42 42 H 1.09005 * 109.84772 * 60.06861 * 22 7 6 43 43 H 1.08005 * 126.58074 * 359.70900 * 24 23 2 44 44 H 1.08003 * 126.58501 * 179.97438 * 25 24 23 45 45 H 1.08002 * 125.79208 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7296 -1.6965 1.1192 6 7 1.7068 -0.2500 2.4546 7 6 2.1947 -0.9409 3.6507 8 1 2.2245 -2.0106 3.4434 9 6 1.2088 -0.6951 4.7883 10 6 1.2816 -1.9246 5.6497 11 6 2.2182 -1.6901 6.8601 12 6 3.4497 -0.8558 6.4279 13 7 4.0300 -1.1977 5.1616 14 6 5.0011 -2.1596 5.0782 15 1 5.0004 -2.8577 4.2542 16 6 5.9865 -2.2373 6.0529 17 7 6.6181 -3.3731 6.2610 18 14 6.4159 -0.7299 7.0691 19 1 5.6625 -0.7643 8.3483 20 1 7.8735 -0.7233 7.3532 21 1 6.0532 0.4961 6.3137 22 6 3.5556 -0.4835 3.9287 23 6 2.0323 -0.7104 -1.2304 24 6 2.8089 -0.1719 -2.1877 25 6 3.0388 -1.1850 -3.1467 26 6 2.3885 -2.2818 -2.7184 27 8 1.7800 -1.9882 -1.5577 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.1488 0.5384 2.5436 32 1 1.5031 0.1860 5.3587 33 1 0.2005 -0.5712 4.3936 34 1 1.6623 -2.7568 5.0576 35 1 0.2830 -2.1700 6.0112 36 1 2.5521 -2.6516 7.2503 37 1 1.6736 -1.1543 7.6376 38 1 4.2180 -0.9625 7.1936 39 1 3.1546 0.1930 6.3943 40 1 7.3069 -3.4273 6.9418 41 1 4.2060 -0.7248 3.0880 42 1 3.5565 0.5930 4.1001 43 1 3.1814 0.8414 -2.2200 44 1 3.6236 -1.0952 -4.0503 45 1 2.3599 -3.2364 -3.2227 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034400521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:35 Heat of formation + Delta-G solvation = 7.806315 kcal Electronic energy + Delta-G solvation = -26108.739657 eV Core-core repulsion = 22514.958674 eV Total energy + Delta-G solvation = -3593.780983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.56148 -39.95919 -37.95939 -34.61039 -34.29741 -33.15376 -32.83005 -31.30099 -30.15766 -28.54592 -26.35011 -24.96658 -24.41594 -22.99813 -21.75972 -21.12225 -20.27251 -19.85944 -19.28349 -17.59440 -16.90873 -16.38716 -16.15319 -15.76170 -15.39649 -15.10994 -14.57926 -14.31129 -14.07214 -13.80425 -13.45829 -13.14898 -12.91853 -12.79828 -12.75742 -12.66450 -12.46917 -12.04082 -11.89672 -11.81511 -11.75472 -11.61958 -11.09755 -10.73452 -10.41180 -10.36725 -10.11726 -9.98352 -9.89242 -9.65115 -9.56210 -9.44618 -8.86546 -8.45521 -8.38766 -6.73964 -5.95912 -3.39194 1.74490 2.60242 2.81538 3.00091 3.34357 3.37115 3.49005 3.55169 4.39521 4.56422 4.66556 4.78164 4.91443 5.05187 5.06486 5.10156 5.19194 5.32322 5.37313 5.37750 5.48845 5.53151 5.78695 5.81071 5.88516 5.90123 5.91652 5.95455 6.09473 6.12086 6.17723 6.36707 6.48719 6.53953 6.58804 6.64880 6.74917 6.80145 6.86619 6.94009 7.02222 7.17808 7.70726 8.13247 8.41032 8.46623 9.06291 9.75200 10.17974 11.19542 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.003931 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.611981 B = 7120.814382 C = 7973.942416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 H 0.123 0.877 4 C 0.509 3.491 5 O -0.516 6.516 6 N -0.729 5.729 7 C 0.132 3.868 8 H 0.089 0.911 9 C -0.118 4.118 10 C -0.106 4.106 11 C -0.142 4.142 12 C 0.147 3.853 13 N -0.593 5.593 14 C -0.266 4.266 15 H 0.077 0.923 16 C 0.041 3.959 17 N -0.896 5.896 18 Si 0.876 3.124 19 H -0.286 1.286 20 H -0.301 1.301 21 H -0.271 1.271 22 C 0.129 3.871 23 C 0.016 3.984 24 C -0.210 4.210 25 C -0.217 4.217 26 C -0.038 4.038 27 O -0.159 6.159 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.393 0.607 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.043 0.957 39 H 0.028 0.972 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.030 0.970 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.068 9.867 -12.779 22.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.053 4.053 3 H 0.140 0.860 4 C 0.293 3.707 5 O -0.390 6.390 6 N -0.381 5.381 7 C 0.028 3.972 8 H 0.107 0.893 9 C -0.156 4.156 10 C -0.144 4.144 11 C -0.182 4.182 12 C 0.020 3.980 13 N -0.316 5.316 14 C -0.395 4.395 15 H 0.095 0.905 16 C -0.160 4.160 17 N -0.536 5.536 18 Si 0.706 3.294 19 H -0.214 1.214 20 H -0.229 1.229 21 H -0.196 1.196 22 C 0.004 3.996 23 C -0.035 4.035 24 C -0.229 4.229 25 C -0.236 4.236 26 C -0.106 4.106 27 O -0.054 6.054 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.227 0.773 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.164 0.836 44 H 0.164 0.836 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -14.548 8.822 -12.597 21.170 hybrid contribution 0.346 1.205 0.514 1.355 sum -14.202 10.028 -12.083 21.172 Atomic orbital electron populations 1.21792 0.91578 1.03627 1.03067 1.19930 0.97966 0.99254 0.88139 0.85960 1.20303 0.80929 0.85087 0.84376 1.90809 1.36416 1.25505 1.86311 1.46426 1.53751 1.32018 1.05936 1.20922 0.95135 0.98803 0.82326 0.89309 1.21342 0.97644 0.99964 0.96669 1.21325 0.98151 0.97507 0.97459 1.22813 0.97438 1.01656 0.96318 1.20694 0.93474 0.94879 0.88988 1.44025 1.42141 1.44222 1.01194 1.18750 1.02867 1.05998 1.11849 0.90540 1.25511 0.96145 0.96215 0.98105 1.69899 1.26462 1.23818 1.33452 0.86918 0.76452 0.86132 0.79888 1.21368 1.22924 1.19571 1.20744 0.93059 0.94391 0.91420 1.21541 1.01870 0.82786 0.97296 1.21511 1.03790 1.01347 0.96229 1.21752 1.05746 0.93653 1.02474 1.24013 0.99176 1.00667 0.86772 1.84033 1.58868 1.27599 1.34914 0.91442 0.91092 0.91107 0.77344 0.90999 0.91997 0.91295 0.93559 0.92050 0.93296 0.93957 0.95380 0.92732 0.90974 0.95142 0.83629 0.83614 0.78303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.07 37.15 0.34 -0.83 16 2 C -0.03 -0.34 3.13 -92.93 -0.29 -0.63 16 3 H 0.12 0.99 8.10 -51.93 -0.42 0.57 16 4 C 0.51 7.69 6.99 -10.98 -0.08 7.61 16 5 O -0.52 -10.73 15.13 -1.20 -0.02 -10.75 16 6 N -0.73 -9.62 4.80 -57.21 -0.27 -9.89 16 7 C 0.13 2.24 1.99 -71.39 -0.14 2.10 16 8 H 0.09 1.85 6.30 -51.93 -0.33 1.52 16 9 C -0.12 -1.69 5.24 -28.32 -0.15 -1.84 16 10 C -0.11 -1.75 5.66 -27.11 -0.15 -1.90 16 11 C -0.14 -2.62 6.41 -24.76 -0.16 -2.78 16 12 C 0.15 3.17 4.21 -4.66 -0.02 3.15 16 13 N -0.59 -14.18 2.14 -175.08 -0.37 -14.55 16 14 C -0.27 -7.64 9.92 -15.06 -0.15 -7.79 16 15 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 16 C 0.04 1.21 5.28 -17.43 -0.09 1.12 16 17 N -0.90 -27.84 13.97 55.49 0.78 -27.06 16 18 Si 0.88 22.53 25.26 -169.99 -4.29 18.24 16 19 H -0.29 -7.11 6.73 56.52 0.38 -6.73 16 20 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 21 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.13 2.62 5.50 -5.20 -0.03 2.59 16 23 C 0.02 0.22 5.20 -35.63 -0.19 0.03 16 24 C -0.21 -2.55 10.78 -39.70 -0.43 -2.98 16 25 C -0.22 -2.50 10.91 -39.70 -0.43 -2.93 16 26 C -0.04 -0.45 12.09 29.42 0.36 -0.10 16 27 O -0.16 -2.35 10.35 -1.06 -0.01 -2.36 16 28 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.07 0.43 7.56 -51.93 -0.39 0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.39 3.63 8.00 -40.82 -0.33 3.30 16 32 H 0.07 1.01 6.27 -51.92 -0.33 0.69 16 33 H 0.06 0.72 8.03 -51.93 -0.42 0.30 16 34 H 0.07 1.32 6.82 -51.93 -0.35 0.96 16 35 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.04 1.02 3.40 -51.93 -0.18 0.84 16 39 H 0.03 0.54 6.88 -51.93 -0.36 0.18 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.07 1.65 7.63 -51.93 -0.40 1.26 16 42 H 0.03 0.57 8.13 -51.93 -0.42 0.15 16 43 H 0.15 1.43 8.06 -52.48 -0.42 1.00 16 44 H 0.15 1.30 8.06 -52.48 -0.42 0.88 16 45 H 0.20 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 353.34 15.07 5.32 5.32 Total: -1.00 -35.55 353.34 -7.36 -42.91 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.88 Total: 3.31 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.61 Total: -5.18 kcal Atomic # 7 Polarization: -51.63 SS G_CDS: 0.13 Total: -51.51 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.03 Total: -13.10 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.29 Total: 18.24 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.55 -7.36 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034400521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.719 kcal (2) G-P(sol) polarization free energy of solvation -35.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds