Wall clock time and date at job start Tue Mar 31 2020 09:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47186 * 2 1 4 4 C 1.52992 * 109.47492 * 120.00662 * 2 1 3 5 5 C 1.53001 * 109.47400 * 184.99925 * 4 2 1 6 6 C 1.52999 * 109.47121 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.47121 * 179.97438 * 6 5 4 8 8 N 1.46492 * 109.47271 * 179.97438 * 7 6 5 9 9 C 1.36939 * 120.00238 * 179.97438 * 8 7 6 10 10 H 1.07994 * 120.00064 * 0.02562 * 9 8 7 11 11 C 1.38816 * 120.00234 * 179.97438 * 9 8 7 12 12 N 1.31622 * 120.00051 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 119.99978 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47181 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.46713 * 120.00320 * 13 11 9 16 16 H 1.48503 * 109.46803 * 240.00086 * 13 11 9 17 17 N 1.46507 * 109.46810 * 240.00713 * 2 1 3 18 18 C 1.34775 * 119.99959 * 84.99635 * 17 2 1 19 19 O 1.21276 * 120.00367 * 0.02562 * 18 17 2 20 20 C 1.50699 * 119.99708 * 179.97438 * 18 17 2 21 21 C 1.50700 * 109.47234 * 179.97438 * 20 18 17 22 22 C 1.38602 * 120.79595 * 90.00375 * 21 20 18 23 23 N 1.32331 * 119.10423 * 180.02562 * 22 21 20 24 24 C 1.31794 * 120.81888 * 359.97438 * 23 22 21 25 25 N 1.31795 * 121.75372 * 0.02562 * 24 23 22 26 26 C 1.32334 * 120.81807 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47207 * 59.99028 * 1 2 3 28 28 H 1.08995 * 109.47073 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47021 * 299.99526 * 1 2 3 30 30 H 1.09003 * 109.47275 * 304.99889 * 4 2 1 31 31 H 1.09004 * 109.47269 * 64.99719 * 4 2 1 32 32 H 1.09000 * 109.46665 * 299.99735 * 5 4 2 33 33 H 1.08996 * 109.46943 * 60.00006 * 5 4 2 34 34 H 1.09003 * 109.47331 * 299.99828 * 6 5 4 35 35 H 1.09004 * 109.47492 * 59.99829 * 6 5 4 36 36 H 1.09003 * 109.46877 * 300.00106 * 7 6 5 37 37 H 1.09004 * 109.47077 * 59.99575 * 7 6 5 38 38 H 0.97008 * 120.00306 * 359.97438 * 8 7 6 39 39 H 0.96998 * 120.00360 * 180.02562 * 12 11 9 40 40 H 0.97002 * 119.99696 * 265.00287 * 17 2 1 41 41 H 1.09005 * 109.47307 * 60.00574 * 20 18 17 42 42 H 1.09003 * 109.47659 * 300.00291 * 20 18 17 43 43 H 1.07994 * 120.45169 * 359.97438 * 22 21 20 44 44 H 1.08003 * 119.12654 * 179.71869 * 24 23 22 45 45 H 1.07998 * 120.44737 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 3.5649 -0.6134 1.3135 6 6 4.0750 -1.3353 2.5623 7 6 5.5999 -1.2279 2.6264 8 7 6.0882 -1.9186 3.8224 9 6 7.4304 -1.9559 4.0915 10 1 8.1288 -1.4758 3.4222 11 6 7.8931 -2.6100 5.2251 12 7 7.0419 -3.1947 6.0411 13 14 9.7241 -2.6614 5.5918 14 1 10.4626 -1.9351 4.5277 15 1 9.9845 -2.0158 6.9034 16 1 10.1805 -4.0739 5.6360 17 7 2.0183 -0.6905 -1.1963 18 6 2.1469 -0.0180 -2.3572 19 8 1.8589 1.1588 -2.4115 20 6 2.6497 -0.7282 -3.5876 21 6 2.6996 0.2400 -4.7414 22 6 3.8411 0.9843 -4.9943 23 7 3.8481 1.8250 -6.0162 24 6 2.7882 1.9583 -6.7881 25 7 1.6857 1.2674 -6.5779 26 6 1.6049 0.4084 -5.5744 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6055 -0.2619 2.1369 31 1 1.7517 -1.7716 1.2054 32 1 3.9994 -1.0729 0.4257 33 1 3.8532 0.4368 1.3573 34 1 3.6404 -0.8763 3.4503 35 1 3.7866 -2.3856 2.5181 36 1 6.0340 -1.6872 1.7383 37 1 5.8886 -0.1777 2.6703 38 1 5.4609 -2.3496 4.4238 39 1 7.3651 -3.6515 6.8334 40 1 2.2489 -1.6317 -1.1529 41 1 1.9774 -1.5505 -3.8328 42 1 3.6490 -1.1201 -3.3982 43 1 4.7129 0.8802 -4.3654 44 1 2.8222 2.6559 -7.6119 45 1 0.6984 -0.1544 -5.4074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170464708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:35 Heat of formation + Delta-G solvation = -26.290165 kcal Electronic energy + Delta-G solvation = -23801.066517 eV Core-core repulsion = 20238.099750 eV Total energy + Delta-G solvation = -3562.966767 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.06497 -40.71777 -38.05927 -36.82577 -34.76544 -34.72631 -34.67475 -32.95747 -31.70479 -29.06605 -28.78764 -25.94322 -25.58190 -24.59530 -23.58797 -22.05657 -21.83466 -21.39382 -19.12460 -18.60850 -18.59046 -18.13100 -17.33213 -16.68468 -16.32692 -16.08125 -15.71357 -15.42025 -15.38116 -15.26754 -14.65907 -14.55957 -14.52413 -14.48272 -14.19284 -14.04673 -13.31993 -13.03004 -12.95883 -12.89509 -12.84537 -12.44894 -12.25339 -12.10789 -11.93024 -11.87828 -11.83423 -11.78533 -11.47303 -11.37445 -11.04549 -10.94690 -10.32965 -10.23126 -10.02167 -9.01161 -7.96900 -5.25916 -0.11523 0.11391 1.46921 1.47876 1.58126 1.68718 2.26177 2.55145 2.84680 3.24412 3.29221 3.36649 3.60847 3.63164 3.67188 3.87049 3.99801 4.07381 4.08872 4.17964 4.37440 4.44233 4.46796 4.60076 4.62333 4.66655 4.70729 4.81966 4.89806 4.92134 4.95617 5.01170 5.04593 5.15649 5.28907 5.34084 5.42928 5.46927 5.47526 5.55075 5.63784 5.96104 6.26431 6.63482 7.08140 7.31996 7.33093 8.09216 8.31913 9.26883 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.002156 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.229394 B =12984.583091 C =14293.174611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.062 0.938 4 C -0.117 4.117 5 C -0.104 4.104 6 C -0.113 4.113 7 C 0.147 3.853 8 N -0.750 5.750 9 C -0.247 4.247 10 H 0.074 0.926 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.975 3.025 14 H -0.267 1.267 15 H -0.293 1.293 16 H -0.290 1.290 17 N -0.710 5.710 18 C 0.513 3.487 19 O -0.587 6.587 20 C -0.088 4.088 21 C -0.168 4.168 22 C 0.145 3.855 23 N -0.543 5.543 24 C 0.277 3.723 25 N -0.541 5.541 26 C 0.150 3.850 27 H 0.041 0.959 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.021 0.979 37 H 0.011 0.989 38 H 0.374 0.626 39 H 0.252 0.748 40 H 0.417 0.583 41 H 0.145 0.855 42 H 0.137 0.863 43 H 0.181 0.819 44 H 0.216 0.784 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.357 3.089 -23.300 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.155 4.155 5 C -0.142 4.142 6 C -0.151 4.151 7 C 0.021 3.979 8 N -0.392 5.392 9 C -0.379 4.379 10 H 0.092 0.908 11 C -0.270 4.270 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.191 1.191 15 H -0.220 1.220 16 H -0.217 1.217 17 N -0.363 5.363 18 C 0.301 3.699 19 O -0.468 6.468 20 C -0.128 4.128 21 C -0.173 4.173 22 C -0.020 4.020 23 N -0.256 5.256 24 C -0.010 4.010 25 N -0.254 5.254 26 C -0.016 4.016 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.029 0.971 38 H 0.206 0.794 39 H 0.061 0.939 40 H 0.254 0.746 41 H 0.162 0.838 42 H 0.155 0.845 43 H 0.198 0.802 44 H 0.232 0.768 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -15.348 4.621 -24.153 28.987 hybrid contribution 0.900 -0.902 1.519 1.983 sum -14.447 3.719 -22.633 27.108 Atomic orbital electron populations 1.22105 0.94586 1.02891 1.01931 1.20889 0.94258 0.96554 0.84293 0.91936 1.21837 0.94736 1.02070 0.96809 1.21421 0.95763 0.99977 0.97055 1.21608 0.93682 1.01024 0.98774 1.20872 0.94301 0.94177 0.88523 1.42653 1.04504 1.65388 1.26697 1.19691 0.85351 1.27534 1.05348 0.90812 1.25617 1.02239 1.01315 0.97872 1.69819 1.34602 1.42044 1.15557 0.85048 0.79901 0.77098 0.77563 1.19101 1.21996 1.21727 1.46025 1.66535 1.14839 1.08883 1.20955 0.76824 0.86797 0.85325 1.90736 1.52000 1.18265 1.85752 1.20632 1.07207 0.97226 0.87753 1.21296 0.96195 1.00754 0.99037 1.23536 0.98287 0.88073 0.92102 1.68455 1.31099 1.19493 1.06574 1.25436 0.83536 0.94972 0.97093 1.68462 1.28007 1.08151 1.20792 1.23568 0.98132 0.91891 0.87994 0.93932 0.90851 0.91133 0.90120 0.89496 0.90932 0.92967 0.92783 0.91694 0.96082 0.97115 0.79434 0.93924 0.74558 0.83765 0.84471 0.80208 0.76804 0.79487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.48 71.98 0.68 -1.52 16 2 C 0.14 2.24 2.57 44.99 0.12 2.35 16 3 H 0.06 1.33 7.58 -2.39 -0.02 1.31 16 4 C -0.12 -1.76 4.75 30.59 0.15 -1.61 16 5 C -0.10 -2.14 5.10 30.59 0.16 -1.98 16 6 C -0.11 -3.26 5.33 30.59 0.16 -3.09 16 7 C 0.15 5.78 6.26 86.38 0.54 6.32 16 8 N -0.75 -38.48 5.60 -343.46 -1.92 -40.41 16 9 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 10 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16 11 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 12 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 13 Si 0.98 46.12 29.55 68.60 2.03 48.15 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 16 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 17 N -0.71 -8.36 4.53 -442.54 -2.00 -10.36 16 18 C 0.51 7.79 7.79 87.66 0.68 8.48 16 19 O -0.59 -15.11 15.70 -3.02 -0.05 -15.16 16 20 C -0.09 -0.65 5.88 29.10 0.17 -0.47 16 21 C -0.17 -2.37 4.41 -19.69 -0.09 -2.45 16 22 C 0.15 2.49 11.01 84.70 0.93 3.42 16 23 N -0.54 -11.12 10.44 -200.05 -2.09 -13.21 16 24 C 0.28 5.11 12.29 180.88 2.22 7.34 16 25 N -0.54 -10.40 10.44 -200.05 -2.09 -12.48 16 26 C 0.15 2.30 11.01 84.70 0.93 3.23 16 27 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.33 7.75 -2.39 -0.02 1.31 16 33 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.37 20.22 7.67 -92.70 -0.71 19.50 16 39 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 40 H 0.42 2.47 8.60 -92.71 -0.80 1.67 16 41 H 0.14 0.10 8.10 -2.38 -0.02 0.08 16 42 H 0.14 0.38 8.10 -2.39 -0.02 0.36 16 43 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.22 2.61 8.06 -2.91 -0.02 2.58 16 45 H 0.19 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -79.15 381.55 1.60 -77.55 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -0.52 Total: 22.26 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 7.96 Total: 2.79 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -7.82 Total: -135.59 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.05 Total: -15.16 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -79.15 1.60 -77.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170464708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.258 kcal (2) G-P(sol) polarization free energy of solvation -79.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds