Wall clock time and date at job start Tue Mar 31 2020 09:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.58689 * 2 1 4 4 C 1.53194 * 109.58678 * 120.43071 * 2 1 3 5 5 C 1.53042 * 109.30842 * 174.42280 * 4 2 1 6 6 C 1.53045 * 109.53844 * 298.63186 * 5 4 2 7 7 H 1.09002 * 109.52522 * 181.33510 * 6 5 4 8 8 N 1.46504 * 109.49705 * 301.41996 * 6 5 4 9 9 C 1.34776 * 119.99688 * 204.83671 * 8 6 5 10 10 O 1.21280 * 120.00113 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00014 * 180.02562 * 9 8 6 12 12 C 1.53003 * 109.46892 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.46819 * 179.97438 * 12 11 9 14 14 N 1.30495 * 125.65120 * 305.02859 * 13 12 11 15 15 C 1.34127 * 109.25714 * 179.97438 * 14 13 12 16 16 C 1.34664 * 108.02056 * 359.97438 * 15 14 13 17 17 N 1.35045 * 125.64919 * 124.71453 * 13 12 11 18 18 H 0.97002 * 126.39672 * 359.97438 * 17 13 12 19 19 C 1.53188 * 109.30873 * 61.36764 * 6 5 4 20 20 N 1.46925 * 108.78169 * 305.36272 * 19 6 5 21 21 C 1.36929 * 120.63326 * 233.63251 * 20 19 6 22 22 H 1.08008 * 120.00069 * 150.15973 * 21 20 19 23 23 C 1.38815 * 120.00283 * 330.15493 * 21 20 19 24 24 N 1.31618 * 119.99503 * 344.49409 * 23 21 20 25 25 Si 1.86792 * 120.00057 * 164.49523 * 23 21 20 26 26 H 1.48501 * 109.47173 * 90.00234 * 25 23 21 27 27 H 1.48499 * 109.47001 * 209.99940 * 25 23 21 28 28 H 1.48499 * 109.47324 * 329.99922 * 25 23 21 29 29 H 1.08999 * 109.47358 * 180.28046 * 1 2 3 30 30 H 1.09004 * 109.46730 * 300.28052 * 1 2 3 31 31 H 1.08995 * 109.47070 * 60.27444 * 1 2 3 32 32 H 1.09000 * 109.49814 * 294.36899 * 4 2 1 33 33 H 1.08996 * 109.49697 * 54.43824 * 4 2 1 34 34 H 1.09004 * 109.45785 * 178.61764 * 5 4 2 35 35 H 1.08997 * 109.46317 * 58.65885 * 5 4 2 36 36 H 0.96994 * 120.00074 * 24.83352 * 8 6 5 37 37 H 1.08993 * 109.47141 * 59.99557 * 11 9 8 38 38 H 1.09003 * 109.46718 * 299.99700 * 11 9 8 39 39 H 1.08993 * 109.47219 * 299.99474 * 12 11 9 40 40 H 1.08999 * 109.47513 * 60.00180 * 12 11 9 41 41 H 1.07997 * 125.99204 * 180.02562 * 15 14 13 42 42 H 1.08000 * 126.59492 * 180.02562 * 16 15 14 43 43 H 1.09003 * 109.58704 * 65.15449 * 19 6 5 44 44 H 1.09001 * 109.58689 * 185.57421 * 19 6 5 45 45 H 0.97004 * 119.99787 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7310 1.2445 5 6 3.5675 -0.8495 1.1689 6 6 3.9569 -1.6656 -0.0658 7 1 5.0412 -1.7699 -0.1064 8 7 3.3405 -2.9924 0.0108 9 6 3.8952 -4.0319 -0.6436 10 8 4.9043 -3.8688 -1.2962 11 6 3.2608 -5.3967 -0.5654 12 6 4.0826 -6.3891 -1.3904 13 6 3.4486 -7.7540 -1.3117 14 7 3.1723 -8.4020 -0.2132 15 6 2.6148 -9.5817 -0.5239 16 6 2.5424 -9.6677 -1.8659 17 7 3.0668 -8.5065 -2.3660 18 1 3.1496 -8.2689 -3.3028 19 6 3.4650 -0.9452 -1.3250 20 7 2.0225 -0.6980 -1.1955 21 6 1.1536 -1.1106 -2.1700 22 1 0.1396 -1.3781 -1.9115 23 6 1.5759 -1.1850 -3.4903 24 7 2.6864 -0.5835 -3.8608 25 14 0.5681 -2.1387 -4.7409 26 1 -0.4260 -1.2326 -5.3702 27 1 1.4682 -2.6885 -5.7862 28 1 -0.1391 -3.2532 -4.0605 29 1 -0.3634 -1.0276 0.0050 30 1 -0.3633 0.5182 0.8875 31 1 -0.3633 0.5095 -0.8924 32 1 1.7661 -0.1696 2.1366 33 1 1.6025 -1.7268 1.2894 34 1 3.9379 -1.3475 2.0650 35 1 4.0062 0.1459 1.0995 36 1 2.5332 -3.1228 0.5324 37 1 2.2458 -5.3486 -0.9596 38 1 3.2319 -5.7248 0.4737 39 1 4.1120 -6.0612 -2.4294 40 1 5.0975 -6.4370 -0.9957 41 1 2.2816 -10.3310 0.1789 42 1 2.1436 -10.4927 -2.4376 43 1 3.9903 0.0039 -1.4317 44 1 3.6517 -1.5688 -2.1993 45 1 2.9817 -0.6358 -4.7833 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132024913.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:04 Heat of formation + Delta-G solvation = 9.619620 kcal Electronic energy + Delta-G solvation = -26037.514383 eV Core-core repulsion = 22476.104782 eV Total energy + Delta-G solvation = -3561.409601 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.95132 -40.95518 -39.18067 -35.75508 -34.66495 -34.47218 -33.41780 -32.18680 -31.71709 -29.71817 -27.84942 -26.82531 -25.59715 -23.85786 -22.48588 -22.23153 -21.75730 -21.07414 -20.32662 -18.99074 -18.20287 -17.89626 -17.09108 -16.80500 -16.31149 -15.94943 -15.78540 -15.43141 -15.16579 -14.96637 -14.81549 -14.58594 -14.42717 -14.10164 -13.96821 -13.71606 -13.44041 -13.00063 -12.93989 -12.86664 -12.60247 -12.50701 -12.40405 -12.19303 -12.09989 -12.06675 -11.55833 -11.18530 -11.03322 -11.01197 -11.00541 -10.75964 -10.49910 -9.86144 -9.31375 -8.54133 -7.80021 -5.25573 1.11859 1.41425 1.42476 1.50777 1.81622 2.12048 2.22020 2.51177 2.55759 3.35404 3.46732 3.66058 3.91919 3.98303 4.07316 4.12964 4.16866 4.22927 4.37681 4.52175 4.52854 4.64492 4.67659 4.69352 4.77167 4.85224 4.94816 4.98805 5.01986 5.07068 5.13283 5.14679 5.21490 5.29372 5.35794 5.58152 5.64037 5.72964 5.76752 5.81079 5.85396 6.46704 6.47580 6.76767 7.14734 7.21032 7.46189 7.95237 8.46924 9.25326 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.012535 B = 0.004608 C = 0.003897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.259708 B = 6074.567457 C = 7183.637542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.011 0.989 4 C -0.119 4.119 5 C -0.111 4.111 6 C 0.128 3.872 7 H 0.064 0.936 8 N -0.693 5.693 9 C 0.508 3.492 10 O -0.592 6.592 11 C -0.114 4.114 12 C -0.011 4.011 13 C 0.196 3.804 14 N -0.518 5.518 15 C -0.058 4.058 16 C -0.044 4.044 17 N -0.561 5.561 18 H 0.431 0.569 19 C 0.174 3.826 20 N -0.595 5.595 21 C -0.237 4.237 22 H 0.075 0.925 23 C -0.054 4.054 24 N -0.937 5.937 25 Si 0.950 3.050 26 H -0.287 1.287 27 H -0.302 1.302 28 H -0.266 1.266 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.407 0.593 37 H 0.095 0.905 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.188 0.812 42 H 0.214 0.786 43 H -0.008 1.008 44 H 0.048 0.952 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 -13.260 9.438 16.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.048 3.952 3 H 0.029 0.971 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.082 0.918 8 N -0.343 5.343 9 C 0.296 3.704 10 O -0.473 6.473 11 C -0.155 4.155 12 C -0.050 4.050 13 C -0.068 4.068 14 N -0.239 5.239 15 C -0.205 4.205 16 C -0.178 4.178 17 N -0.165 5.165 18 H 0.271 0.729 19 C 0.047 3.953 20 N -0.318 5.318 21 C -0.367 4.367 22 H 0.093 0.907 23 C -0.249 4.249 24 N -0.584 5.584 25 Si 0.780 3.220 26 H -0.214 1.214 27 H -0.230 1.230 28 H -0.191 1.191 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.244 0.756 37 H 0.113 0.887 38 H 0.135 0.865 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.205 0.795 42 H 0.231 0.769 43 H 0.010 0.990 44 H 0.066 0.934 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.303 -12.858 9.675 16.144 hybrid contribution -0.603 -0.282 -2.479 2.567 sum -1.906 -13.141 7.196 15.103 Atomic orbital electron populations 1.21721 0.94736 1.01365 1.00715 1.20770 0.94142 0.93114 0.87169 0.97135 1.21945 0.94743 1.01095 0.97959 1.21656 0.97253 0.99812 0.96129 1.21447 0.96267 0.82797 0.97374 0.91818 1.45768 1.29767 1.07913 1.50899 1.21016 0.83976 0.87381 0.78042 1.90653 1.27674 1.86129 1.42877 1.21411 1.00177 0.89849 1.04080 1.19540 0.98604 0.85275 1.01607 1.23148 1.03928 0.96739 0.83024 1.70151 1.18163 1.07466 1.28100 1.22842 1.06019 0.96670 0.94983 1.23374 1.06082 0.92212 0.96161 1.43407 1.46863 1.15608 1.10642 0.72902 1.20830 0.84096 0.95093 0.95313 1.44258 1.02263 1.65556 1.19769 1.19396 0.95341 1.35639 0.86345 0.90740 1.25751 0.98931 1.01269 0.98940 1.70178 1.26009 1.46086 1.16153 0.85525 0.77894 0.79235 0.79395 1.21411 1.22952 1.19098 0.92897 0.90724 0.94727 0.89365 0.91688 0.89683 0.91173 0.75644 0.88713 0.86529 0.90265 0.89192 0.79495 0.76935 0.98957 0.93401 0.94865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 7.95 71.98 0.57 -3.71 16 2 C 0.15 5.74 3.50 44.97 0.16 5.90 16 3 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 4 C -0.12 -3.31 5.20 30.67 0.16 -3.15 16 5 C -0.11 -3.19 5.59 30.62 0.17 -3.02 16 6 C 0.13 4.80 2.81 45.07 0.13 4.93 16 7 H 0.06 2.54 7.58 -2.39 -0.02 2.52 16 8 N -0.69 -23.62 4.92 -442.15 -2.17 -25.79 16 9 C 0.51 18.37 7.80 87.66 0.68 19.06 16 10 O -0.59 -26.26 15.65 -3.03 -0.05 -26.31 16 11 C -0.11 -3.22 5.65 29.85 0.17 -3.05 16 12 C -0.01 -0.29 5.13 29.85 0.15 -0.14 16 13 C 0.20 4.99 7.43 138.13 1.03 6.02 16 14 N -0.52 -14.20 11.21 -188.14 -2.11 -16.31 16 15 C -0.06 -1.23 11.87 83.52 0.99 -0.24 16 16 C -0.04 -0.74 12.04 83.09 1.00 0.26 16 17 N -0.56 -10.95 6.15 -186.27 -1.15 -12.09 16 18 H 0.43 6.22 8.96 -92.71 -0.83 5.39 16 19 C 0.17 8.50 4.88 86.36 0.42 8.92 16 20 N -0.59 -28.10 2.90 -675.21 -1.96 -30.06 16 21 C -0.24 -12.37 8.57 84.04 0.72 -11.65 16 22 H 0.08 3.73 6.24 -2.91 -0.02 3.71 16 23 C -0.05 -3.03 4.94 84.86 0.42 -2.61 16 24 N -0.94 -57.10 11.23 21.65 0.24 -56.86 16 25 Si 0.95 45.13 29.58 68.60 2.03 47.16 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 28 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 29 H 0.05 1.75 7.44 -2.39 -0.02 1.73 16 30 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 31 H 0.03 1.32 7.63 -2.39 -0.02 1.30 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.06 1.73 6.40 -2.39 -0.02 1.72 16 34 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.41 11.86 6.77 -92.71 -0.63 11.24 16 37 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 39 H 0.08 2.22 8.10 -2.39 -0.02 2.21 16 40 H 0.09 2.53 8.10 -2.39 -0.02 2.51 16 41 H 0.19 2.95 8.06 -2.91 -0.02 2.92 16 42 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 43 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 44 H 0.05 2.80 6.15 -2.39 -0.01 2.78 16 45 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -74.99 359.24 1.15 -73.84 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.45 Total: 28.90 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.77 Total: 17.52 kcal Atomic # 7 Polarization: -133.96 SS G_CDS: -7.15 Total: -141.11 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -74.99 1.15 -73.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132024913.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.457 kcal (2) G-P(sol) polarization free energy of solvation -74.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds