Wall clock time and date at job start Tue Mar 31 2020 09:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.58343 * 2 1 4 4 C 1.53188 * 109.58616 * 239.71460 * 2 1 3 5 5 C 1.53042 * 109.31517 * 185.57406 * 4 2 1 6 6 C 1.53043 * 109.53572 * 61.36767 * 5 4 2 7 7 H 1.08998 * 109.49671 * 58.61491 * 6 5 4 8 8 N 1.46493 * 109.49910 * 178.68644 * 6 5 4 9 9 C 1.34777 * 120.00245 * 205.00136 * 8 6 5 10 10 O 1.21283 * 119.99920 * 359.97438 * 9 8 6 11 11 C 1.50696 * 120.00212 * 179.72014 * 9 8 6 12 12 C 1.53002 * 109.47243 * 180.27198 * 11 9 8 13 13 C 1.50696 * 109.47243 * 179.97438 * 12 11 9 14 14 N 1.30497 * 125.65540 * 304.69895 * 13 12 11 15 15 C 1.34124 * 109.26246 * 179.89423 * 14 13 12 16 16 C 1.34670 * 108.01812 * 0.36224 * 15 14 13 17 17 N 1.35048 * 125.64781 * 125.00285 * 13 12 11 18 18 H 0.96996 * 126.39702 * 359.97438 * 17 13 12 19 19 C 1.53197 * 109.31005 * 298.63543 * 6 5 4 20 20 N 1.46924 * 108.77752 * 54.63777 * 19 6 5 21 21 C 1.36935 * 120.63498 * 126.36897 * 20 19 6 22 22 H 1.08001 * 119.99986 * 209.03259 * 21 20 19 23 23 C 1.38812 * 119.99800 * 29.03043 * 21 20 19 24 24 N 1.31614 * 120.00174 * 15.01783 * 23 21 20 25 25 Si 1.86799 * 119.99945 * 195.01514 * 23 21 20 26 26 H 1.48510 * 109.46906 * 60.00361 * 25 23 21 27 27 H 1.48500 * 109.47143 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47397 * 300.00552 * 25 23 21 29 29 H 1.09002 * 109.47290 * 180.28547 * 1 2 3 30 30 H 1.08999 * 109.47182 * 300.27931 * 1 2 3 31 31 H 1.08998 * 109.47294 * 60.28355 * 1 2 3 32 32 H 1.09006 * 109.49852 * 65.62712 * 4 2 1 33 33 H 1.08996 * 109.50254 * 305.53156 * 4 2 1 34 34 H 1.09000 * 109.45858 * 301.34741 * 5 4 2 35 35 H 1.08994 * 109.46314 * 181.38425 * 5 4 2 36 36 H 0.97000 * 120.00370 * 24.99269 * 8 6 5 37 37 H 1.08995 * 109.47550 * 300.27509 * 11 9 8 38 38 H 1.09009 * 109.47184 * 60.27694 * 11 9 8 39 39 H 1.09003 * 109.46925 * 300.00382 * 12 11 9 40 40 H 1.08999 * 109.47159 * 60.00130 * 12 11 9 41 41 H 1.07995 * 125.99063 * 180.11466 * 15 14 13 42 42 H 1.08000 * 126.59056 * 179.74237 * 16 15 14 43 43 H 1.09007 * 109.58223 * 174.42118 * 19 6 5 44 44 H 1.09002 * 109.58658 * 294.84436 * 19 6 5 45 45 H 0.97002 * 120.00179 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7278 -1.2463 5 6 3.5675 -0.8465 -1.1713 6 6 3.9569 -1.6658 0.0613 7 1 3.4988 -2.6530 0.0016 8 7 5.4142 -1.8054 0.1152 9 6 5.9677 -2.8490 0.7640 10 8 5.2593 -3.6723 1.3037 11 6 7.4666 -2.9961 0.8141 12 6 7.8294 -4.2580 1.5994 13 6 9.3283 -4.4054 1.6489 14 7 10.1241 -4.4375 0.6151 15 6 11.3902 -4.5761 1.0355 16 6 11.3779 -4.6401 2.3806 17 7 10.0701 -4.5319 2.7703 18 1 9.7382 -4.5440 3.6816 19 6 3.4651 -0.9485 1.3225 20 7 2.0226 -0.7010 1.1936 21 6 1.1537 -1.1161 2.1672 22 1 0.1360 -1.3705 1.9100 23 6 1.5809 -1.2100 3.4846 24 7 2.7038 -0.6322 3.8551 25 14 0.5618 -2.1564 4.7317 26 1 0.4326 -3.5699 4.2949 27 1 1.2300 -2.1065 6.0570 28 1 -0.7875 -1.5449 4.8348 29 1 -0.3634 -1.0277 0.0051 30 1 -0.3633 0.5182 0.8875 31 1 -0.3634 0.5094 -0.8925 32 1 1.7660 -0.1642 -2.1371 33 1 1.6029 -1.7237 -1.2935 34 1 4.0060 0.1488 -1.0992 35 1 3.9377 -1.3422 -2.0685 36 1 5.9809 -1.1468 -0.3162 37 1 7.8582 -3.0742 -0.2001 38 1 7.9010 -2.1251 1.3051 39 1 7.4379 -4.1798 2.6137 40 1 7.3951 -5.1289 1.1085 41 1 12.2656 -4.6312 0.4055 42 1 12.2350 -4.7554 3.0275 43 1 3.6519 -1.5745 2.1952 44 1 3.9904 0.0003 1.4316 45 1 3.0026 -0.6981 4.7756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132024915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:11 Heat of formation + Delta-G solvation = 30.363412 kcal Electronic energy + Delta-G solvation = -25331.717080 eV Core-core repulsion = 21771.206997 eV Total energy + Delta-G solvation = -3560.510083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.16303 -39.45797 -37.62393 -34.41254 -33.60142 -32.78678 -32.61543 -30.74265 -29.83043 -28.83296 -26.15551 -25.16224 -24.18502 -22.22078 -21.72998 -20.87134 -20.34029 -19.82378 -19.13648 -18.10991 -16.57280 -16.40986 -15.62396 -15.59185 -14.95750 -14.86064 -14.24521 -14.01663 -13.84915 -13.75718 -13.54042 -13.35723 -13.04024 -12.78874 -12.58806 -12.32659 -12.00147 -11.78020 -11.42320 -11.17655 -11.08826 -10.86626 -10.68024 -10.47322 -10.37960 -10.24283 -10.18788 -10.15929 -9.94444 -9.71752 -9.42298 -9.29065 -8.54586 -8.46529 -8.38505 -6.58592 -5.71716 -3.15949 1.88456 2.92526 2.99684 3.10848 3.43221 3.48615 3.51323 3.65265 4.33799 4.55503 4.81968 4.96426 5.06175 5.15711 5.30660 5.38383 5.40730 5.45909 5.53834 5.59913 5.64750 5.74372 5.85247 5.98802 6.01431 6.02382 6.15250 6.30081 6.34681 6.42214 6.48563 6.55112 6.59144 6.66143 6.79637 7.01894 7.06906 7.15192 7.18239 7.36658 7.78023 7.87561 7.94705 8.00259 8.52698 8.71908 9.27319 9.91664 10.46925 11.36227 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.015985 B = 0.003437 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.273726 B = 8143.900153 C = 9544.088248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.721 5.721 9 C 0.510 3.490 10 O -0.537 6.537 11 C -0.129 4.129 12 C -0.019 4.019 13 C 0.217 3.783 14 N -0.490 5.490 15 C -0.029 4.029 16 C -0.063 4.063 17 N -0.566 5.566 18 H 0.420 0.580 19 C 0.168 3.832 20 N -0.584 5.584 21 C -0.251 4.251 22 H 0.070 0.930 23 C 0.006 3.994 24 N -0.902 5.902 25 Si 0.901 3.099 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.283 1.283 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.037 0.963 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.393 0.607 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.168 0.832 42 H 0.175 0.825 43 H 0.095 0.905 44 H 0.015 0.985 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.938 -3.370 -6.276 15.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.011 3.989 7 H 0.099 0.901 8 N -0.371 5.371 9 C 0.295 3.705 10 O -0.413 6.413 11 C -0.170 4.170 12 C -0.059 4.059 13 C -0.048 4.048 14 N -0.210 5.210 15 C -0.177 4.177 16 C -0.197 4.197 17 N -0.169 5.169 18 H 0.258 0.742 19 C 0.042 3.958 20 N -0.307 5.307 21 C -0.381 4.381 22 H 0.087 0.913 23 C -0.193 4.193 24 N -0.546 5.546 25 Si 0.731 3.269 26 H -0.209 1.209 27 H -0.217 1.217 28 H -0.210 1.210 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.226 0.774 37 H 0.120 0.880 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.117 0.883 41 H 0.186 0.814 42 H 0.192 0.808 43 H 0.113 0.887 44 H 0.033 0.967 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.252 -3.902 -6.553 15.290 hybrid contribution 0.249 -0.154 1.833 1.856 sum 13.502 -4.056 -4.720 14.867 Atomic orbital electron populations 1.21804 0.96041 1.01422 1.00140 1.20485 0.93039 0.93540 0.87109 0.95796 1.22045 0.94409 1.01289 0.98854 1.21678 0.97314 0.99637 0.96826 1.21970 0.78041 1.00785 0.98136 0.90088 1.46070 1.08523 1.26721 1.55793 1.20445 0.90057 0.81468 0.78481 1.90742 1.63679 1.42138 1.44785 1.21518 0.93277 0.98874 1.03314 1.19723 0.83954 0.99443 1.02745 1.23405 0.95940 1.04025 0.81385 1.70233 1.01364 1.20057 1.29333 1.22359 0.95446 1.07433 0.92504 1.22747 0.86807 1.12423 0.97713 1.43361 1.07319 1.55965 1.10283 0.74192 1.21088 0.83436 0.96856 0.94466 1.44023 1.02696 1.64653 1.19350 1.19111 0.94701 1.38090 0.86195 0.91271 1.25056 0.97740 0.99526 0.96982 1.69992 1.23348 1.44479 1.16801 0.86398 0.79494 0.80416 0.80624 1.20931 1.21738 1.20967 0.92778 0.92054 0.94351 0.92734 0.92093 0.92341 0.93082 0.77446 0.87996 0.89123 0.89412 0.88336 0.81425 0.80776 0.88692 0.96658 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 7.94 37.16 0.30 -2.28 16 2 C 0.16 3.39 3.50 -67.60 -0.24 3.15 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.16 5.37 -26.61 -0.14 -2.30 16 5 C -0.12 -1.89 5.35 -26.69 -0.14 -2.03 16 6 C 0.12 2.25 2.61 -67.81 -0.18 2.07 16 7 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 8 N -0.72 -11.54 5.08 -53.69 -0.27 -11.81 16 9 C 0.51 8.54 7.80 -10.99 -0.09 8.45 16 10 O -0.54 -11.44 15.64 5.56 0.09 -11.35 16 11 C -0.13 -1.60 5.66 -27.88 -0.16 -1.76 16 12 C -0.02 -0.23 5.13 -27.88 -0.14 -0.38 16 13 C 0.22 2.57 7.43 -155.42 -1.15 1.42 16 14 N -0.49 -6.46 11.21 -10.82 -0.12 -6.58 16 15 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 16 C -0.06 -0.54 12.04 -16.56 -0.20 -0.74 16 17 N -0.57 -5.26 6.15 -10.23 -0.06 -5.32 16 18 H 0.42 2.76 8.96 -40.82 -0.37 2.40 16 19 C 0.17 4.06 4.86 -3.71 -0.02 4.05 16 20 N -0.58 -14.56 2.99 -164.77 -0.49 -15.05 16 21 C -0.25 -6.89 8.61 -15.06 -0.13 -7.02 16 22 H 0.07 1.84 6.20 -52.49 -0.33 1.52 16 23 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 24 N -0.90 -26.57 11.14 55.49 0.62 -25.95 16 25 Si 0.90 22.33 29.58 -169.99 -5.03 17.30 16 26 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.05 1.04 7.40 -51.93 -0.38 0.65 16 30 H 0.06 1.25 7.66 -51.93 -0.40 0.85 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.39 4.94 8.60 -40.82 -0.35 4.59 16 37 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 39 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 40 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 41 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.18 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.09 2.70 6.06 -51.92 -0.31 2.38 16 44 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -34.53 362.61 -9.56 -44.09 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -7.16 Total: 7.03 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -2.59 Total: 2.18 kcal Atomic # 7 Polarization: -64.38 SS G_CDS: -0.33 Total: -64.71 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.53 -9.56 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132024915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.453 kcal (2) G-P(sol) polarization free energy of solvation -34.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds