Wall clock time and date at job start Tue Mar 31 2020 09:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47186 * 2 1 4 4 C 1.52992 * 109.47492 * 120.00662 * 2 1 3 5 5 C 1.53001 * 109.47400 * 184.99925 * 4 2 1 6 6 C 1.52999 * 109.47121 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47121 * 179.97438 * 6 5 4 8 8 N 1.46492 * 109.47271 * 179.97438 * 7 6 5 9 9 C 1.36939 * 120.00238 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00064 * 0.02562 * 9 8 7 11 11 C 1.38816 * 120.00234 * 179.97438 * 9 8 7 12 12 N 1.31622 * 120.00051 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99978 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47181 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46713 * 120.00320 * 13 11 9 16 16 H 1.48503 * 109.46803 * 240.00086 * 13 11 9 17 17 N 1.46507 * 109.46810 * 240.00713 * 2 1 3 18 18 C 1.34775 * 119.99959 * 84.99635 * 17 2 1 19 19 O 1.21276 * 120.00367 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99708 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.47234 * 179.97438 * 20 18 17 22 22 C 1.38602 * 120.79595 * 90.00375 * 21 20 18 23 23 N 1.32331 * 119.10423 * 180.02562 * 22 21 20 24 24 C 1.31794 * 120.81888 * 359.97438 * 23 22 21 25 25 N 1.31795 * 121.75372 * 0.02562 * 24 23 22 26 26 C 1.32334 * 120.81807 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47207 * 59.99028 * 1 2 3 28 28 H 1.08995 * 109.47073 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47021 * 299.99526 * 1 2 3 30 30 H 1.09003 * 109.47275 * 304.99889 * 4 2 1 31 31 H 1.09004 * 109.47269 * 64.99719 * 4 2 1 32 32 H 1.09000 * 109.46665 * 299.99735 * 5 4 2 33 33 H 1.08996 * 109.46943 * 60.00006 * 5 4 2 34 34 H 1.09003 * 109.47331 * 299.99828 * 6 5 4 35 35 H 1.09004 * 109.47492 * 59.99829 * 6 5 4 36 36 H 1.09003 * 109.46877 * 300.00106 * 7 6 5 37 37 H 1.09004 * 109.47077 * 59.99575 * 7 6 5 38 38 H 0.97008 * 120.00306 * 359.97438 * 8 7 6 39 39 H 0.96998 * 120.00360 * 180.02562 * 12 11 9 40 40 H 0.97002 * 119.99696 * 265.00287 * 17 2 1 41 41 H 1.09005 * 109.47307 * 60.00574 * 20 18 17 42 42 H 1.09003 * 109.47659 * 300.00291 * 20 18 17 43 43 H 1.07994 * 120.45169 * 359.97438 * 22 21 20 44 44 H 1.08003 * 119.12654 * 179.71869 * 24 23 22 45 45 H 1.07998 * 120.44737 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3135 6 6 4.0750 -1.3353 2.5623 7 6 5.5999 -1.2279 2.6264 8 7 6.0882 -1.9186 3.8224 9 6 7.4304 -1.9559 4.0915 10 1 8.1288 -1.4758 3.4222 11 6 7.8931 -2.6100 5.2251 12 7 7.0419 -3.1947 6.0411 13 14 9.7241 -2.6614 5.5918 14 1 10.4626 -1.9351 4.5277 15 1 9.9845 -2.0158 6.9034 16 1 10.1805 -4.0739 5.6360 17 7 2.0183 -0.6905 -1.1963 18 6 2.1469 -0.0180 -2.3572 19 8 1.8589 1.1588 -2.4115 20 6 2.6497 -0.7282 -3.5876 21 6 2.6996 0.2400 -4.7414 22 6 3.8411 0.9843 -4.9943 23 7 3.8481 1.8250 -6.0162 24 6 2.7882 1.9583 -6.7881 25 7 1.6857 1.2674 -6.5779 26 6 1.6049 0.4084 -5.5744 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6055 -0.2619 2.1369 31 1 1.7517 -1.7716 1.2054 32 1 3.9994 -1.0729 0.4257 33 1 3.8532 0.4368 1.3573 34 1 3.6404 -0.8763 3.4503 35 1 3.7866 -2.3856 2.5181 36 1 6.0340 -1.6872 1.7383 37 1 5.8886 -0.1777 2.6703 38 1 5.4609 -2.3496 4.4238 39 1 7.3651 -3.6515 6.8334 40 1 2.2489 -1.6317 -1.1529 41 1 1.9774 -1.5505 -3.8328 42 1 3.6490 -1.1201 -3.3982 43 1 4.7129 0.8802 -4.3654 44 1 2.8222 2.6559 -7.6119 45 1 0.6984 -0.1544 -5.4074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170464708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:36 Heat of formation + Delta-G solvation = -1.974646 kcal Electronic energy + Delta-G solvation = -23800.012117 eV Core-core repulsion = 20238.099750 eV Total energy + Delta-G solvation = -3561.912367 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.44879 -40.03265 -37.13263 -35.32510 -34.14494 -34.02646 -33.30289 -31.67415 -30.37779 -28.48946 -27.49346 -24.95865 -24.40047 -23.76944 -22.22402 -21.08142 -20.79097 -20.67162 -18.00644 -17.97944 -17.51420 -17.03899 -16.61949 -15.44800 -15.30519 -15.03795 -14.73278 -14.65468 -14.04934 -14.01371 -13.97692 -13.88630 -13.60618 -13.19325 -13.10238 -12.99437 -12.53165 -12.40089 -11.82144 -11.51949 -11.33888 -11.28757 -11.14884 -11.03940 -10.84300 -10.75238 -10.44117 -10.37002 -10.31396 -9.98770 -9.72585 -9.69076 -9.57475 -9.33276 -8.87974 -6.92078 -5.77216 -3.05686 0.49534 0.74638 2.30755 2.84694 3.42554 3.47448 3.48120 3.50501 3.78976 3.87308 4.12049 4.23153 4.33821 4.40329 4.56451 4.64896 4.83725 4.90007 4.92302 5.04997 5.12921 5.19739 5.34834 5.39321 5.47014 5.51630 5.57129 5.64314 5.73729 5.83746 5.89893 6.01446 6.04774 6.16047 6.26353 6.31167 6.35494 6.42865 6.58413 6.86519 6.90520 7.18912 7.69900 7.71912 7.91058 8.42169 9.52976 10.12071 10.46419 11.45905 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.002156 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.229394 B =12984.583091 C =14293.174611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.140 3.860 3 H 0.088 0.912 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.126 4.126 7 C 0.152 3.848 8 N -0.735 5.735 9 C -0.238 4.238 10 H 0.070 0.930 11 C -0.017 4.017 12 N -0.934 5.934 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.291 1.291 17 N -0.720 5.720 18 C 0.515 3.485 19 O -0.536 6.536 20 C -0.096 4.096 21 C -0.170 4.170 22 C 0.163 3.837 23 N -0.518 5.518 24 C 0.290 3.710 25 N -0.520 5.520 26 C 0.161 3.839 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.383 0.617 39 H 0.254 0.746 40 H 0.402 0.598 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.167 0.833 44 H 0.196 0.804 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.219 4.218 -22.557 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.036 3.964 3 H 0.106 0.894 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.164 4.164 7 C 0.025 3.975 8 N -0.379 5.379 9 C -0.369 4.369 10 H 0.088 0.912 11 C -0.212 4.212 12 N -0.583 5.583 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 N -0.372 5.372 18 C 0.300 3.700 19 O -0.412 6.412 20 C -0.138 4.138 21 C -0.174 4.174 22 C -0.003 4.003 23 N -0.231 5.231 24 C 0.002 3.998 25 N -0.233 5.233 26 C -0.005 4.005 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.216 0.784 39 H 0.064 0.936 40 H 0.237 0.763 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.184 0.816 44 H 0.212 0.788 45 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.212 5.766 -23.381 28.484 hybrid contribution 0.885 -1.282 1.304 2.031 sum -14.326 4.485 -22.077 26.698 Atomic orbital electron populations 1.22170 0.95350 1.02086 1.02508 1.21061 0.93748 0.97732 0.83820 0.89365 1.21944 0.96906 1.00947 0.96708 1.21517 0.93910 1.01095 0.98650 1.21731 0.97273 1.00259 0.97118 1.20646 0.90980 0.95326 0.90564 1.42399 1.05349 1.64984 1.25188 1.19297 0.83908 1.28309 1.05428 0.91170 1.24762 0.97773 1.00997 0.97713 1.69671 1.32695 1.40879 1.15088 0.86105 0.85033 0.77221 0.77788 1.20551 1.21851 1.21849 1.46110 1.67302 1.14209 1.09629 1.20409 0.77807 0.87375 0.84368 1.90746 1.49647 1.15909 1.84945 1.20551 1.05083 0.97538 0.90596 1.21068 0.96953 1.00798 0.98606 1.23142 0.97089 0.87977 0.92066 1.68448 1.30425 1.18545 1.05682 1.24992 0.83697 0.94564 0.96538 1.68430 1.27707 1.07375 1.19831 1.23063 0.97051 0.92078 0.88319 0.92363 0.92432 0.91484 0.90187 0.91281 0.92141 0.92009 0.92050 0.92114 0.96643 0.96597 0.78351 0.93583 0.76334 0.87218 0.86951 0.81575 0.78780 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.48 37.16 0.35 -0.93 16 2 C 0.14 1.21 2.57 -67.93 -0.17 1.03 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 C -0.13 -1.11 4.75 -26.73 -0.13 -1.24 16 5 C -0.11 -1.28 5.10 -26.73 -0.14 -1.42 16 6 C -0.13 -1.91 5.33 -26.73 -0.14 -2.05 16 7 C 0.15 3.05 6.26 -4.05 -0.03 3.03 16 8 N -0.74 -18.92 5.60 -59.91 -0.34 -19.25 16 9 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 10 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 11 C -0.02 -0.49 5.50 -17.43 -0.10 -0.58 16 12 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 13 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 17 N -0.72 -5.16 4.53 -53.81 -0.24 -5.40 16 18 C 0.51 4.40 7.79 -10.99 -0.09 4.32 16 19 O -0.54 -7.01 15.70 5.56 0.09 -6.92 16 20 C -0.10 -0.50 5.88 -29.04 -0.17 -0.67 16 21 C -0.17 -1.32 4.41 -104.36 -0.46 -1.78 16 22 C 0.16 1.45 11.01 -17.20 -0.19 1.26 16 23 N -0.52 -5.30 10.44 -14.58 -0.15 -5.45 16 24 C 0.29 2.67 12.29 -92.15 -1.13 1.53 16 25 N -0.52 -5.09 10.44 -14.58 -0.15 -5.25 16 26 C 0.16 1.33 11.01 -17.21 -0.19 1.14 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.38 10.28 7.67 -40.82 -0.31 9.97 16 39 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 40 H 0.40 1.94 8.60 -40.82 -0.35 1.59 16 41 H 0.11 0.28 8.10 -51.93 -0.42 -0.14 16 42 H 0.11 0.37 8.10 -51.93 -0.42 -0.05 16 43 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.20 1.17 8.06 -52.48 -0.42 0.75 16 45 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -36.16 381.55 -9.42 -45.58 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -7.34 Total: 4.47 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.73 Total: -3.29 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.16 Total: -63.09 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: 0.09 Total: -6.92 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.16 -9.42 -45.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170464708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.605 kcal (2) G-P(sol) polarization free energy of solvation -36.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds