Wall clock time and date at job start Tue Mar 31 2020 08:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.49905 * 2 1 4 4 C 1.53196 * 109.49753 * 239.94395 * 2 1 3 5 5 N 1.46920 * 108.77923 * 185.38238 * 4 2 1 6 6 C 1.34768 * 120.63384 * 233.58464 * 5 4 2 7 7 O 1.21280 * 119.99962 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.00414 * 180.02562 * 6 5 4 9 9 C 1.50696 * 109.47153 * 180.02562 * 8 6 5 10 10 C 1.39868 * 126.04146 * 90.02127 * 9 8 6 11 11 N 1.30844 * 108.20218 * 179.97438 * 10 9 8 12 12 N 1.40086 * 108.20537 * 0.02562 * 11 10 9 13 13 C 1.46499 * 126.03748 * 180.02562 * 12 11 10 14 14 C 1.34949 * 107.92189 * 0.25805 * 12 11 10 15 15 C 1.46932 * 118.73838 * 53.85568 * 5 4 2 16 16 C 1.53620 * 108.54352 * 306.09846 * 15 5 4 17 17 C 1.53035 * 109.24461 * 54.85217 * 16 15 5 18 18 H 1.09005 * 109.45556 * 178.49613 * 17 16 15 19 19 N 1.46498 * 109.45895 * 58.53364 * 17 16 15 20 20 C 1.36946 * 120.00239 * 84.93073 * 19 17 16 21 21 H 1.07994 * 119.99443 * 0.02562 * 20 19 17 22 22 C 1.38803 * 120.00055 * 179.97438 * 20 19 17 23 23 N 1.31617 * 120.00441 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00062 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47022 * 90.00349 * 24 22 20 26 26 H 1.48493 * 109.47242 * 210.00478 * 24 22 20 27 27 H 1.48505 * 109.46622 * 330.00469 * 24 22 20 28 28 H 1.08998 * 109.47520 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46983 * 300.06202 * 1 2 3 30 30 H 1.09004 * 109.46997 * 60.05515 * 1 2 3 31 31 H 1.08998 * 109.58734 * 65.59082 * 4 2 1 32 32 H 1.09005 * 109.58020 * 305.17046 * 4 2 1 33 33 H 1.08995 * 109.47264 * 59.99338 * 8 6 5 34 34 H 1.09001 * 109.46604 * 299.99325 * 8 6 5 35 35 H 1.07999 * 125.89841 * 0.02562 * 10 9 8 36 36 H 1.09002 * 109.47391 * 90.01945 * 13 12 11 37 37 H 1.09001 * 109.46813 * 330.02001 * 13 12 11 38 38 H 1.09004 * 109.47041 * 210.02128 * 13 12 11 39 39 H 1.07999 * 126.12286 * 179.73805 * 14 12 11 40 40 H 1.08997 * 109.58435 * 65.92687 * 15 5 4 41 41 H 1.09001 * 109.58750 * 186.35542 * 15 5 4 42 42 H 1.09009 * 109.63375 * 294.86295 * 16 15 5 43 43 H 1.09002 * 109.45762 * 174.73856 * 16 15 5 44 44 H 0.97007 * 120.00416 * 264.93345 * 19 17 16 45 45 H 0.97004 * 120.00369 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7233 -1.2499 5 7 3.5046 -0.8280 -1.1704 6 6 4.2806 -0.3848 -2.1792 7 8 3.7721 0.1058 -3.1649 8 6 5.7802 -0.4998 -2.0829 9 6 6.4084 0.0646 -3.3310 10 6 6.7990 1.3933 -3.5272 11 7 7.3019 1.4980 -4.7306 12 7 7.2466 0.2375 -5.3393 13 6 7.7077 -0.0878 -6.6912 14 6 6.6887 -0.6231 -4.4621 15 6 4.1057 -1.4307 0.0272 16 6 3.5715 -0.6944 1.2652 17 6 2.0415 -0.7231 1.2480 18 1 1.6590 -0.2247 2.1388 19 7 1.5796 -2.1132 1.2303 20 6 1.4501 -2.8068 2.4040 21 1 1.6880 -2.3287 3.3427 22 6 1.0119 -4.1237 2.3873 23 7 0.7214 -4.7062 1.2433 24 14 0.8345 -5.0695 3.9884 25 1 -0.5371 -4.8810 4.5253 26 1 1.0744 -6.5137 3.7394 27 1 1.8253 -4.5657 4.9732 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5148 0.8894 30 1 -0.3633 0.5130 -0.8905 31 1 1.7632 -0.1574 -2.1390 32 1 1.6056 -1.7213 -1.2984 33 1 6.0582 -1.5484 -1.9780 34 1 6.1323 0.0581 -1.2152 35 1 6.7028 2.1942 -2.8091 36 1 8.7547 -0.3889 -6.6554 37 1 7.6033 0.7883 -7.3313 38 1 7.1082 -0.9047 -7.0929 39 1 6.5024 -1.6733 -4.6315 40 1 3.8349 -2.4851 0.0808 41 1 5.1902 -1.3316 -0.0189 42 1 3.9161 0.3397 1.2534 43 1 3.9345 -1.1887 2.1663 44 1 1.3655 -2.5426 0.3872 45 1 0.4155 -5.6267 1.2316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035948113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:38 Heat of formation + Delta-G solvation = 55.452532 kcal Electronic energy + Delta-G solvation = -25607.104623 eV Core-core repulsion = 22047.682485 eV Total energy + Delta-G solvation = -3559.422137 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.27583 -39.79532 -37.58753 -34.19345 -33.73417 -32.85524 -31.69983 -31.30080 -29.13828 -28.57309 -26.60531 -25.52204 -24.45431 -23.44147 -21.60994 -21.15728 -20.72084 -19.31528 -18.07807 -17.36995 -16.90897 -16.68950 -15.55580 -15.31581 -15.21391 -14.62869 -14.41896 -14.23783 -13.93262 -13.64212 -13.38418 -13.30291 -13.06167 -12.85668 -12.69737 -12.54027 -12.35478 -12.12768 -11.84739 -11.42395 -11.31700 -11.15760 -10.91342 -10.77261 -10.62907 -10.46048 -10.41519 -10.18962 -9.81339 -9.54027 -9.47992 -9.44535 -8.93135 -8.39026 -8.12647 -6.97408 -5.79479 -3.07685 1.84258 2.44884 2.71698 2.98016 3.40938 3.46708 3.48055 3.50206 4.38559 4.57021 4.76219 4.90256 4.92846 4.99925 5.10885 5.16073 5.26360 5.33667 5.37845 5.41584 5.54359 5.60688 5.65298 5.74045 5.77892 5.85599 5.98154 6.06763 6.11567 6.13468 6.29066 6.34720 6.45521 6.53385 6.58711 6.69385 6.71722 6.80426 6.93032 6.96596 7.06216 7.63997 7.68278 7.84145 8.39244 8.55209 9.50823 10.08176 10.43212 11.42949 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.003096 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.358439 B = 9040.313483 C = 9462.088179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.064 0.936 4 C 0.120 3.880 5 N -0.604 5.604 6 C 0.511 3.489 7 O -0.548 6.548 8 C -0.060 4.060 9 C -0.214 4.214 10 C 0.064 3.936 11 N -0.303 5.303 12 N -0.380 5.380 13 C 0.104 3.896 14 C 0.068 3.932 15 C 0.113 3.887 16 C -0.150 4.150 17 C 0.179 3.821 18 H 0.049 0.951 19 N -0.719 5.719 20 C -0.236 4.236 21 H 0.069 0.931 22 C -0.012 4.012 23 N -0.933 5.933 24 Si 0.904 3.096 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.180 0.820 36 H 0.072 0.928 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.171 0.829 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.049 0.951 43 H 0.073 0.927 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.409 8.471 -9.650 17.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.337 5.337 6 C 0.299 3.701 7 O -0.426 6.426 8 C -0.101 4.101 9 C -0.226 4.226 10 C -0.123 4.123 11 N -0.124 5.124 12 N -0.162 5.162 13 C -0.038 4.038 14 C -0.078 4.078 15 C -0.009 4.009 16 C -0.191 4.191 17 C 0.068 3.932 18 H 0.067 0.933 19 N -0.361 5.361 20 C -0.367 4.367 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.581 5.581 24 Si 0.735 3.265 25 H -0.219 1.219 26 H -0.219 1.219 27 H -0.209 1.209 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.197 0.803 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.188 0.812 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 12.713 9.393 -11.029 19.273 hybrid contribution -0.592 -1.440 1.342 2.056 sum 12.121 7.953 -9.687 17.435 Atomic orbital electron populations 1.21667 0.94390 1.03118 1.00356 1.21694 0.96371 0.98837 0.95878 0.91709 1.21595 0.78964 1.01303 0.98388 1.48154 1.07000 1.60034 1.18466 1.20634 0.89220 0.77748 0.82502 1.90656 1.75487 1.45187 1.31269 1.19931 0.91515 1.02670 0.95958 1.19476 1.11749 0.94147 0.97249 1.23697 0.97446 0.96783 0.94344 1.77302 1.25096 1.00845 1.09146 1.48352 1.48213 1.06524 1.13081 1.21810 1.00248 1.02569 0.79132 1.22242 0.98399 0.97099 0.90107 1.21820 0.96401 0.98868 0.83829 1.22591 1.00393 0.98609 0.97494 1.20210 0.90867 0.87291 0.94811 0.93258 1.42487 1.78997 1.07722 1.06920 1.19218 1.37063 0.93826 0.86599 0.91278 1.24697 1.02360 0.97216 0.96560 1.69648 1.51786 1.13051 1.23634 0.86243 0.77755 0.79366 0.83116 1.21866 1.21926 1.20855 0.91089 0.92883 0.93840 0.90009 0.90911 0.88518 0.88283 0.80299 0.90932 0.89461 0.89573 0.81160 0.89788 0.91092 0.93268 0.90856 0.78091 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.06 37.16 0.34 -1.89 16 2 C -0.11 -1.77 2.67 -90.50 -0.24 -2.01 16 3 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 4 C 0.12 2.04 5.42 -3.71 -0.02 2.02 16 5 N -0.60 -9.49 2.97 -172.50 -0.51 -10.00 16 6 C 0.51 7.94 7.69 -10.99 -0.08 7.85 16 7 O -0.55 -10.45 15.45 5.56 0.09 -10.36 16 8 C -0.06 -0.70 4.53 -29.03 -0.13 -0.83 16 9 C -0.21 -2.70 4.59 -105.06 -0.48 -3.19 16 10 C 0.06 0.82 11.96 -17.36 -0.21 0.61 16 11 N -0.30 -4.18 12.58 30.63 0.39 -3.80 16 12 N -0.38 -4.42 4.01 -68.16 -0.27 -4.70 16 13 C 0.10 0.72 11.47 59.85 0.69 1.41 16 14 C 0.07 0.78 11.40 -17.22 -0.20 0.59 16 15 C 0.11 1.70 6.11 -3.48 -0.02 1.68 16 16 C -0.15 -2.37 5.79 -26.39 -0.15 -2.52 16 17 C 0.18 3.27 2.53 -67.89 -0.17 3.09 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 N -0.72 -16.26 3.64 -53.39 -0.19 -16.45 16 20 C -0.24 -6.06 9.93 -15.06 -0.15 -6.21 16 21 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 23 N -0.93 -26.81 13.06 55.49 0.72 -26.09 16 24 Si 0.90 21.55 29.55 -169.99 -5.02 16.53 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H 0.07 1.33 7.54 -51.93 -0.39 0.94 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.43 7.01 -51.93 -0.36 1.06 16 32 H 0.07 1.37 6.64 -51.93 -0.34 1.03 16 33 H 0.10 0.97 7.93 -51.93 -0.41 0.55 16 34 H 0.10 0.97 7.70 -51.93 -0.40 0.57 16 35 H 0.18 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.17 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.08 1.50 7.73 -51.93 -0.40 1.10 16 41 H 0.07 0.84 5.93 -51.93 -0.31 0.53 16 42 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.38 9.35 5.93 -40.82 -0.24 9.11 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -32.90 363.10 -7.32 -40.23 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -7.06 Total: 9.00 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -0.93 Total: 0.17 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.13 Total: -61.04 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.90 -7.32 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035948113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.680 kcal (2) G-P(sol) polarization free energy of solvation -32.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds