Wall clock time and date at job start Tue Mar 31 2020 09:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.58689 * 2 1 4 4 C 1.53194 * 109.58678 * 120.43071 * 2 1 3 5 5 C 1.53042 * 109.30842 * 174.42280 * 4 2 1 6 6 C 1.53045 * 109.53844 * 298.63186 * 5 4 2 7 7 H 1.09002 * 109.52522 * 181.33510 * 6 5 4 8 8 N 1.46504 * 109.49705 * 301.41996 * 6 5 4 9 9 C 1.34776 * 119.99688 * 204.83671 * 8 6 5 10 10 O 1.21280 * 120.00113 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00014 * 180.02562 * 9 8 6 12 12 C 1.53003 * 109.46892 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46819 * 179.97438 * 12 11 9 14 14 N 1.30495 * 125.65120 * 305.02859 * 13 12 11 15 15 C 1.34127 * 109.25714 * 179.97438 * 14 13 12 16 16 C 1.34664 * 108.02056 * 359.97438 * 15 14 13 17 17 N 1.35045 * 125.64919 * 124.71453 * 13 12 11 18 18 H 0.97002 * 126.39672 * 359.97438 * 17 13 12 19 19 C 1.53188 * 109.30873 * 61.36764 * 6 5 4 20 20 N 1.46925 * 108.78169 * 305.36272 * 19 6 5 21 21 C 1.36929 * 120.63326 * 233.63251 * 20 19 6 22 22 H 1.08008 * 120.00069 * 150.15973 * 21 20 19 23 23 C 1.38815 * 120.00283 * 330.15493 * 21 20 19 24 24 N 1.31618 * 119.99503 * 344.49409 * 23 21 20 25 25 Si 1.86792 * 120.00057 * 164.49523 * 23 21 20 26 26 H 1.48501 * 109.47173 * 90.00234 * 25 23 21 27 27 H 1.48499 * 109.47001 * 209.99940 * 25 23 21 28 28 H 1.48499 * 109.47324 * 329.99922 * 25 23 21 29 29 H 1.08999 * 109.47358 * 180.28046 * 1 2 3 30 30 H 1.09004 * 109.46730 * 300.28052 * 1 2 3 31 31 H 1.08995 * 109.47070 * 60.27444 * 1 2 3 32 32 H 1.09000 * 109.49814 * 294.36899 * 4 2 1 33 33 H 1.08996 * 109.49697 * 54.43824 * 4 2 1 34 34 H 1.09004 * 109.45785 * 178.61764 * 5 4 2 35 35 H 1.08997 * 109.46317 * 58.65885 * 5 4 2 36 36 H 0.96994 * 120.00074 * 24.83352 * 8 6 5 37 37 H 1.08993 * 109.47141 * 59.99557 * 11 9 8 38 38 H 1.09003 * 109.46718 * 299.99700 * 11 9 8 39 39 H 1.08993 * 109.47219 * 299.99474 * 12 11 9 40 40 H 1.08999 * 109.47513 * 60.00180 * 12 11 9 41 41 H 1.07997 * 125.99204 * 180.02562 * 15 14 13 42 42 H 1.08000 * 126.59492 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.58704 * 65.15449 * 19 6 5 44 44 H 1.09001 * 109.58689 * 185.57421 * 19 6 5 45 45 H 0.97004 * 119.99787 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1689 6 6 3.9569 -1.6656 -0.0658 7 1 5.0412 -1.7699 -0.1064 8 7 3.3405 -2.9924 0.0108 9 6 3.8952 -4.0319 -0.6436 10 8 4.9043 -3.8688 -1.2962 11 6 3.2608 -5.3967 -0.5654 12 6 4.0826 -6.3891 -1.3904 13 6 3.4486 -7.7540 -1.3117 14 7 3.1723 -8.4020 -0.2132 15 6 2.6148 -9.5817 -0.5239 16 6 2.5424 -9.6677 -1.8659 17 7 3.0668 -8.5065 -2.3660 18 1 3.1496 -8.2689 -3.3028 19 6 3.4650 -0.9452 -1.3250 20 7 2.0225 -0.6980 -1.1955 21 6 1.1536 -1.1106 -2.1700 22 1 0.1396 -1.3781 -1.9115 23 6 1.5759 -1.1850 -3.4903 24 7 2.6864 -0.5835 -3.8608 25 14 0.5681 -2.1387 -4.7409 26 1 -0.4260 -1.2326 -5.3702 27 1 1.4682 -2.6885 -5.7862 28 1 -0.1391 -3.2532 -4.0605 29 1 -0.3634 -1.0276 0.0050 30 1 -0.3633 0.5182 0.8875 31 1 -0.3633 0.5095 -0.8924 32 1 1.7661 -0.1696 2.1366 33 1 1.6025 -1.7268 1.2894 34 1 3.9379 -1.3475 2.0650 35 1 4.0062 0.1459 1.0995 36 1 2.5332 -3.1228 0.5324 37 1 2.2458 -5.3486 -0.9596 38 1 3.2319 -5.7248 0.4737 39 1 4.1120 -6.0612 -2.4294 40 1 5.0975 -6.4370 -0.9957 41 1 2.2816 -10.3310 0.1789 42 1 2.1436 -10.4927 -2.4376 43 1 3.9903 0.0039 -1.4317 44 1 3.6517 -1.5688 -2.1993 45 1 2.9817 -0.6358 -4.7833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132024913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:05 Heat of formation + Delta-G solvation = 31.652488 kcal Electronic energy + Delta-G solvation = -26036.558966 eV Core-core repulsion = 22476.104782 eV Total energy + Delta-G solvation = -3560.454185 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.07522 -39.44875 -37.60504 -34.12458 -33.47695 -32.70922 -32.52730 -30.72129 -29.88813 -28.70911 -26.25692 -25.09719 -24.36304 -22.15507 -21.64479 -20.85981 -20.37812 -19.90951 -18.69529 -18.02549 -16.68287 -16.22825 -15.55197 -15.39678 -14.88240 -14.74150 -14.18001 -13.98232 -13.94945 -13.77295 -13.42696 -13.30572 -12.97692 -12.84531 -12.49117 -12.37998 -11.85272 -11.83541 -11.20984 -11.14734 -11.05239 -10.94720 -10.84616 -10.71347 -10.38921 -10.32448 -10.09581 -10.07869 -9.95950 -9.52403 -9.44095 -9.23038 -8.46816 -8.43745 -8.28546 -6.57723 -5.74897 -3.18790 1.97306 3.01662 3.08858 3.27043 3.34625 3.41539 3.42656 3.85967 4.44357 4.49008 4.92088 5.09574 5.17333 5.27739 5.33139 5.37531 5.41357 5.51947 5.53517 5.58518 5.62483 5.79071 5.95625 6.04361 6.10988 6.13025 6.15245 6.18329 6.35650 6.37062 6.47163 6.56398 6.63826 6.67618 6.73535 6.94422 7.06832 7.15738 7.26787 7.43612 7.70934 7.83960 8.03417 8.18615 8.50071 8.87823 9.24257 9.88882 10.45949 11.33107 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.004608 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.259708 B = 6074.567457 C = 7183.637542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.075 0.925 8 N -0.700 5.700 9 C 0.515 3.485 10 O -0.552 6.552 11 C -0.129 4.129 12 C -0.018 4.018 13 C 0.218 3.782 14 N -0.490 5.490 15 C -0.029 4.029 16 C -0.064 4.064 17 N -0.566 5.566 18 H 0.420 0.580 19 C 0.163 3.837 20 N -0.583 5.583 21 C -0.249 4.249 22 H 0.067 0.933 23 C 0.006 3.994 24 N -0.898 5.898 25 Si 0.894 3.106 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.281 1.281 29 H 0.051 0.949 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.395 0.605 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.168 0.832 42 H 0.175 0.825 43 H 0.024 0.976 44 H 0.094 0.906 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.306 -11.491 7.333 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.012 3.988 7 H 0.093 0.907 8 N -0.350 5.350 9 C 0.301 3.699 10 O -0.431 6.431 11 C -0.170 4.170 12 C -0.057 4.057 13 C -0.046 4.046 14 N -0.210 5.210 15 C -0.178 4.178 16 C -0.198 4.198 17 N -0.169 5.169 18 H 0.258 0.742 19 C 0.037 3.963 20 N -0.306 5.306 21 C -0.378 4.378 22 H 0.084 0.916 23 C -0.193 4.193 24 N -0.542 5.542 25 Si 0.724 3.276 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.207 1.207 29 H 0.070 0.930 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.230 0.770 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.115 0.885 41 H 0.185 0.815 42 H 0.192 0.808 43 H 0.042 0.958 44 H 0.113 0.887 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.619 -11.088 7.526 13.415 hybrid contribution -1.167 -0.849 -1.853 2.349 sum -0.548 -11.937 5.674 13.228 Atomic orbital electron populations 1.21796 0.96179 1.01168 1.00164 1.20465 0.92844 0.93623 0.87230 0.95830 1.22058 0.95204 1.00688 0.98986 1.21686 0.96958 1.00119 0.96894 1.21751 0.96920 0.82049 0.98045 0.90744 1.45832 1.29468 1.08633 1.51064 1.20328 0.84480 0.86060 0.79077 1.90670 1.25765 1.85363 1.41305 1.21497 1.00587 0.92098 1.02856 1.19713 0.98960 0.84730 1.02306 1.23428 1.02320 0.96634 0.82255 1.70231 1.17439 1.06155 1.27180 1.22346 1.05197 0.96765 0.93449 1.22731 1.08429 0.92240 0.96362 1.43364 1.47573 1.15624 1.10362 0.74217 1.21154 0.83697 0.96940 0.94545 1.44038 1.02721 1.64916 1.18932 1.19055 0.94971 1.37805 0.86008 0.91581 1.25053 0.97730 0.99567 0.96938 1.69996 1.23920 1.43687 1.16621 0.86435 0.79423 0.80102 0.81617 1.21478 1.21718 1.20705 0.92990 0.94448 0.92087 0.92932 0.92611 0.93027 0.91245 0.77023 0.88985 0.88229 0.89524 0.88452 0.81461 0.80828 0.95844 0.88738 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 7.95 37.16 0.30 -2.14 16 2 C 0.17 3.22 3.50 -67.60 -0.24 2.99 16 3 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.13 -2.06 5.20 -26.61 -0.14 -2.19 16 5 C -0.12 -1.86 5.59 -26.69 -0.15 -2.01 16 6 C 0.12 2.23 2.81 -67.81 -0.19 2.04 16 7 H 0.07 1.45 7.58 -51.93 -0.39 1.06 16 8 N -0.70 -12.23 4.92 -53.69 -0.26 -12.49 16 9 C 0.51 9.27 7.80 -10.99 -0.09 9.18 16 10 O -0.55 -11.83 15.65 5.56 0.09 -11.74 16 11 C -0.13 -1.86 5.65 -27.88 -0.16 -2.02 16 12 C -0.02 -0.24 5.13 -27.88 -0.14 -0.38 16 13 C 0.22 2.88 7.43 -155.42 -1.16 1.73 16 14 N -0.49 -7.03 11.21 -10.82 -0.12 -7.16 16 15 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 16 C -0.06 -0.63 12.04 -16.56 -0.20 -0.83 16 17 N -0.57 -6.04 6.15 -10.23 -0.06 -6.11 16 18 H 0.42 3.39 8.96 -40.82 -0.37 3.02 16 19 C 0.16 3.85 4.88 -3.71 -0.02 3.83 16 20 N -0.58 -13.68 2.90 -164.77 -0.48 -14.16 16 21 C -0.25 -6.46 8.57 -15.06 -0.13 -6.59 16 22 H 0.07 1.68 6.24 -52.48 -0.33 1.36 16 23 C 0.01 0.17 4.94 -17.43 -0.09 0.08 16 24 N -0.90 -26.07 11.23 55.49 0.62 -25.45 16 25 Si 0.89 21.54 29.58 -169.99 -5.03 16.51 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 29 H 0.05 0.94 7.44 -51.93 -0.39 0.55 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 1.21 7.63 -51.93 -0.40 0.81 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.86 6.40 -51.93 -0.33 0.53 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.40 6.22 6.77 -40.82 -0.28 5.94 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.09 1.18 8.10 -51.93 -0.42 0.76 16 40 H 0.10 1.34 8.10 -51.93 -0.42 0.92 16 41 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.17 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.09 2.62 6.15 -51.93 -0.32 2.30 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 359.24 15.07 5.41 5.41 Total: -1.00 -32.83 359.24 -9.44 -42.26 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -7.00 Total: 9.79 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: -2.60 Total: 3.12 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -0.30 Total: -65.36 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.83 -9.44 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132024913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.915 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds