Wall clock time and date at job start Tue Mar 31 2020 09:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.58676 * 2 1 4 4 C 1.53199 * 109.58727 * 239.71481 * 2 1 3 5 5 C 1.53038 * 109.31192 * 185.43274 * 4 2 1 6 6 C 1.53041 * 109.53939 * 61.37043 * 5 4 2 7 7 H 1.08997 * 109.50250 * 178.65118 * 6 5 4 8 8 N 1.46499 * 109.49984 * 58.57967 * 6 5 4 9 9 C 1.34777 * 119.99758 * 155.06453 * 8 6 5 10 10 O 1.21275 * 120.00551 * 0.02562 * 9 8 6 11 11 C 1.50709 * 119.99387 * 180.02562 * 9 8 6 12 12 C 1.52998 * 109.46526 * 180.02562 * 11 9 8 13 13 C 1.50707 * 109.47051 * 180.02562 * 12 11 9 14 14 N 1.30500 * 125.64545 * 305.02725 * 13 12 11 15 15 C 1.34133 * 109.25234 * 179.97438 * 14 13 12 16 16 C 1.34664 * 108.01917 * 359.97438 * 15 14 13 17 17 N 1.35037 * 125.65250 * 125.00021 * 13 12 11 18 18 H 0.97004 * 126.39917 * 0.05551 * 17 13 12 19 19 C 1.53198 * 109.33769 * 298.61763 * 6 5 4 20 20 N 1.46927 * 109.70603 * 120.35945 * 2 1 3 21 21 C 1.36940 * 120.62874 * 353.48141 * 20 2 1 22 22 H 1.08000 * 119.99748 * 28.64715 * 21 20 2 23 23 C 1.38809 * 120.00190 * 208.64709 * 21 20 2 24 24 N 1.31619 * 120.00229 * 14.65438 * 23 21 20 25 25 Si 1.86803 * 120.00179 * 194.66211 * 23 21 20 26 26 H 1.48504 * 109.47010 * 59.99519 * 25 23 21 27 27 H 1.48496 * 109.47044 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.47031 * 300.00155 * 25 23 21 29 29 H 1.09000 * 109.46637 * 180.28166 * 1 2 3 30 30 H 1.08998 * 109.47004 * 300.27765 * 1 2 3 31 31 H 1.08998 * 109.47254 * 60.28402 * 1 2 3 32 32 H 1.08999 * 109.49353 * 65.48532 * 4 2 1 33 33 H 1.09000 * 109.52279 * 305.40198 * 4 2 1 34 34 H 1.08997 * 109.46627 * 301.34900 * 5 4 2 35 35 H 1.09003 * 109.45643 * 181.38592 * 5 4 2 36 36 H 0.97000 * 119.99999 * 335.07619 * 8 6 5 37 37 H 1.08995 * 109.46913 * 60.00667 * 11 9 8 38 38 H 1.09000 * 109.46963 * 300.00136 * 11 9 8 39 39 H 1.09001 * 109.47721 * 60.00222 * 12 11 9 40 40 H 1.09000 * 109.47446 * 299.99639 * 12 11 9 41 41 H 1.08003 * 125.98638 * 180.02562 * 15 14 13 42 42 H 1.08010 * 126.58783 * 179.73670 * 16 15 14 43 43 H 1.09002 * 109.58961 * 174.43644 * 19 6 5 44 44 H 1.09004 * 109.58514 * 294.86520 * 19 6 5 45 45 H 0.96993 * 120.00109 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2464 5 6 3.5678 -0.8433 -1.1729 6 6 3.9604 -1.6608 0.0598 7 1 5.0449 -1.7630 0.0985 8 7 3.3466 -2.9888 -0.0182 9 6 3.9054 -4.0286 0.6321 10 8 4.9160 -3.8651 1.2822 11 6 3.2742 -5.3948 0.5513 12 6 4.0996 -6.3872 1.3728 13 6 3.4688 -7.7535 1.2916 14 7 2.2316 -8.0391 1.5929 15 6 2.0210 -9.3498 1.4008 16 6 3.1711 -9.8969 0.9634 17 7 4.0901 -8.8848 0.8945 18 1 5.0149 -8.9653 0.6131 19 6 3.4692 -0.9439 1.3215 20 7 2.0254 -0.6991 1.1935 21 6 1.1585 -1.1152 2.1685 22 1 0.1394 -1.3661 1.9137 23 6 1.5895 -1.2144 3.4843 24 7 2.7187 -0.6467 3.8515 25 14 0.5670 -2.1539 4.7338 26 1 0.4242 -3.5656 4.2955 27 1 1.2408 -2.1124 6.0564 28 1 -0.7767 -1.5312 4.8424 29 1 -0.3632 -1.0277 0.0051 30 1 -0.3633 0.5181 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7638 -0.1655 -2.1372 33 1 1.6050 -1.7247 -1.2927 34 1 4.0046 0.1528 -1.1022 35 1 3.9380 -1.3391 -2.0703 36 1 2.5382 -3.1196 -0.5380 37 1 3.2439 -5.7201 -0.4885 38 1 2.2599 -5.3504 0.9479 39 1 4.1296 -6.0617 2.4127 40 1 5.1140 -6.4316 0.9766 41 1 1.0915 -9.8742 1.5670 42 1 3.3378 -10.9357 0.7191 43 1 3.6587 -1.5689 2.1942 44 1 3.9927 0.0061 1.4291 45 1 3.0201 -0.7164 4.7708 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132024912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:02 Heat of formation + Delta-G solvation = 33.784809 kcal Electronic energy + Delta-G solvation = -26039.576075 eV Core-core repulsion = 22479.214355 eV Total energy + Delta-G solvation = -3560.361720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.07640 -39.43496 -37.58221 -34.09787 -33.46964 -32.67351 -32.53857 -30.70598 -29.82097 -28.70330 -26.23375 -25.06094 -24.35101 -22.11154 -21.64408 -20.85571 -20.36443 -19.90256 -18.66594 -18.02945 -16.67700 -16.19166 -15.47301 -15.35919 -15.08815 -14.48516 -14.24934 -14.01464 -13.88814 -13.74226 -13.38756 -13.21841 -13.00168 -12.81851 -12.47641 -12.35187 -11.86874 -11.77541 -11.17666 -11.12242 -11.03079 -10.86898 -10.82540 -10.60497 -10.33141 -10.27674 -10.08756 -10.01837 -9.89513 -9.50033 -9.40054 -9.21960 -8.45369 -8.36773 -8.27232 -6.53748 -5.67096 -3.11397 1.96097 2.99280 3.10984 3.27484 3.46561 3.53218 3.55648 3.87223 4.45552 4.58205 4.90232 5.11309 5.14308 5.27044 5.36289 5.40798 5.43230 5.53387 5.56598 5.58753 5.65295 5.72313 5.98961 6.05893 6.13137 6.16671 6.17659 6.20165 6.37003 6.39283 6.48801 6.57544 6.65521 6.68413 6.75755 6.96833 7.09548 7.17903 7.25914 7.46986 7.78303 7.90843 8.06960 8.19874 8.56503 8.88847 9.31130 9.95634 10.51009 11.40535 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.012689 B = 0.004568 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2206.167470 B = 6127.587694 C = 7177.860935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 H 0.023 0.977 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.074 0.926 8 N -0.700 5.700 9 C 0.515 3.485 10 O -0.552 6.552 11 C -0.129 4.129 12 C -0.017 4.017 13 C 0.217 3.783 14 N -0.485 5.485 15 C -0.027 4.027 16 C -0.067 4.067 17 N -0.568 5.568 18 H 0.418 0.582 19 C 0.162 3.838 20 N -0.583 5.583 21 C -0.250 4.250 22 H 0.068 0.932 23 C 0.007 3.993 24 N -0.901 5.901 25 Si 0.895 3.105 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.284 1.284 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.036 0.964 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.049 0.951 36 H 0.395 0.605 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.168 0.832 42 H 0.174 0.826 43 H 0.100 0.900 44 H 0.022 0.978 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -12.525 -11.639 17.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.059 3.941 3 H 0.041 0.959 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.012 3.988 7 H 0.092 0.908 8 N -0.350 5.350 9 C 0.301 3.699 10 O -0.431 6.431 11 C -0.170 4.170 12 C -0.057 4.057 13 C -0.047 4.047 14 N -0.205 5.205 15 C -0.175 4.175 16 C -0.200 4.200 17 N -0.172 5.172 18 H 0.255 0.745 19 C 0.035 3.965 20 N -0.306 5.306 21 C -0.380 4.380 22 H 0.085 0.915 23 C -0.192 4.192 24 N -0.545 5.545 25 Si 0.725 3.275 26 H -0.207 1.207 27 H -0.218 1.218 28 H -0.211 1.211 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.230 0.770 37 H 0.103 0.897 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.186 0.814 42 H 0.192 0.808 43 H 0.118 0.882 44 H 0.040 0.960 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.729 -11.828 -10.700 16.181 hybrid contribution 0.055 -1.320 0.074 1.323 sum 2.785 -13.148 -10.626 17.133 Atomic orbital electron populations 1.21793 0.96153 1.01280 1.00092 1.20446 0.92842 0.93585 0.87247 0.95916 1.22067 0.95165 1.00701 0.99037 1.21685 0.96994 1.00107 0.96840 1.21759 0.96859 0.82044 0.98136 0.90838 1.45831 1.29315 1.08561 1.51276 1.20324 0.84437 0.86138 0.79050 1.90667 1.25755 1.85454 1.41206 1.21500 1.02005 0.92101 1.01423 1.19712 0.97547 0.85026 1.03381 1.23457 0.89633 0.90119 1.01510 1.70311 1.14298 1.15061 1.20782 1.22393 0.98599 0.91009 1.05522 1.22708 0.91034 0.94645 1.11621 1.43342 1.13467 1.08443 1.51917 0.74470 1.21220 0.83600 0.97039 0.94645 1.44055 1.02709 1.64784 1.19053 1.19045 0.94541 1.38097 0.86271 0.91479 1.25023 0.97607 0.99647 0.96923 1.69967 1.22778 1.44738 1.17025 0.86490 0.79536 0.80530 0.80972 1.20747 1.21766 1.21082 0.92894 0.92102 0.94479 0.92992 0.92623 0.91268 0.93184 0.77046 0.89706 0.87539 0.88135 0.89864 0.81445 0.80832 0.88239 0.95957 0.93684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 7.95 37.16 0.30 -2.18 16 2 C 0.17 3.27 3.49 -67.60 -0.24 3.04 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.13 -2.07 5.21 -26.61 -0.14 -2.21 16 5 C -0.12 -1.86 5.59 -26.69 -0.15 -2.01 16 6 C 0.12 2.23 2.81 -67.81 -0.19 2.04 16 7 H 0.07 1.43 7.58 -51.93 -0.39 1.04 16 8 N -0.70 -12.30 4.92 -53.69 -0.26 -12.56 16 9 C 0.51 9.32 7.80 -10.98 -0.09 9.24 16 10 O -0.55 -11.88 15.65 5.56 0.09 -11.79 16 11 C -0.13 -1.87 5.65 -27.88 -0.16 -2.03 16 12 C -0.02 -0.23 5.13 -27.88 -0.14 -0.38 16 13 C 0.22 2.89 7.43 -155.42 -1.16 1.73 16 14 N -0.48 -7.49 11.21 -10.81 -0.12 -7.61 16 15 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 16 C -0.07 -0.63 12.04 -16.56 -0.20 -0.83 16 17 N -0.57 -5.57 6.15 -10.23 -0.06 -5.63 16 18 H 0.42 2.69 8.96 -40.82 -0.37 2.32 16 19 C 0.16 3.86 4.89 -3.67 -0.02 3.84 16 20 N -0.58 -13.90 2.91 -164.71 -0.48 -14.38 16 21 C -0.25 -6.64 8.63 -15.06 -0.13 -6.77 16 22 H 0.07 1.75 6.20 -52.49 -0.33 1.42 16 23 C 0.01 0.19 4.97 -17.43 -0.09 0.10 16 24 N -0.90 -26.67 11.09 55.49 0.62 -26.05 16 25 Si 0.89 22.44 29.58 -169.99 -5.03 17.41 16 26 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 29 H 0.05 0.97 7.41 -51.93 -0.38 0.58 16 30 H 0.06 1.22 7.66 -51.93 -0.40 0.82 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.87 6.40 -51.93 -0.33 0.54 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.39 6.25 6.77 -40.82 -0.28 5.97 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 40 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 42 H 0.17 0.98 8.06 -52.48 -0.42 0.56 16 43 H 0.10 2.81 6.02 -51.93 -0.31 2.50 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 359.04 15.07 5.41 5.41 Total: -1.00 -33.87 359.04 -9.44 -43.31 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -6.99 Total: 8.84 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -2.61 Total: 3.05 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -0.31 Total: -66.23 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.79 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.03 Total: 17.41 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.87 -9.44 -43.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132024912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.091 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds