Wall clock time and date at job start Tue Mar 31 2020 08:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42908 * 109.47291 * 2 1 4 4 C 1.42899 * 114.00015 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46856 * 179.97438 * 4 3 2 6 6 C 1.38285 * 119.92669 * 90.00367 * 5 4 3 7 7 C 1.38112 * 120.06764 * 180.02562 * 6 5 4 8 8 C 1.38864 * 119.93329 * 359.97438 * 7 6 5 9 9 N 1.39935 * 120.07082 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00363 * 35.09275 * 9 8 7 11 11 O 1.21583 * 119.99603 * 355.40718 * 10 9 8 12 12 N 1.34773 * 120.00141 * 175.41546 * 10 9 8 13 13 C 1.46495 * 120.00171 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99786 * 180.02562 * 12 10 9 15 15 H 1.09003 * 109.47412 * 359.97438 * 14 12 10 16 16 C 1.53002 * 109.46791 * 239.99139 * 14 12 10 17 17 C 1.50700 * 109.47372 * 119.99360 * 14 12 10 18 18 H 1.07995 * 120.00286 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00041 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00160 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 120.00123 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.46924 * 270.00236 * 21 19 17 23 23 H 1.48496 * 109.46763 * 30.00143 * 21 19 17 24 24 H 1.48497 * 109.46919 * 150.00330 * 21 19 17 25 25 C 1.38869 * 119.85594 * 0.25876 * 8 7 6 26 26 C 1.38109 * 119.92992 * 359.48543 * 25 8 7 27 27 H 1.08997 * 109.47670 * 300.00240 * 1 2 3 28 28 H 1.09009 * 109.46980 * 60.00355 * 1 2 3 29 29 H 1.09000 * 109.47435 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47670 * 239.99760 * 2 1 3 31 31 H 1.09009 * 109.46980 * 119.99645 * 2 1 3 32 32 H 1.08998 * 109.47168 * 59.99956 * 4 3 2 33 33 H 1.09005 * 109.47027 * 299.99907 * 4 3 2 34 34 H 1.07999 * 119.96323 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.03082 * 179.97438 * 7 6 5 36 36 H 0.97001 * 119.99868 * 215.09256 * 9 8 7 37 37 H 1.09004 * 109.47557 * 270.00689 * 13 12 10 38 38 H 1.09003 * 109.46981 * 30.00634 * 13 12 10 39 39 H 1.08996 * 109.47192 * 150.00619 * 13 12 10 40 40 H 1.08996 * 109.47564 * 299.99810 * 16 14 12 41 41 H 1.09003 * 109.46882 * 60.00668 * 16 14 12 42 42 H 1.09005 * 109.47089 * 179.97438 * 16 14 12 43 43 H 0.97002 * 120.00468 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.03553 * 179.72532 * 25 8 7 45 45 H 1.08004 * 119.96351 * 180.25643 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 6 3.9968 3.5834 1.1980 7 6 4.3524 4.9180 1.2008 8 6 4.5323 5.5897 -0.0012 9 7 4.8920 6.9420 -0.0018 10 6 5.7130 7.4214 0.9536 11 8 6.0740 6.6997 1.8630 12 7 6.1334 8.7008 0.9010 13 6 5.6987 9.5702 -0.1949 14 6 7.0262 9.2216 1.9392 15 1 7.2386 8.4354 2.6638 16 6 6.3526 10.3989 2.6473 17 6 8.3139 9.6851 1.3083 18 1 8.4533 9.6005 0.2408 19 6 9.3138 10.2180 2.0940 20 7 9.1440 10.3215 3.3940 21 14 10.9098 10.7931 1.3118 22 1 11.8779 9.6676 1.2775 23 1 10.6427 11.2588 -0.0727 24 1 11.4773 11.9100 2.1091 25 6 4.3486 4.9179 -1.2027 26 6 3.9982 3.5821 -1.1987 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8340 0.9764 -0.8891 33 1 3.8333 0.9767 0.8909 34 1 3.8564 3.0606 2.1326 35 1 4.4904 5.4387 2.1369 36 1 4.5506 7.5344 -0.6898 37 1 6.4060 9.4951 -1.0209 38 1 4.7100 9.2607 -0.5339 39 1 5.6564 10.6018 0.1546 40 1 6.1400 11.1852 1.9231 41 1 5.4212 10.0636 3.1038 42 1 7.0167 10.7862 3.4202 43 1 9.8475 10.6961 3.9468 44 1 4.4834 5.4387 -2.1392 45 1 3.8593 3.0580 -2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086301708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:16 Heat of formation + Delta-G solvation = -41.234771 kcal Electronic energy + Delta-G solvation = -24624.595561 eV Core-core repulsion = 21028.687997 eV Total energy + Delta-G solvation = -3595.907564 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29976 -38.92383 -37.76969 -35.59599 -34.48723 -32.87690 -31.85997 -30.78726 -30.15331 -28.95305 -26.32035 -25.42667 -25.16089 -23.02308 -22.84301 -21.99996 -20.68586 -19.16687 -17.90135 -16.98489 -16.82828 -16.36382 -16.16156 -15.93071 -15.16807 -15.08290 -14.54961 -14.18593 -14.07266 -13.42464 -13.34234 -13.21331 -13.19592 -12.90108 -12.72599 -12.62661 -12.27505 -11.73001 -11.66772 -11.56907 -11.52177 -11.15873 -11.07646 -11.02994 -10.84966 -10.71348 -10.25966 -10.17057 -9.98541 -9.80992 -9.32545 -9.16487 -8.73648 -8.43425 -7.95459 -7.53302 -6.07803 -4.15517 1.36797 1.58627 3.17206 3.27135 3.33757 3.36110 3.43269 3.80684 4.16190 4.35182 4.51977 4.74663 4.77892 4.86357 5.01219 5.08253 5.12785 5.21300 5.23226 5.24697 5.43190 5.51926 5.54706 5.61768 5.75988 5.82822 5.86768 5.97295 6.13458 6.21461 6.40104 6.49937 6.69531 6.73928 6.79341 6.80348 7.00130 7.00928 7.14576 7.29066 7.44883 7.68447 7.80906 8.04929 8.20118 8.61168 8.85293 9.18594 9.51305 10.97525 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.030502 B = 0.002470 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.749816 B =11331.184338 C =11371.189434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.384 6.384 4 C 0.110 3.890 5 C -0.124 4.124 6 C -0.078 4.078 7 C -0.124 4.124 8 C 0.188 3.812 9 N -0.696 5.696 10 C 0.696 3.304 11 O -0.578 6.578 12 N -0.604 5.604 13 C 0.087 3.913 14 C 0.272 3.728 15 H 0.065 0.935 16 C -0.148 4.148 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.900 3.100 22 H -0.280 1.280 23 H -0.275 1.275 24 H -0.286 1.286 25 C -0.159 4.159 26 C -0.079 4.079 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.122 0.878 35 H 0.145 0.855 36 H 0.402 0.598 37 H 0.050 0.950 38 H 0.045 0.955 39 H 0.078 0.922 40 H 0.030 0.970 41 H 0.012 0.988 42 H 0.095 0.905 43 H 0.263 0.737 44 H 0.123 0.877 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 -14.096 -9.369 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.034 3.966 5 C -0.125 4.125 6 C -0.097 4.097 7 C -0.145 4.145 8 C 0.092 3.908 9 N -0.346 5.346 10 C 0.398 3.602 11 O -0.456 6.456 12 N -0.338 5.338 13 C -0.057 4.057 14 C 0.172 3.828 15 H 0.083 0.917 16 C -0.206 4.206 17 C -0.564 4.564 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.526 5.526 21 Si 0.727 3.273 22 H -0.206 1.206 23 H -0.200 1.200 24 H -0.211 1.211 25 C -0.181 4.181 26 C -0.098 4.098 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.239 0.761 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.031 0.969 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -14.200 -14.250 -8.495 21.838 hybrid contribution 0.988 0.523 -0.887 1.428 sum -13.212 -13.727 -9.383 21.237 Atomic orbital electron populations 1.21739 0.93835 1.02057 1.03221 1.22453 0.95587 0.84169 0.99939 1.88002 1.20978 1.25980 1.95378 1.21236 0.81325 0.93512 1.00524 1.19413 1.04532 0.94871 0.93668 1.20912 0.97517 0.94011 0.97273 1.21415 0.99613 0.94848 0.98597 1.17640 0.95781 0.83583 0.93825 1.43005 1.50811 1.08316 1.32426 1.15985 0.78972 0.83056 0.82138 1.90861 1.61757 1.57201 1.35736 1.47615 1.49985 1.08092 1.28110 1.21507 0.96985 0.96653 0.90564 1.18911 0.85723 0.93166 0.85035 0.91672 1.22119 0.98340 0.98949 1.01224 1.21317 0.99411 1.41381 0.94258 0.92319 1.24893 0.98526 0.95590 0.94839 1.69876 1.33624 1.45155 1.03935 0.86479 0.83369 0.78319 0.79106 1.20621 1.19974 1.21127 1.20816 1.05991 0.94738 0.96506 1.20676 0.98380 0.93539 0.97223 0.91808 0.91876 0.91254 0.93553 0.93478 0.92772 0.92642 0.85992 0.83745 0.76058 0.93192 0.93690 0.90345 0.95106 0.96903 0.88659 0.92665 0.85856 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 10.28 37.15 0.38 -0.67 16 2 C 0.06 0.45 6.66 37.15 0.25 0.70 16 3 O -0.38 -4.38 10.33 -35.23 -0.36 -4.74 16 4 C 0.11 1.16 6.06 36.01 0.22 1.38 16 5 C -0.12 -1.59 5.51 -104.59 -0.58 -2.17 16 6 C -0.08 -1.12 9.69 -39.61 -0.38 -1.50 16 7 C -0.12 -2.08 8.70 -39.40 -0.34 -2.43 16 8 C 0.19 3.01 6.30 -83.69 -0.53 2.49 16 9 N -0.70 -11.47 5.22 -14.23 -0.07 -11.54 16 10 C 0.70 14.79 8.13 -86.92 -0.71 14.08 16 11 O -0.58 -14.41 13.10 5.29 0.07 -14.34 16 12 N -0.60 -12.87 2.75 -181.01 -0.50 -13.37 16 13 C 0.09 1.42 9.48 59.84 0.57 1.99 16 14 C 0.27 6.93 2.64 -69.08 -0.18 6.75 16 15 H 0.07 1.93 6.90 -51.93 -0.36 1.57 16 16 C -0.15 -3.50 8.95 37.16 0.33 -3.17 16 17 C -0.52 -14.16 8.37 -34.44 -0.29 -14.45 16 18 H 0.06 1.57 7.64 -52.49 -0.40 1.17 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.04 11.32 55.43 0.63 -24.42 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 25 C -0.16 -2.11 9.97 -39.40 -0.39 -2.50 16 26 C -0.08 -0.98 9.69 -39.61 -0.38 -1.36 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.45 8.14 -51.92 -0.42 0.03 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 32 H 0.05 0.48 8.08 -51.93 -0.42 0.06 16 33 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 34 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.14 2.74 6.22 -52.48 -0.33 2.42 16 36 H 0.40 5.28 6.52 -40.82 -0.27 5.01 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.04 0.56 6.30 -51.93 -0.33 0.23 16 39 H 0.08 1.29 6.43 -51.93 -0.33 0.96 16 40 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 43 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 45 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 LS Contribution 367.68 15.07 5.54 5.54 Total: -1.00 -32.08 367.68 -8.73 -40.80 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -6.88 Total: 5.22 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -2.13 Total: 0.78 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.06 Total: -49.32 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.29 Total: -19.08 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.08 -8.73 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086301708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.430 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds