Wall clock time and date at job start Tue Mar 31 2020 09:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86803 * 119.99798 * 2 1 4 4 H 1.48502 * 109.47166 * 270.00043 * 3 2 1 5 5 H 1.48504 * 109.47007 * 30.00062 * 3 2 1 6 6 H 1.48496 * 109.47129 * 149.99768 * 3 2 1 7 7 C 1.37870 * 119.99845 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99373 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00554 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47507 * 180.02562 * 9 7 2 11 11 C 1.46947 * 111.00280 * 170.00077 * 10 9 7 12 12 C 1.53052 * 109.36865 * 183.18533 * 11 10 9 13 13 N 1.46958 * 109.36357 * 301.59908 * 12 11 10 14 14 C 1.46896 * 111.00223 * 183.18664 * 13 12 11 15 15 C 1.50692 * 109.47273 * 169.99818 * 14 13 12 16 16 N 1.29947 * 126.28980 * 269.99820 * 15 14 13 17 17 O 1.21293 * 110.25357 * 180.02562 * 16 15 14 18 18 C 1.33644 * 109.81329 * 359.97438 * 17 16 15 19 19 C 1.50699 * 126.54947 * 179.97438 * 18 17 16 20 20 C 1.53777 * 113.61617 * 37.52743 * 19 18 17 21 21 C 1.53786 * 87.08096 * 220.01539 * 20 19 18 22 22 C 1.53781 * 113.61558 * 300.02631 * 19 18 17 23 23 N 1.31131 * 106.89535 * 0.02562 * 18 17 16 24 24 C 1.46962 * 110.88163 * 59.31469 * 13 12 11 25 25 C 1.46957 * 110.99351 * 293.79841 * 10 9 7 26 26 H 0.96996 * 120.00175 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47543 * 59.99695 * 9 7 2 28 28 H 1.09003 * 109.46834 * 299.99764 * 9 7 2 29 29 H 1.08998 * 109.49625 * 63.21631 * 11 10 9 30 30 H 1.09001 * 109.48769 * 303.14777 * 11 10 9 31 31 H 1.09001 * 109.49306 * 181.62658 * 12 11 10 32 32 H 1.09003 * 109.48689 * 61.55997 * 12 11 10 33 33 H 1.09000 * 109.47384 * 49.99124 * 14 13 12 34 34 H 1.09009 * 109.46859 * 290.00051 * 14 13 12 35 35 H 1.09002 * 112.84887 * 168.82985 * 19 18 17 36 36 H 1.09000 * 113.61768 * 334.56336 * 20 19 18 37 37 H 1.09000 * 113.61442 * 105.46857 * 20 19 18 38 38 H 1.09001 * 113.61412 * 270.88294 * 21 20 19 39 39 H 1.09000 * 113.61155 * 139.97741 * 21 20 19 40 40 H 1.08999 * 113.61404 * 254.52707 * 22 19 18 41 41 H 1.08989 * 113.61257 * 25.43560 * 22 19 18 42 42 H 1.09000 * 109.48433 * 60.64758 * 24 13 12 43 43 H 1.09001 * 109.48768 * 180.71296 * 24 13 12 44 44 H 1.09003 * 109.48717 * 296.77536 * 25 10 9 45 45 H 1.08999 * 109.49610 * 56.82182 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 1.5210 -4.8938 0.2400 12 6 2.5564 -6.0186 0.3129 13 7 3.3204 -6.0596 -0.9418 14 6 4.2750 -7.1761 -0.9407 15 6 4.8599 -7.3383 -2.3200 16 7 4.3856 -8.0822 -3.2740 17 8 5.0856 -7.9965 -4.2608 18 6 6.1038 -7.1641 -4.0230 19 6 7.1982 -6.7864 -4.9877 20 6 6.7138 -6.6316 -6.4390 21 6 8.0184 -7.3254 -6.8654 22 6 8.0297 -7.9843 -5.4759 23 7 5.9691 -6.7398 -2.7896 24 6 4.0052 -4.7814 -1.1802 25 6 2.9697 -3.6566 -1.2530 26 1 -0.4850 0.8400 0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 0.8260 -5.0918 -0.5760 30 1 0.9728 -4.8428 1.1808 31 1 2.0484 -6.9716 0.4608 32 1 3.2350 -5.8347 1.1459 33 1 3.7609 -8.0935 -0.6539 34 1 5.0744 -6.9699 -0.2289 35 1 7.8022 -5.9499 -4.6361 36 1 5.8178 -7.2100 -6.6643 37 1 6.6433 -5.5947 -6.7675 38 1 8.8466 -6.6358 -7.0284 39 1 7.8888 -8.0340 -7.6835 40 1 9.0214 -8.0394 -5.0270 41 1 7.4934 -8.9324 -5.4379 42 1 4.7002 -4.5835 -0.3641 43 1 4.5535 -4.8324 -2.1209 44 1 2.2911 -3.8405 -2.0860 45 1 3.4774 -2.7035 -1.4011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599336708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:46 Heat of formation + Delta-G solvation = 104.152919 kcal Electronic energy + Delta-G solvation = -25124.956446 eV Core-core repulsion = 21567.646116 eV Total energy + Delta-G solvation = -3557.310330 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.67106 -39.23733 -38.85539 -36.27073 -34.82472 -32.77419 -32.20656 -30.44949 -29.01212 -27.01765 -26.59347 -26.15201 -24.39749 -23.34155 -23.16615 -21.77431 -21.27997 -19.68050 -19.17916 -18.19068 -17.67550 -16.53688 -16.30797 -15.87779 -15.61733 -14.93691 -14.63443 -14.53681 -14.19906 -13.75678 -13.62975 -13.34097 -13.15446 -12.95091 -12.87218 -12.50472 -12.18244 -12.02087 -11.81493 -11.57669 -11.47785 -11.19061 -11.09638 -11.00902 -10.97466 -10.83822 -10.73641 -10.65697 -10.40469 -10.31409 -9.93573 -9.70030 -9.16774 -8.43408 -8.26023 -7.22826 -6.01487 -4.02929 1.04700 2.09701 2.64725 3.32461 3.38469 3.43052 3.44855 3.87990 4.04732 4.09614 4.15629 4.32963 4.42807 4.43408 4.89829 4.95877 5.11401 5.15210 5.23913 5.25198 5.28487 5.34029 5.42524 5.44751 5.49027 5.54208 5.54955 5.66226 5.74810 5.80637 5.87030 5.92005 5.95960 6.07977 6.18924 6.42197 6.58087 6.69325 7.07706 7.12297 7.34163 7.37813 7.81042 8.09600 8.12301 8.21285 8.56136 9.04566 9.61243 11.09461 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.016397 B = 0.003028 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.212506 B = 9244.134061 C =10514.657011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.057 3.943 12 C 0.064 3.936 13 N -0.536 5.536 14 C 0.144 3.856 15 C 0.185 3.815 16 N -0.371 5.371 17 O 0.077 5.923 18 C 0.184 3.816 19 C -0.023 4.023 20 C -0.133 4.133 21 C -0.138 4.138 22 C -0.129 4.129 23 N -0.475 5.475 24 C 0.059 3.941 25 C 0.069 3.931 26 H 0.261 0.739 27 H -0.009 1.009 28 H 0.030 0.970 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.044 0.956 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.380 -17.892 -10.602 25.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.072 4.072 12 C -0.064 4.064 13 N -0.262 5.262 14 C 0.014 3.986 15 C -0.089 4.089 16 N -0.078 5.078 17 O 0.018 5.982 18 C -0.036 4.036 19 C -0.044 4.044 20 C -0.171 4.171 21 C -0.176 4.176 22 C -0.167 4.167 23 N -0.209 5.209 24 C -0.069 4.069 25 C -0.059 4.059 26 H 0.071 0.929 27 H 0.009 0.991 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.085 0.915 35 H 0.152 0.848 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.108 0.892 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.573 -18.015 -10.095 25.275 hybrid contribution 0.338 1.014 -0.060 1.071 sum 14.911 -17.001 -10.156 24.789 Atomic orbital electron populations 1.69963 1.06065 1.26761 1.51058 1.24994 0.94865 0.99314 0.95464 0.86503 0.79821 0.83109 0.78032 1.20737 1.21248 1.19758 1.21154 0.93456 0.89956 1.49994 0.91923 1.19703 0.90032 0.87274 0.96131 1.62299 1.28098 1.02771 1.33182 1.22060 0.94638 0.89868 1.00671 1.22182 0.96056 0.99015 0.89154 1.62133 1.25027 1.03142 1.35946 1.20245 0.95009 0.96924 0.86380 1.25648 0.90535 0.93499 0.99168 1.74642 1.15275 1.22584 0.95267 1.85256 1.29383 1.50686 1.32894 1.28588 0.92109 0.90018 0.92913 1.21395 0.91082 1.01133 0.90749 1.23051 0.98897 1.02742 0.92385 1.22817 0.97810 0.99984 0.96945 1.23027 1.00350 0.96818 0.96509 1.71921 1.17243 1.24090 1.07619 1.22301 0.96003 0.87982 1.00583 1.21978 0.95342 0.97376 0.91248 0.92931 0.99089 0.95148 0.95078 0.90678 0.90844 0.93762 0.88315 0.91542 0.84789 0.88899 0.89895 0.89353 0.90404 0.90074 0.89249 0.93815 0.91173 0.95544 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.09 13.29 55.43 0.74 -26.35 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.47 8.47 -34.45 -0.29 -14.76 16 8 H 0.06 1.77 7.13 -52.48 -0.37 1.40 16 9 C 0.19 5.18 4.72 -4.98 -0.02 5.16 16 10 N -0.54 -12.08 4.70 -235.91 -1.11 -13.19 16 11 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 12 C 0.06 0.98 5.61 -3.77 -0.02 0.96 16 13 N -0.54 -8.64 4.70 -235.90 -1.11 -9.74 16 14 C 0.14 1.95 5.59 -4.98 -0.03 1.92 16 15 C 0.18 2.69 6.83 -156.37 -1.07 1.62 16 16 N -0.37 -5.47 12.16 30.90 0.38 -5.09 16 17 O 0.08 0.98 11.05 18.10 0.20 1.18 16 18 C 0.18 2.09 7.52 -13.06 -0.10 1.99 16 19 C -0.02 -0.17 4.29 -90.96 -0.39 -0.56 16 20 C -0.13 -0.78 7.63 -25.92 -0.20 -0.98 16 21 C -0.14 -0.59 8.08 -25.91 -0.21 -0.80 16 22 C -0.13 -0.68 7.63 -25.92 -0.20 -0.87 16 23 N -0.48 -6.59 10.77 -9.87 -0.11 -6.70 16 24 C 0.06 1.04 5.44 -3.76 -0.02 1.02 16 25 C 0.07 1.45 5.43 -3.76 -0.02 1.43 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 28 H 0.03 0.86 8.03 -51.93 -0.42 0.44 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.35 8.07 -51.93 -0.42 0.94 16 31 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.10 1.16 8.03 -51.93 -0.42 0.75 16 34 H 0.07 0.84 8.12 -51.92 -0.42 0.42 16 35 H 0.13 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.59 7.88 -51.93 -0.41 0.18 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.50 8.09 -51.94 -0.42 0.08 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.22 6.59 -51.93 -0.34 0.88 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.09 1.93 6.79 -51.93 -0.35 1.58 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -32.60 362.32 -10.61 -43.21 By element: Atomic # 1 Polarization: 3.09 SS G_CDS: -7.35 Total: -4.26 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -2.68 Total: -1.35 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -1.21 Total: -61.08 kcal Atomic # 8 Polarization: 0.98 SS G_CDS: 0.20 Total: 1.18 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.60 -10.61 -43.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599336708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.360 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds