Wall clock time and date at job start Tue Mar 31 2020 09:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.70243 * 2 1 4 4 C 1.53197 * 109.58420 * 120.35064 * 2 1 3 5 5 C 1.53043 * 109.31076 * 174.42110 * 4 2 1 6 6 C 1.53036 * 109.53747 * 298.63653 * 5 4 2 7 7 H 1.09003 * 109.50035 * 301.37915 * 6 5 4 8 8 N 1.46507 * 109.49711 * 181.31640 * 6 5 4 9 9 C 1.34778 * 120.00140 * 155.00252 * 8 6 5 10 10 O 1.21284 * 119.99771 * 359.97438 * 9 8 6 11 11 C 1.50694 * 119.99945 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.46866 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.47007 * 180.02562 * 12 11 9 14 14 N 1.30501 * 125.64873 * 304.97673 * 13 12 11 15 15 C 1.34127 * 109.25732 * 180.02562 * 14 13 12 16 16 C 1.34664 * 108.02112 * 0.02562 * 15 14 13 17 17 N 1.35045 * 125.65346 * 125.00492 * 13 12 11 18 18 H 0.97003 * 126.39528 * 359.97438 * 17 13 12 19 19 C 1.53197 * 109.31544 * 61.36540 * 6 5 4 20 20 N 1.46919 * 108.77140 * 305.36496 * 19 6 5 21 21 C 1.36938 * 120.62954 * 233.58081 * 20 19 6 22 22 H 1.07995 * 120.00419 * 150.87606 * 21 20 19 23 23 C 1.38811 * 120.00084 * 330.87460 * 21 20 19 24 24 N 1.31620 * 120.00140 * 343.81342 * 23 21 20 25 25 Si 1.86799 * 120.00078 * 163.81146 * 23 21 20 26 26 H 1.48506 * 109.47092 * 94.31401 * 25 23 21 27 27 H 1.48512 * 109.46965 * 214.30788 * 25 23 21 28 28 H 1.48500 * 109.47271 * 334.30868 * 25 23 21 29 29 H 1.09001 * 109.47072 * 299.64436 * 1 2 3 30 30 H 1.09006 * 109.46987 * 59.64516 * 1 2 3 31 31 H 1.09000 * 109.46987 * 179.64619 * 1 2 3 32 32 H 1.09001 * 109.49328 * 54.47644 * 4 2 1 33 33 H 1.08997 * 109.50059 * 294.37263 * 4 2 1 34 34 H 1.08995 * 109.45818 * 178.61852 * 5 4 2 35 35 H 1.08997 * 109.44616 * 58.64842 * 5 4 2 36 36 H 0.97003 * 119.99666 * 335.00270 * 8 6 5 37 37 H 1.09005 * 109.47344 * 60.00044 * 11 9 8 38 38 H 1.08994 * 109.47344 * 299.99649 * 11 9 8 39 39 H 1.09003 * 109.47137 * 60.00427 * 12 11 9 40 40 H 1.08994 * 109.47593 * 299.99776 * 12 11 9 41 41 H 1.08003 * 125.99070 * 179.97438 * 15 14 13 42 42 H 1.07996 * 126.59714 * 180.02562 * 16 15 14 43 43 H 1.09004 * 109.57999 * 65.15065 * 19 6 5 44 44 H 1.09001 * 109.58698 * 185.57470 * 19 6 5 45 45 H 0.96998 * 120.00567 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 6 3.5675 -0.8479 1.1703 6 6 3.9568 -1.6657 -0.0633 7 1 3.4987 -2.6531 -0.0047 8 7 5.4142 -1.8054 -0.1173 9 6 5.9677 -2.8482 -0.7674 10 8 5.2592 -3.6713 -1.3074 11 6 7.4667 -2.9922 -0.8225 12 6 7.8295 -4.2505 -1.6136 13 6 9.3286 -4.3948 -1.6682 14 7 10.1643 -3.4918 -2.1032 15 6 11.4160 -3.9635 -2.0048 16 6 11.3536 -5.2062 -1.4899 17 7 10.0297 -5.4801 -1.2755 18 1 9.6635 -6.3007 -0.9103 19 6 3.4650 -0.9471 -1.3236 20 7 2.0226 -0.6997 -1.1944 21 6 1.1538 -1.1128 -2.1689 22 1 0.1365 -1.3690 -1.9122 23 6 1.5805 -1.2022 -3.4867 24 7 2.6908 -0.6027 -3.8611 25 14 0.5790 -2.1735 -4.7289 26 1 -0.3432 -1.2569 -5.4465 27 1 1.4930 -2.8199 -5.7048 28 1 -0.2089 -3.2158 -4.0231 29 1 -0.3633 0.5083 0.8932 30 1 -0.3633 0.5194 -0.8868 31 1 -0.3633 -1.0277 -0.0063 32 1 1.6029 -1.7253 1.2914 33 1 1.7660 -0.1667 2.1369 34 1 3.9377 -1.3448 2.0670 35 1 4.0059 0.1474 1.0992 36 1 5.9809 -1.1473 0.3149 37 1 7.8614 -3.0738 0.1903 38 1 7.8979 -2.1185 -1.3111 39 1 7.4349 -4.1693 -2.6265 40 1 7.3984 -5.1240 -1.1247 41 1 12.3161 -3.4389 -2.2896 42 1 12.1878 -5.8606 -1.2843 43 1 3.9904 0.0019 -1.4316 44 1 3.6518 -1.5719 -2.1970 45 1 2.9893 -0.6655 -4.7819 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132024914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:08 Heat of formation + Delta-G solvation = 31.032143 kcal Electronic energy + Delta-G solvation = -25327.343546 eV Core-core repulsion = 21766.862461 eV Total energy + Delta-G solvation = -3560.481085 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.16860 -39.46202 -37.61846 -34.40911 -33.60614 -32.76457 -32.62744 -30.73848 -29.81988 -28.83487 -26.14801 -25.14491 -24.18520 -22.21502 -21.73574 -20.87437 -20.34686 -19.82430 -19.12962 -18.12056 -16.57638 -16.39437 -15.68808 -15.44421 -15.16586 -14.66721 -14.30048 -14.03570 -13.85420 -13.75028 -13.45938 -13.34423 -13.09372 -12.80229 -12.56080 -12.31992 -12.01426 -11.76346 -11.43075 -11.17712 -11.07907 -10.85624 -10.65450 -10.47086 -10.35800 -10.22034 -10.18186 -10.13924 -9.92790 -9.71175 -9.40398 -9.29179 -8.54412 -8.46217 -8.36638 -6.56062 -5.69022 -3.12940 1.87338 2.90385 3.00618 3.09834 3.44903 3.52986 3.54888 3.64998 4.33864 4.58323 4.80142 4.96365 5.03679 5.15309 5.30631 5.38914 5.41303 5.45826 5.53865 5.58954 5.63050 5.73686 5.86984 6.00411 6.02142 6.02470 6.14557 6.30705 6.34686 6.42497 6.48872 6.55236 6.59181 6.66294 6.79300 7.01667 7.08075 7.16383 7.17032 7.37729 7.79581 7.90709 7.96012 8.00043 8.55145 8.71315 9.29780 9.94310 10.49653 11.39143 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.016041 B = 0.003403 C = 0.002956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.085096 B = 8225.137437 C = 9469.434738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.721 5.721 9 C 0.510 3.490 10 O -0.537 6.537 11 C -0.129 4.129 12 C -0.019 4.019 13 C 0.216 3.784 14 N -0.487 5.487 15 C -0.027 4.027 16 C -0.065 4.065 17 N -0.568 5.568 18 H 0.419 0.581 19 C 0.169 3.831 20 N -0.584 5.584 21 C -0.254 4.254 22 H 0.070 0.930 23 C 0.007 3.993 24 N -0.899 5.899 25 Si 0.899 3.101 26 H -0.289 1.289 27 H -0.290 1.290 28 H -0.279 1.279 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.393 0.607 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.169 0.831 42 H 0.175 0.825 43 H 0.017 0.983 44 H 0.094 0.906 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.880 -6.315 10.856 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.099 0.901 8 N -0.371 5.371 9 C 0.295 3.705 10 O -0.414 6.414 11 C -0.170 4.170 12 C -0.058 4.058 13 C -0.048 4.048 14 N -0.207 5.207 15 C -0.176 4.176 16 C -0.198 4.198 17 N -0.171 5.171 18 H 0.256 0.744 19 C 0.042 3.958 20 N -0.307 5.307 21 C -0.383 4.383 22 H 0.087 0.913 23 C -0.192 4.192 24 N -0.543 5.543 25 Si 0.729 3.271 26 H -0.216 1.216 27 H -0.216 1.216 28 H -0.204 1.204 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.226 0.774 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.103 0.897 41 H 0.186 0.814 42 H 0.192 0.808 43 H 0.035 0.965 44 H 0.112 0.888 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 13.229 -6.100 9.962 17.648 hybrid contribution 0.222 -1.329 -0.016 1.347 sum 13.451 -7.429 9.946 18.304 Atomic orbital electron populations 1.21800 0.96033 1.01409 1.00127 1.20487 0.93039 0.93549 0.87118 0.95797 1.22047 0.94377 1.01270 0.98897 1.21676 0.97349 0.99672 0.96731 1.21967 0.78022 1.00752 0.98156 0.90122 1.46080 1.08533 1.26767 1.55742 1.20447 0.90054 0.81507 0.78445 1.90741 1.63677 1.42263 1.44678 1.21517 0.93295 1.00150 1.02015 1.19725 0.83880 0.98707 1.03536 1.23423 0.96238 0.84150 1.00971 1.70272 1.00465 1.29373 1.20554 1.22385 0.95878 0.93936 1.05375 1.22730 0.86144 1.00645 1.10322 1.43348 1.07175 1.16688 1.49888 0.74372 1.21071 0.83474 0.96889 0.94400 1.44028 1.02685 1.64768 1.19226 1.19121 0.94767 1.38294 0.86127 0.91282 1.25061 0.97797 0.99402 0.96981 1.70006 1.24028 1.43533 1.16717 0.86342 0.79327 0.80066 0.81391 1.21586 1.21573 1.20412 0.94388 0.92028 0.92788 0.92128 0.92758 0.93196 0.92297 0.77438 0.89444 0.87667 0.88029 0.89720 0.81392 0.80791 0.96536 0.88828 0.93729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 7.95 37.16 0.30 -2.28 16 2 C 0.16 3.40 3.50 -67.60 -0.24 3.16 16 3 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.15 5.37 -26.61 -0.14 -2.30 16 5 C -0.12 -1.87 5.35 -26.69 -0.14 -2.02 16 6 C 0.12 2.25 2.61 -67.81 -0.18 2.08 16 7 H 0.08 1.78 7.58 -51.93 -0.39 1.39 16 8 N -0.72 -11.51 5.08 -53.68 -0.27 -11.79 16 9 C 0.51 8.51 7.80 -10.99 -0.09 8.43 16 10 O -0.54 -11.41 15.64 5.55 0.09 -11.32 16 11 C -0.13 -1.59 5.65 -27.89 -0.16 -1.75 16 12 C -0.02 -0.23 5.13 -27.88 -0.14 -0.37 16 13 C 0.22 2.57 7.43 -155.41 -1.15 1.41 16 14 N -0.49 -6.66 11.21 -10.81 -0.12 -6.78 16 15 C -0.03 -0.30 11.87 -17.81 -0.21 -0.51 16 16 C -0.06 -0.55 12.04 -16.56 -0.20 -0.75 16 17 N -0.57 -4.99 6.15 -10.23 -0.06 -5.06 16 18 H 0.42 2.37 8.96 -40.82 -0.37 2.00 16 19 C 0.17 4.11 4.87 -3.71 -0.02 4.09 16 20 N -0.58 -14.65 2.99 -164.78 -0.49 -15.14 16 21 C -0.25 -7.00 8.60 -15.06 -0.13 -7.13 16 22 H 0.07 1.86 6.21 -52.49 -0.33 1.53 16 23 C 0.01 0.19 4.93 -17.43 -0.09 0.10 16 24 N -0.90 -26.92 11.22 55.49 0.62 -26.29 16 25 Si 0.90 22.58 29.58 -169.99 -5.03 17.56 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.26 7.66 -51.93 -0.40 0.86 16 31 H 0.05 1.04 7.40 -51.93 -0.38 0.66 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.39 4.93 8.60 -40.82 -0.35 4.58 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.11 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.10 1.43 8.10 -51.93 -0.42 1.01 16 40 H 0.08 0.93 8.10 -51.93 -0.42 0.50 16 41 H 0.17 1.41 8.06 -52.48 -0.42 0.99 16 42 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 2.69 6.11 -51.93 -0.32 2.37 16 45 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 362.71 15.07 5.47 5.47 Total: -1.00 -35.13 362.71 -9.55 -44.68 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.16 Total: 6.50 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -2.59 Total: 2.16 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -0.33 Total: -65.05 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.13 -9.55 -44.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132024914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.715 kcal (2) G-P(sol) polarization free energy of solvation -35.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds