Wall clock time and date at job start Tue Mar 31 2020 08:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42908 * 109.47291 * 2 1 4 4 C 1.42899 * 114.00015 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.46856 * 179.97438 * 4 3 2 6 6 C 1.38285 * 119.92669 * 90.00367 * 5 4 3 7 7 C 1.38112 * 120.06764 * 180.02562 * 6 5 4 8 8 C 1.38864 * 119.93329 * 359.97438 * 7 6 5 9 9 N 1.39935 * 120.07082 * 179.97438 * 8 7 6 10 10 C 1.34780 * 120.00363 * 35.09275 * 9 8 7 11 11 O 1.21583 * 119.99603 * 355.40718 * 10 9 8 12 12 N 1.34773 * 120.00141 * 175.41546 * 10 9 8 13 13 C 1.46495 * 120.00171 * 359.97438 * 12 10 9 14 14 C 1.46497 * 119.99786 * 180.02562 * 12 10 9 15 15 H 1.09003 * 109.47412 * 359.97438 * 14 12 10 16 16 C 1.53002 * 109.46791 * 239.99139 * 14 12 10 17 17 C 1.50700 * 109.47372 * 119.99360 * 14 12 10 18 18 H 1.07995 * 120.00286 * 0.02562 * 17 14 12 19 19 C 1.37877 * 120.00041 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00160 * 0.02562 * 19 17 14 21 21 Si 1.86805 * 120.00123 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.46924 * 270.00236 * 21 19 17 23 23 H 1.48496 * 109.46763 * 30.00143 * 21 19 17 24 24 H 1.48497 * 109.46919 * 150.00330 * 21 19 17 25 25 C 1.38869 * 119.85594 * 0.25876 * 8 7 6 26 26 C 1.38109 * 119.92992 * 359.48543 * 25 8 7 27 27 H 1.08997 * 109.47670 * 300.00240 * 1 2 3 28 28 H 1.09009 * 109.46980 * 60.00355 * 1 2 3 29 29 H 1.09000 * 109.47435 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47670 * 239.99760 * 2 1 3 31 31 H 1.09009 * 109.46980 * 119.99645 * 2 1 3 32 32 H 1.08998 * 109.47168 * 59.99956 * 4 3 2 33 33 H 1.09005 * 109.47027 * 299.99907 * 4 3 2 34 34 H 1.07999 * 119.96323 * 359.97438 * 6 5 4 35 35 H 1.08004 * 120.03082 * 179.97438 * 7 6 5 36 36 H 0.97001 * 119.99868 * 215.09256 * 9 8 7 37 37 H 1.09004 * 109.47557 * 270.00689 * 13 12 10 38 38 H 1.09003 * 109.46981 * 30.00634 * 13 12 10 39 39 H 1.08996 * 109.47192 * 150.00619 * 13 12 10 40 40 H 1.08996 * 109.47564 * 299.99810 * 16 14 12 41 41 H 1.09003 * 109.46882 * 60.00668 * 16 14 12 42 42 H 1.09005 * 109.47089 * 179.97438 * 16 14 12 43 43 H 0.97002 * 120.00468 * 179.97438 * 20 19 17 44 44 H 1.08000 * 120.03553 * 179.72532 * 25 8 7 45 45 H 1.08004 * 119.96351 * 180.25643 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8194 2.9162 -0.0001 6 6 3.9968 3.5834 1.1980 7 6 4.3524 4.9180 1.2008 8 6 4.5323 5.5897 -0.0012 9 7 4.8920 6.9420 -0.0018 10 6 5.7130 7.4214 0.9536 11 8 6.0740 6.6997 1.8630 12 7 6.1334 8.7008 0.9010 13 6 5.6987 9.5702 -0.1949 14 6 7.0262 9.2216 1.9392 15 1 7.2386 8.4354 2.6638 16 6 6.3526 10.3989 2.6473 17 6 8.3139 9.6851 1.3083 18 1 8.4533 9.6005 0.2408 19 6 9.3138 10.2180 2.0940 20 7 9.1440 10.3215 3.3940 21 14 10.9098 10.7931 1.3118 22 1 11.8779 9.6676 1.2775 23 1 10.6427 11.2588 -0.0727 24 1 11.4773 11.9100 2.1091 25 6 4.3486 4.9179 -1.2027 26 6 3.9982 3.5821 -1.1987 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8340 0.9764 -0.8891 33 1 3.8333 0.9767 0.8909 34 1 3.8564 3.0606 2.1326 35 1 4.4904 5.4387 2.1369 36 1 4.5506 7.5344 -0.6898 37 1 6.4060 9.4951 -1.0209 38 1 4.7100 9.2607 -0.5339 39 1 5.6564 10.6018 0.1546 40 1 6.1400 11.1852 1.9231 41 1 5.4212 10.0636 3.1038 42 1 7.0167 10.7862 3.4202 43 1 9.8475 10.6961 3.9468 44 1 4.4834 5.4387 -2.1392 45 1 3.8593 3.0580 -2.1328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086301708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:31:15 Heat of formation + Delta-G solvation = -60.687503 kcal Electronic energy + Delta-G solvation = -24625.439095 eV Core-core repulsion = 21028.687997 eV Total energy + Delta-G solvation = -3596.751098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.72672 -40.09439 -38.69281 -37.28195 -35.95086 -34.73196 -32.74284 -31.87773 -31.49827 -30.40191 -27.75040 -27.29437 -26.43375 -24.04759 -23.61307 -23.44012 -22.03892 -20.76644 -19.35632 -18.58160 -18.03918 -17.59445 -17.13813 -17.04457 -16.83393 -16.44232 -16.08992 -15.58657 -15.10059 -15.00869 -14.49029 -14.39563 -14.27387 -14.18784 -13.89328 -13.73552 -13.49151 -13.21668 -13.09789 -12.93407 -12.73073 -12.63312 -12.45001 -12.32359 -12.18002 -12.10564 -12.02933 -11.99388 -11.32484 -11.17685 -10.94161 -10.52570 -10.51656 -9.84511 -9.48859 -8.94600 -8.14270 -6.30612 0.25500 0.49221 1.41487 1.42793 1.52547 1.71677 2.12942 2.41729 2.65820 3.05521 3.13681 3.17993 3.90088 3.95194 4.10809 4.20546 4.28780 4.30797 4.37843 4.44089 4.54280 4.55550 4.59561 4.64894 4.75819 4.77643 4.88665 4.90505 4.99053 5.04489 5.07117 5.09437 5.28737 5.30749 5.32398 5.45836 5.56895 5.59338 5.64966 5.68655 5.97790 6.10313 6.14478 6.24305 6.31408 6.76592 7.06180 7.36287 7.60792 8.90044 Molecular weight = 306.17amu Principal moments of inertia in cm(-1) A = 0.030502 B = 0.002470 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.749816 B =11331.184338 C =11371.189434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.408 6.408 4 C 0.110 3.890 5 C -0.121 4.121 6 C -0.088 4.088 7 C -0.150 4.150 8 C 0.159 3.841 9 N -0.676 5.676 10 C 0.691 3.309 11 O -0.626 6.626 12 N -0.611 5.611 13 C 0.082 3.918 14 C 0.277 3.723 15 H 0.010 0.990 16 C -0.133 4.133 17 C -0.536 4.536 18 H 0.060 0.940 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 0.966 3.034 22 H -0.284 1.284 23 H -0.261 1.261 24 H -0.280 1.280 25 C -0.148 4.148 26 C -0.076 4.076 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.062 0.938 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.420 0.580 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.078 0.922 40 H 0.050 0.950 41 H 0.019 0.981 42 H 0.069 0.931 43 H 0.265 0.735 44 H 0.154 0.846 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.282 -15.010 -12.648 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.328 6.328 4 C 0.034 3.966 5 C -0.122 4.122 6 C -0.107 4.107 7 C -0.171 4.171 8 C 0.063 3.937 9 N -0.327 5.327 10 C 0.393 3.607 11 O -0.507 6.507 12 N -0.345 5.345 13 C -0.060 4.060 14 C 0.175 3.825 15 H 0.028 0.972 16 C -0.192 4.192 17 C -0.575 4.575 18 H 0.078 0.922 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.791 3.209 22 H -0.210 1.210 23 H -0.185 1.185 24 H -0.205 1.205 25 C -0.169 4.169 26 C -0.094 4.094 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.127 0.873 36 H 0.260 0.740 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.172 0.828 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -15.012 -15.164 -11.837 24.401 hybrid contribution 1.129 0.659 0.128 1.314 sum -13.883 -14.505 -11.709 23.243 Atomic orbital electron populations 1.21770 0.93247 1.03277 1.02496 1.22676 0.96125 0.82903 1.01091 1.87960 1.21178 1.28062 1.95617 1.21277 0.81374 0.91844 1.02065 1.19779 1.02984 0.96242 0.93225 1.21043 0.97714 0.93209 0.98734 1.21274 1.01847 0.96125 0.97864 1.17891 0.97672 0.83403 0.94720 1.42629 1.49606 1.08996 1.31463 1.16176 0.79366 0.82749 0.82455 1.90833 1.63559 1.58461 1.37875 1.47473 1.49585 1.08874 1.28608 1.21776 0.99363 0.95826 0.89037 1.18485 0.86819 0.91863 0.85333 0.97223 1.21900 0.97751 0.98715 1.00796 1.21560 1.00279 1.41305 0.94342 0.92158 1.25748 1.01848 0.95740 0.95295 1.70022 1.34625 1.45735 1.05223 0.85439 0.78968 0.77656 0.78832 1.20990 1.18524 1.20518 1.21123 1.04271 0.95144 0.96315 1.21122 0.96740 0.93224 0.98351 0.92829 0.92288 0.89089 0.91955 0.92709 0.90439 0.91937 0.85257 0.87317 0.74014 0.92403 0.89447 0.90374 0.93105 0.96195 0.91203 0.92626 0.82838 0.82592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.67 6.66 71.98 0.48 1.15 16 3 O -0.41 -8.43 10.33 -148.98 -1.54 -9.96 16 4 C 0.11 2.04 6.06 71.24 0.43 2.47 16 5 C -0.12 -2.91 5.51 -19.84 -0.11 -3.02 16 6 C -0.09 -2.56 9.69 22.25 0.22 -2.34 16 7 C -0.15 -5.29 8.70 22.39 0.19 -5.09 16 8 C 0.16 5.03 6.30 38.15 0.24 5.27 16 9 N -0.68 -21.97 5.22 -317.19 -1.65 -23.62 16 10 C 0.69 30.20 8.13 179.05 1.45 31.65 16 11 O -0.63 -33.35 13.10 -3.98 -0.05 -33.40 16 12 N -0.61 -26.37 2.75 -844.86 -2.33 -28.70 16 13 C 0.08 2.54 9.48 127.77 1.21 3.75 16 14 C 0.28 14.64 2.64 44.25 0.12 14.76 16 15 H 0.01 0.62 6.90 -2.39 -0.02 0.60 16 16 C -0.13 -6.45 8.95 71.98 0.64 -5.81 16 17 C -0.54 -29.36 8.37 25.60 0.21 -29.14 16 18 H 0.06 3.20 7.64 -2.91 -0.02 3.18 16 19 C 0.01 0.73 5.30 84.65 0.45 1.18 16 20 N -0.92 -53.21 11.32 21.45 0.24 -52.97 16 21 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 22 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 25 C -0.15 -3.52 9.97 22.39 0.22 -3.30 16 26 C -0.08 -1.62 9.69 22.25 0.22 -1.41 16 27 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 33 H 0.06 1.06 8.09 -2.38 -0.02 1.04 16 34 H 0.13 3.37 8.06 -2.91 -0.02 3.34 16 35 H 0.11 4.56 6.22 -2.91 -0.02 4.54 16 36 H 0.42 10.12 6.52 -92.71 -0.60 9.52 16 37 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.09 1.92 6.30 -2.39 -0.02 1.91 16 39 H 0.08 2.43 6.43 -2.39 -0.02 2.41 16 40 H 0.05 2.20 6.66 -2.39 -0.02 2.19 16 41 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 3.76 6.07 -2.38 -0.01 3.75 16 43 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 44 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 45 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -73.84 367.68 3.80 -70.03 By element: Atomic # 1 Polarization: 23.84 SS G_CDS: 0.38 Total: 24.23 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 6.72 Total: 9.05 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -3.74 Total: -105.29 kcal Atomic # 8 Polarization: -41.77 SS G_CDS: -1.59 Total: -43.36 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -73.84 3.80 -70.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086301708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.344 kcal (2) G-P(sol) polarization free energy of solvation -73.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds