Wall clock time and date at job start Tue Mar 31 2020 09:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99929 * 2 1 4 4 H 1.48497 * 109.46870 * 270.00022 * 3 2 1 5 5 H 1.48498 * 109.47146 * 30.00235 * 3 2 1 6 6 H 1.48497 * 109.47113 * 150.00073 * 3 2 1 7 7 C 1.38806 * 119.99876 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00546 * 179.97438 * 7 2 1 9 9 N 1.36946 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.46503 * 119.99589 * 174.70754 * 9 7 2 11 11 C 1.53002 * 110.81958 * 300.64164 * 10 9 7 12 12 N 1.46495 * 109.47001 * 300.98296 * 11 10 9 13 13 C 1.34785 * 119.99638 * 184.55116 * 12 11 10 14 14 O 1.21273 * 119.99619 * 359.97438 * 13 12 11 15 15 C 1.50701 * 119.99668 * 179.97438 * 13 12 11 16 16 C 1.53005 * 109.46632 * 179.97438 * 15 13 12 17 17 N 1.46501 * 109.46586 * 179.97438 * 16 15 13 18 18 C 1.34949 * 126.03401 * 125.00446 * 17 16 15 19 19 C 1.35317 * 107.74609 * 179.97438 * 18 17 16 20 20 C 1.39869 * 107.91800 * 0.02562 * 19 18 17 21 21 N 1.30840 * 108.20498 * 359.73909 * 20 19 18 22 22 C 1.54895 * 110.75052 * 177.30867 * 10 9 7 23 23 C 1.54262 * 104.19743 * 279.62563 * 22 10 9 24 24 C 1.53870 * 106.59815 * 336.39653 * 23 22 10 25 25 C 1.54262 * 106.60037 * 359.97438 * 24 23 22 26 26 H 0.97008 * 120.00408 * 359.97438 * 1 2 3 27 27 H 0.96994 * 120.00039 * 354.70792 * 9 7 2 28 28 H 1.09000 * 109.46455 * 60.97787 * 11 10 9 29 29 H 1.08991 * 109.47162 * 180.97727 * 11 10 9 30 30 H 0.96996 * 120.00636 * 4.54433 * 12 11 10 31 31 H 1.08996 * 109.47389 * 300.00040 * 15 13 12 32 32 H 1.08996 * 109.46898 * 60.00038 * 15 13 12 33 33 H 1.08994 * 109.47407 * 299.99848 * 16 15 13 34 34 H 1.08998 * 109.46559 * 60.00571 * 16 15 13 35 35 H 1.07996 * 126.12927 * 359.97438 * 18 17 16 36 36 H 1.07996 * 126.03830 * 179.97438 * 19 18 17 37 37 H 1.08008 * 125.89482 * 179.97438 * 20 19 18 38 38 H 1.09002 * 110.48242 * 160.94825 * 22 10 9 39 39 H 1.08997 * 110.48693 * 38.30809 * 22 10 9 40 40 H 1.09005 * 110.03250 * 95.67292 * 23 22 10 41 41 H 1.08993 * 110.03737 * 217.10578 * 23 22 10 42 42 H 1.09003 * 110.03693 * 119.28568 * 24 23 22 43 43 H 1.09002 * 110.02959 * 240.71015 * 24 23 22 44 44 H 1.09000 * 110.48825 * 142.29564 * 25 24 23 45 45 H 1.09004 * 110.48708 * 264.93028 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3254 -2.3881 0.0016 10 6 2.0533 -3.6542 -0.1149 11 6 2.8546 -3.7030 -1.4174 12 7 1.9451 -3.5529 -2.5560 13 6 2.4175 -3.6572 -3.8141 14 8 3.5955 -3.8750 -4.0033 15 6 1.4819 -3.5034 -4.9854 16 6 2.2663 -3.6647 -6.2891 17 7 1.3566 -3.5158 -7.4278 18 6 1.5013 -2.6482 -8.4513 19 6 0.4557 -2.8241 -9.2920 20 6 -0.3560 -3.8334 -8.7640 21 7 0.1859 -4.2524 -7.6492 22 6 1.0811 -4.8565 -0.0231 23 6 0.8294 -5.0249 1.4895 24 6 2.0363 -4.3972 2.2085 25 6 2.9796 -3.8699 1.1078 26 1 -0.4851 0.8401 0.0004 27 1 0.3586 -2.3898 0.0794 28 1 3.5839 -2.8930 -1.4257 29 1 3.3726 -4.6592 -1.4897 30 1 1.0031 -3.3785 -2.4047 31 1 0.7045 -4.2654 -4.9320 32 1 1.0241 -2.5147 -4.9572 33 1 3.0435 -2.9024 -6.3423 34 1 2.7244 -4.6533 -6.3175 35 1 2.3072 -1.9402 -8.5768 36 1 0.2788 -2.2806 -10.2084 37 1 -1.2700 -4.2054 -9.2029 38 1 1.5438 -5.7534 -0.4350 39 1 0.1491 -4.6340 -0.5425 40 1 -0.0862 -4.5072 1.7756 41 1 0.7543 -6.0830 1.7401 42 1 1.7064 -3.5750 2.8436 43 1 2.5470 -5.1508 2.8081 44 1 3.4331 -2.9270 1.4135 45 1 3.7488 -4.6075 0.8789 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753660939.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:01 Heat of formation + Delta-G solvation = 39.460460 kcal Electronic energy + Delta-G solvation = -25241.991911 eV Core-core repulsion = 21681.876305 eV Total energy + Delta-G solvation = -3560.115606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.17829 -39.52717 -38.19620 -34.39331 -34.03069 -33.29982 -30.85686 -30.39074 -29.60580 -28.26797 -27.93986 -25.15802 -23.81095 -23.21488 -21.17342 -20.75878 -20.16578 -19.55498 -18.72238 -17.55387 -17.08473 -16.40593 -15.90371 -15.63288 -15.28975 -14.70749 -14.58450 -14.32626 -14.15879 -13.74253 -13.66642 -13.33456 -13.02812 -12.80429 -12.77057 -12.50146 -12.26368 -11.92164 -11.39445 -11.37195 -11.14465 -10.90492 -10.78953 -10.69099 -10.65193 -10.54041 -10.38177 -9.93701 -9.83891 -9.69882 -9.65195 -9.47177 -8.96278 -8.67136 -8.51165 -7.06693 -5.85572 -3.14850 1.83657 2.40898 2.78421 2.93985 3.37638 3.44558 3.44791 3.64267 4.46957 4.51841 4.74566 4.78866 4.94726 5.08761 5.10468 5.19791 5.21138 5.34560 5.42270 5.50795 5.61548 5.62980 5.73608 5.79964 5.80396 5.87980 5.92929 5.99445 6.12662 6.18235 6.26173 6.32969 6.43391 6.52942 6.57621 6.63340 6.75891 6.77888 6.92616 6.94468 7.03219 7.63943 7.65312 7.95367 8.32808 8.57165 9.44884 9.98811 10.34551 11.36394 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.012156 B = 0.003743 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.849404 B = 7479.413439 C = 8812.249243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.902 3.098 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.707 5.707 10 C 0.188 3.812 11 C 0.120 3.880 12 N -0.697 5.697 13 C 0.515 3.485 14 O -0.561 6.561 15 C -0.153 4.153 16 C 0.151 3.849 17 N -0.370 5.370 18 C 0.056 3.944 19 C -0.280 4.280 20 C 0.041 3.959 21 N -0.296 5.296 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.111 4.111 25 C -0.131 4.131 26 H 0.255 0.745 27 H 0.385 0.615 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.405 0.595 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.173 0.827 36 H 0.145 0.855 37 H 0.181 0.819 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.926 -9.045 -10.374 13.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.733 3.267 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.365 4.365 8 H 0.087 0.913 9 N -0.348 5.348 10 C 0.095 3.905 11 C -0.006 4.006 12 N -0.346 5.346 13 C 0.300 3.700 14 O -0.442 6.442 15 C -0.194 4.194 16 C 0.030 3.970 17 N -0.152 5.152 18 C -0.091 4.091 19 C -0.310 4.310 20 C -0.145 4.145 21 N -0.118 5.118 22 C -0.161 4.161 23 C -0.154 4.154 24 C -0.149 4.149 25 C -0.171 4.171 26 H 0.065 0.935 27 H 0.220 0.780 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.240 0.760 31 H 0.122 0.878 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.111 0.889 35 H 0.190 0.810 36 H 0.163 0.837 37 H 0.198 0.802 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.863 -9.864 -9.363 13.727 hybrid contribution -0.260 1.862 -0.557 1.961 sum 1.603 -8.002 -9.920 12.846 Atomic orbital electron populations 1.69648 1.05015 1.25672 1.57532 1.24681 0.95404 0.97493 1.02821 0.86278 0.78796 0.84151 0.77496 1.21843 1.21843 1.20761 1.19082 0.90983 0.83776 1.42646 0.91260 1.42309 1.06027 0.99248 1.87252 1.20746 0.91427 0.87242 0.91063 1.21796 0.92717 1.00237 0.85823 1.45755 1.13341 1.70505 1.04997 1.20180 0.88512 0.76946 0.84359 1.90668 1.17241 1.50467 1.85785 1.21851 0.99505 1.05711 0.92313 1.21447 0.89190 1.04926 0.81428 1.48844 1.19465 1.28149 1.18723 1.22626 1.00871 0.95978 0.89590 1.21498 0.98456 1.06378 1.04652 1.23879 1.00277 0.96817 0.93538 1.77336 0.97027 1.18444 1.18987 1.22559 0.99471 0.97696 0.96380 1.22024 0.98893 0.99292 0.95238 1.21937 0.95852 0.99233 0.97846 1.22751 0.97437 1.00607 0.96319 0.93533 0.78039 0.91616 0.92617 0.75973 0.87753 0.88263 0.87744 0.88910 0.80981 0.83698 0.80203 0.91768 0.91822 0.91970 0.92971 0.91804 0.93276 0.90849 0.92949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.31 13.06 55.49 0.72 -25.59 16 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.71 29.55 -169.99 -5.02 16.69 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.23 -5.90 8.62 -15.06 -0.13 -6.03 16 8 H 0.07 1.76 7.16 -52.49 -0.38 1.38 16 9 N -0.71 -15.49 4.80 -45.38 -0.22 -15.70 16 10 C 0.19 3.31 0.48 -129.81 -0.06 3.25 16 11 C 0.12 2.13 4.46 -4.04 -0.02 2.12 16 12 N -0.70 -11.63 5.26 -60.30 -0.32 -11.95 16 13 C 0.52 8.33 7.83 -10.98 -0.09 8.24 16 14 O -0.56 -10.54 15.98 5.56 0.09 -10.45 16 15 C -0.15 -2.01 5.89 -27.88 -0.16 -2.17 16 16 C 0.15 1.83 5.80 -4.04 -0.02 1.81 16 17 N -0.37 -4.61 3.68 -61.37 -0.23 -4.83 16 18 C 0.06 0.59 11.45 -17.22 -0.20 0.39 16 19 C -0.28 -2.85 10.80 -40.01 -0.43 -3.28 16 20 C 0.04 0.45 12.03 -17.36 -0.21 0.24 16 21 N -0.30 -4.01 12.42 30.63 0.38 -3.63 16 22 C -0.12 -1.85 5.45 -25.07 -0.14 -1.99 16 23 C -0.12 -1.70 6.78 -25.62 -0.17 -1.88 16 24 C -0.11 -1.72 6.78 -25.62 -0.17 -1.89 16 25 C -0.13 -2.20 5.86 -25.07 -0.15 -2.35 16 26 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.39 9.12 7.71 -40.82 -0.31 8.80 16 28 H 0.07 1.33 7.50 -51.93 -0.39 0.94 16 29 H 0.06 0.94 8.13 -51.93 -0.42 0.51 16 30 H 0.40 6.66 8.11 -40.82 -0.33 6.33 16 31 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 32 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.10 1.16 8.03 -51.93 -0.42 0.75 16 34 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.18 1.41 8.06 -52.48 -0.42 0.99 16 38 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 39 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.39 7.23 -51.93 -0.38 1.02 16 45 H 0.05 0.79 8.05 -51.93 -0.42 0.37 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -30.53 371.30 -8.29 -38.82 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: -7.24 Total: 14.89 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -2.05 Total: -3.84 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: 0.35 Total: -61.70 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.53 -8.29 -38.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753660939.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.276 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds