Wall clock time and date at job start Tue Mar 31 2020 09:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.70048 * 2 1 4 4 C 1.53162 * 109.58963 * 239.63953 * 2 1 3 5 5 C 1.53041 * 109.32649 * 185.57232 * 4 2 1 6 6 H 1.08997 * 109.46062 * 181.38433 * 5 4 2 7 7 N 1.46498 * 109.45945 * 301.35777 * 5 4 2 8 8 C 1.36937 * 119.99928 * 205.03042 * 7 5 4 9 9 H 1.07998 * 120.00403 * 359.97438 * 8 7 5 10 10 C 1.38816 * 119.99926 * 180.02562 * 8 7 5 11 11 N 1.31621 * 120.00155 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00219 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47250 * 89.99613 * 12 10 8 14 14 H 1.48508 * 109.46739 * 329.99582 * 12 10 8 15 15 H 1.48498 * 109.47154 * 209.99934 * 12 10 8 16 16 C 1.53044 * 109.52897 * 61.36972 * 5 4 2 17 17 C 1.53199 * 109.31162 * 298.64402 * 16 5 4 18 18 N 1.46922 * 108.77378 * 54.63282 * 17 16 5 19 19 C 1.34779 * 120.62993 * 126.36950 * 18 17 16 20 20 O 1.21283 * 120.00049 * 174.21054 * 19 18 17 21 21 C 1.50702 * 119.99827 * 354.21616 * 19 18 17 22 22 C 1.52997 * 109.46975 * 179.97438 * 21 19 18 23 23 C 1.50705 * 109.47048 * 179.97438 * 22 21 19 24 24 C 1.34513 * 125.78655 * 89.99995 * 23 22 21 25 25 C 1.41379 * 106.84234 * 180.02562 * 24 23 22 26 26 C 1.34516 * 106.83791 * 359.97438 * 25 24 23 27 27 O 1.34292 * 125.79233 * 269.69397 * 23 22 21 28 28 H 1.09001 * 109.47417 * 305.42920 * 1 2 3 29 29 H 1.09001 * 109.47077 * 65.43233 * 1 2 3 30 30 H 1.09007 * 109.46878 * 185.43116 * 1 2 3 31 31 H 1.08994 * 109.48336 * 65.62009 * 4 2 1 32 32 H 1.09004 * 109.50164 * 305.52816 * 4 2 1 33 33 H 0.97001 * 120.00172 * 25.02460 * 7 5 4 34 34 H 0.97009 * 119.99851 * 0.02562 * 11 10 8 35 35 H 1.09000 * 109.49920 * 58.59226 * 16 5 4 36 36 H 1.08995 * 109.49968 * 178.66199 * 16 5 4 37 37 H 1.09002 * 109.58477 * 174.42096 * 17 16 5 38 38 H 1.08994 * 109.58415 * 294.70319 * 17 16 5 39 39 H 1.09003 * 109.46759 * 299.99868 * 21 19 18 40 40 H 1.08993 * 109.47622 * 59.99539 * 21 19 18 41 41 H 1.08994 * 109.47384 * 299.99491 * 22 21 19 42 42 H 1.09001 * 109.47634 * 60.00148 * 22 21 19 43 43 H 1.08006 * 126.57866 * 0.03778 * 24 23 22 44 44 H 1.08001 * 126.58000 * 179.97438 * 25 24 23 45 45 H 1.07998 * 125.78597 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2451 5 6 3.5675 -0.8479 -1.1701 6 1 3.9377 -1.3449 -2.0668 7 7 4.1571 0.4898 -1.0749 8 6 5.4411 0.7040 -1.4997 9 1 6.0194 -0.1133 -1.9046 10 6 5.9999 1.9714 -1.4090 11 7 5.2954 2.9675 -0.9150 12 14 7.7518 2.2635 -1.9878 13 1 7.7421 2.6416 -3.4238 14 1 8.5459 1.0215 -1.8082 15 1 8.3600 3.3594 -1.1914 16 6 3.9570 -1.6657 0.0635 17 6 3.4650 -0.9469 1.3238 18 7 2.0226 -0.6995 1.1945 19 6 1.1673 -1.1070 2.1531 20 8 -0.0057 -0.8059 2.0872 21 6 1.6686 -1.9365 3.3071 22 6 0.5044 -2.2618 4.2450 23 6 1.0056 -3.0919 5.3987 24 6 1.4696 -2.6151 6.5677 25 6 1.8297 -3.7344 7.3527 26 6 1.5637 -4.8284 6.6165 27 8 1.0593 -4.4333 5.4362 28 1 -0.3634 0.5957 0.8374 29 1 -0.3633 0.4273 -0.9346 30 1 -0.3633 -1.0231 0.0973 31 1 1.7659 -0.1668 -2.1363 32 1 1.6031 -1.7253 -1.2910 33 1 3.6378 1.2239 -0.7110 34 1 4.3858 2.8158 -0.6141 35 1 3.4984 -2.6528 0.0053 36 1 5.0412 -1.7700 0.1035 37 1 3.6518 -1.5718 2.1972 38 1 3.9921 0.0008 1.4331 39 1 2.1002 -2.8630 2.9281 40 1 2.4292 -1.3781 3.8527 41 1 0.0733 -1.3353 4.6240 42 1 -0.2565 -2.8202 3.6997 43 1 1.5512 -1.5764 6.8522 44 1 2.2397 -3.7149 8.3516 45 1 1.7240 -5.8511 6.9244 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044463021.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:10:20 Heat of formation + Delta-G solvation = -1.951490 kcal Electronic energy + Delta-G solvation = -25677.450165 eV Core-core repulsion = 22083.246052 eV Total energy + Delta-G solvation = -3594.204114 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.73666 -40.39922 -37.66852 -34.51578 -34.36021 -33.08104 -32.35744 -32.04725 -29.14586 -28.64381 -26.96843 -24.94256 -23.87826 -23.42950 -21.93396 -21.75912 -20.51151 -19.91706 -18.45119 -17.59820 -17.27551 -16.56428 -16.22030 -15.96813 -15.52338 -14.99589 -14.68354 -14.18244 -14.08095 -13.74800 -13.58537 -13.38238 -13.06731 -13.00342 -12.85757 -12.75242 -12.35960 -12.15694 -12.05655 -11.90745 -11.59332 -11.29095 -11.20441 -10.84877 -10.71338 -10.58407 -10.35259 -10.20019 -10.10788 -10.02097 -9.20522 -8.99317 -8.93094 -8.60070 -8.24016 -7.08437 -6.13700 -3.14425 1.53360 2.42387 2.75636 2.78612 3.22248 3.49072 3.53273 3.67269 4.38530 4.63583 4.74386 4.78796 4.83371 4.86891 5.01790 5.15054 5.20956 5.31255 5.37325 5.43565 5.53700 5.57344 5.62628 5.63401 5.65785 5.77599 5.78719 5.82040 5.91990 5.97423 6.03099 6.08293 6.19805 6.31998 6.34452 6.40502 6.51484 6.64367 6.66614 6.73038 6.96257 6.98007 7.67442 7.77811 8.35049 8.71248 9.17784 10.04244 10.19456 11.34088 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.003259 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.251027 B = 8590.580260 C = 9460.015592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.146 3.854 3 H 0.074 0.926 4 C -0.135 4.135 5 C 0.179 3.821 6 H 0.051 0.949 7 N -0.733 5.733 8 C -0.331 4.331 9 H 0.064 0.936 10 C -0.044 4.044 11 N -0.943 5.943 12 Si 1.081 2.919 13 H -0.296 1.296 14 H -0.295 1.295 15 H -0.288 1.288 16 C -0.149 4.149 17 C 0.114 3.886 18 N -0.598 5.598 19 C 0.514 3.486 20 O -0.545 6.545 21 C -0.139 4.139 22 C -0.023 4.023 23 C -0.006 4.006 24 C -0.212 4.212 25 C -0.213 4.213 26 C -0.047 4.047 27 O -0.176 6.176 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.366 0.634 34 H 0.254 0.746 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.088 0.912 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.041 -13.939 11.986 20.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.043 3.957 3 H 0.092 0.908 4 C -0.174 4.174 5 C 0.069 3.931 6 H 0.069 0.931 7 N -0.377 5.377 8 C -0.462 4.462 9 H 0.082 0.918 10 C -0.242 4.242 11 N -0.589 5.589 12 Si 0.912 3.088 13 H -0.224 1.224 14 H -0.222 1.222 15 H -0.215 1.215 16 C -0.190 4.190 17 C -0.009 4.009 18 N -0.331 5.331 19 C 0.303 3.697 20 O -0.424 6.424 21 C -0.179 4.179 22 C -0.060 4.060 23 C -0.056 4.056 24 C -0.231 4.231 25 C -0.232 4.232 26 C -0.115 4.115 27 O -0.072 6.072 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.201 0.799 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.392 -12.967 11.425 18.797 hybrid contribution -0.886 -1.018 0.546 1.456 sum -8.278 -13.985 11.971 20.184 Atomic orbital electron populations 1.22190 0.93066 1.03079 1.00831 1.21219 0.94944 0.95724 0.83803 0.90814 1.22260 0.97408 1.00359 0.97336 1.20121 0.90244 0.87673 0.95067 0.93064 1.42521 1.14087 1.04794 1.76311 1.20058 0.90465 0.97029 1.38610 0.91751 1.25734 1.06074 0.91580 1.00817 1.70868 1.10987 1.32386 1.44615 0.83211 0.74477 0.75106 0.75973 1.22382 1.22187 1.21451 1.22498 1.01510 0.97951 0.97061 1.21726 0.79182 1.01650 0.98328 1.48192 1.07783 1.56910 1.20195 1.20421 0.86009 0.80060 0.83244 1.90722 1.17263 1.57464 1.76962 1.21730 0.99427 1.01198 0.95532 1.19852 0.97159 0.97997 0.91014 1.22526 1.04190 0.80595 0.98333 1.21643 1.06576 1.00425 0.94446 1.21847 1.07227 0.92277 1.01897 1.24015 1.02956 1.00190 0.84313 1.84027 1.64666 1.22807 1.35723 0.90538 0.94015 0.92109 0.90838 0.91963 0.79908 0.93455 0.93179 0.90756 0.90964 0.90035 0.88706 0.88579 0.88030 0.89332 0.83427 0.83538 0.78238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.08 7.61 37.16 0.28 -1.80 16 2 C 0.15 2.40 3.19 -67.61 -0.22 2.19 16 3 H 0.07 1.37 6.64 -51.93 -0.34 1.03 16 4 C -0.13 -2.21 5.07 -26.63 -0.13 -2.34 16 5 C 0.18 3.37 3.10 -67.89 -0.21 3.16 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.73 -17.12 4.31 -53.38 -0.23 -17.35 16 8 C -0.33 -8.82 9.93 -15.06 -0.15 -8.97 16 9 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 10 C -0.04 -1.24 5.50 -17.43 -0.10 -1.34 16 11 N -0.94 -28.36 13.70 55.49 0.76 -27.60 16 12 Si 1.08 25.32 29.92 -169.99 -5.09 20.23 16 13 H -0.30 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.30 -6.50 7.11 56.52 0.40 -6.10 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 16 C -0.15 -2.43 5.78 -26.61 -0.15 -2.59 16 17 C 0.11 1.75 6.09 -3.71 -0.02 1.72 16 18 N -0.60 -9.20 2.97 -165.24 -0.49 -9.69 16 19 C 0.51 7.45 7.50 -10.98 -0.08 7.37 16 20 O -0.54 -8.95 11.55 5.55 0.06 -8.89 16 21 C -0.14 -1.56 4.04 -27.88 -0.11 -1.67 16 22 C -0.02 -0.24 5.04 -27.88 -0.14 -0.38 16 23 C -0.01 -0.07 6.57 -35.62 -0.23 -0.30 16 24 C -0.21 -2.19 10.81 -39.70 -0.43 -2.62 16 25 C -0.21 -1.97 10.91 -39.70 -0.43 -2.41 16 26 C -0.05 -0.42 12.09 29.42 0.36 -0.06 16 27 O -0.18 -1.99 10.65 5.74 0.06 -1.93 16 28 H 0.08 1.27 6.54 -51.93 -0.34 0.93 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.96 6.96 -51.93 -0.36 0.60 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.37 8.93 4.89 -40.82 -0.20 8.73 16 34 H 0.25 7.54 6.78 -40.82 -0.28 7.26 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 0.91 5.93 -51.93 -0.31 0.60 16 38 H 0.08 1.50 7.74 -51.93 -0.40 1.09 16 39 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 40 H 0.10 1.00 7.71 -51.93 -0.40 0.60 16 41 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 42 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 43 H 0.15 1.33 8.06 -52.48 -0.42 0.90 16 44 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.20 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -31.37 355.74 -8.23 -39.60 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.89 Total: 10.31 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -1.78 Total: -10.05 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.04 Total: -54.64 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.13 Total: -10.81 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.23 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.37 -8.23 -39.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044463021.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.647 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds