Wall clock time and date at job start Tue Mar 31 2020 09:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47223 * 2 1 4 4 C 1.52999 * 109.46915 * 239.99815 * 2 1 3 5 5 N 1.46497 * 109.47301 * 65.00116 * 4 2 1 6 6 C 1.36940 * 119.99878 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00257 * 0.02562 * 6 5 4 8 8 C 1.38817 * 119.99447 * 179.97438 * 6 5 4 9 9 N 1.31613 * 120.00536 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99667 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47259 * 59.99805 * 10 8 6 12 12 H 1.48497 * 109.47350 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47391 * 300.00186 * 10 8 6 14 14 C 1.52995 * 109.47204 * 119.99808 * 2 1 3 15 15 N 1.46497 * 109.47391 * 295.00213 * 14 2 1 16 16 C 1.34779 * 120.00655 * 179.97438 * 15 14 2 17 17 O 1.21599 * 119.99488 * 0.02562 * 16 15 14 18 18 C 1.47430 * 120.00209 * 179.97438 * 16 15 14 19 19 C 1.41290 * 126.41361 * 359.97438 * 18 16 15 20 20 N 1.30448 * 108.02058 * 180.02562 * 19 18 16 21 21 N 1.39932 * 108.89677 * 0.02562 * 20 19 18 22 22 C 1.46505 * 125.75441 * 179.97438 * 21 20 19 23 23 C 1.52997 * 109.47212 * 305.02558 * 22 21 20 24 24 C 1.52998 * 117.50310 * 243.74638 * 23 22 21 25 25 C 1.52996 * 117.50163 * 175.08612 * 23 22 21 26 26 C 1.34258 * 108.49634 * 0.22920 * 21 20 19 27 27 H 1.09005 * 109.46501 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46733 * 299.99903 * 1 2 3 29 29 H 1.09000 * 109.47092 * 60.00230 * 1 2 3 30 30 H 1.09007 * 109.46717 * 184.99867 * 4 2 1 31 31 H 1.09004 * 109.47136 * 304.99516 * 4 2 1 32 32 H 0.97004 * 119.99993 * 0.02562 * 5 4 2 33 33 H 0.96996 * 120.00151 * 180.02562 * 9 8 6 34 34 H 1.08997 * 109.47373 * 174.99913 * 14 2 1 35 35 H 1.08999 * 109.47328 * 54.99889 * 14 2 1 36 36 H 0.97004 * 119.99727 * 359.97438 * 15 14 2 37 37 H 1.07999 * 125.99289 * 0.05516 * 19 18 16 38 38 H 1.09002 * 109.47068 * 65.02618 * 22 21 20 39 39 H 1.09001 * 109.47372 * 185.02705 * 22 21 20 40 40 H 1.09008 * 115.55245 * 29.41332 * 23 22 21 41 41 H 1.09000 * 117.49561 * 359.97438 * 24 23 22 42 42 H 1.09000 * 117.50593 * 145.01245 * 24 23 22 43 43 H 1.09004 * 117.49898 * 214.97822 * 25 23 22 44 44 H 1.09005 * 117.49813 * 359.97438 * 25 23 22 45 45 H 1.07991 * 126.29388 * 179.75235 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6525 0.0352 -2.4424 6 6 2.0020 -0.4205 -3.6855 7 1 2.5630 -1.3378 -3.7864 8 6 1.6343 0.2962 -4.8161 9 7 0.9502 1.4138 -4.6932 10 14 2.1104 -0.3258 -6.5119 11 1 1.5179 -1.6698 -6.7306 12 1 1.6018 0.6128 -7.5442 13 1 3.5895 -0.4152 -6.6092 14 6 2.0401 -0.7212 1.2492 15 7 1.6525 0.0354 2.4424 16 6 1.9956 -0.4135 3.6660 17 8 2.6273 -1.4463 3.7796 18 6 1.6060 0.3483 4.8666 19 6 0.8771 1.5583 4.8923 20 7 0.7341 1.9170 6.1383 21 7 1.3560 0.9680 6.9573 22 6 1.4182 1.0093 8.4204 23 6 2.0217 2.3421 8.8679 24 6 3.3562 2.2981 9.6148 25 6 2.0665 2.6285 10.3701 26 6 1.8908 0.0162 6.1760 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 3.1264 -0.7995 -1.2055 31 1 1.6054 -1.7199 -1.2951 32 1 1.1489 0.8594 -2.3518 33 1 0.6930 1.9144 -5.4832 34 1 3.1264 -0.7994 1.2056 35 1 1.6055 -1.7197 1.2952 36 1 1.1489 0.8595 2.3517 37 1 0.5034 2.0925 4.0312 38 1 0.4129 0.9100 8.8298 39 1 2.0399 0.1897 8.7809 40 1 1.8466 3.1854 8.1997 41 1 3.8041 1.3195 9.7879 42 1 4.0590 3.1124 9.4384 43 1 1.9212 3.6603 10.6903 44 1 1.6656 1.8675 11.0397 45 1 2.4405 -0.8511 6.5104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:37 Heat of formation + Delta-G solvation = 66.897177 kcal Electronic energy + Delta-G solvation = -23714.401923 eV Core-core repulsion = 20155.476063 eV Total energy + Delta-G solvation = -3558.925860 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.65697 -39.26140 -38.03821 -36.70157 -34.31092 -33.37998 -32.34355 -30.64854 -29.93911 -27.88643 -26.34177 -25.24601 -23.07931 -22.98263 -22.34273 -21.78166 -20.83750 -20.22657 -19.63647 -18.24861 -17.06766 -16.47065 -16.03354 -15.89802 -15.45004 -15.22664 -14.88034 -14.54137 -14.38771 -14.07842 -13.72139 -13.57349 -13.42244 -13.04516 -12.94923 -12.56129 -12.30545 -12.20800 -12.12436 -11.99611 -11.32043 -11.06479 -11.02406 -10.86512 -10.70066 -10.64762 -10.52146 -10.36576 -10.06851 -9.88814 -9.81947 -9.62691 -9.09553 -8.84164 -8.77085 -6.88812 -5.73934 -3.02073 1.29959 1.92994 1.97321 3.15198 3.33846 3.45293 3.46922 3.51088 3.52276 3.80244 4.19142 4.30120 4.38790 4.46482 4.58170 4.62396 4.77566 4.86043 4.94733 5.05550 5.12588 5.19468 5.28497 5.30232 5.44579 5.49415 5.51060 5.60091 5.61103 5.88282 6.02309 6.06558 6.12452 6.18062 6.30939 6.44949 6.48650 6.58852 6.70381 6.82397 6.92117 7.23603 7.62834 7.73151 8.33744 8.45354 9.56486 10.14355 10.49169 11.49029 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.038787 B = 0.001899 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.709806 B =14744.137622 C =14996.041508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.129 3.871 15 N -0.721 5.721 16 C 0.592 3.408 17 O -0.555 6.555 18 C -0.290 4.290 19 C 0.082 3.918 20 N -0.294 5.294 21 N -0.359 5.359 22 C 0.162 3.838 23 C -0.172 4.172 24 C -0.177 4.177 25 C -0.168 4.168 26 C 0.127 3.873 27 H 0.053 0.947 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.399 0.601 37 H 0.190 0.810 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.201 1.462 31.479 31.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.005 3.995 15 N -0.371 5.371 16 C 0.379 3.621 17 O -0.434 6.434 18 C -0.305 4.305 19 C -0.106 4.106 20 N -0.114 5.114 21 N -0.138 5.138 22 C 0.042 3.958 23 C -0.191 4.191 24 C -0.214 4.214 25 C -0.206 4.206 26 C -0.024 4.024 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.207 0.793 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.138 0.862 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.232 1.500 32.357 32.393 hybrid contribution 0.171 -0.176 -1.588 1.607 sum 0.403 1.325 30.769 30.800 Atomic orbital electron populations 1.21794 0.94687 1.01944 1.01464 1.21554 0.96702 1.00520 0.94200 0.90522 1.20580 0.96611 0.94213 0.85392 1.42331 1.66939 1.27676 1.00571 1.19206 1.28671 1.05435 0.83709 0.91203 1.24728 1.01050 0.97424 0.97824 1.69641 1.43531 1.16618 1.28565 0.86256 0.78004 0.77686 0.84171 1.21294 1.21729 1.21291 1.21396 1.00118 0.95218 0.82739 1.45818 1.57830 1.27836 1.05644 1.17209 0.78649 0.83967 0.82230 1.90765 1.41171 1.24608 1.86846 1.20307 1.15056 1.01536 0.93606 1.24115 0.96614 0.94482 0.95409 1.77147 1.19373 1.13131 1.01735 1.48479 1.40898 1.17606 1.06790 1.21396 1.02876 0.97672 0.73889 1.22565 1.01581 0.98964 0.96009 1.23139 0.90934 1.03614 1.03752 1.22993 1.01378 1.03240 0.92991 1.22967 0.95355 0.93945 0.90158 0.92832 0.93864 0.91198 0.96126 0.95995 0.78205 0.93511 0.91352 0.91344 0.76678 0.79280 0.88786 0.88130 0.86249 0.88415 0.88408 0.88197 0.88338 0.79613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 2 C -0.11 -1.71 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.39 5.33 -59.91 -0.32 -18.71 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 10 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 C 0.13 1.81 5.06 -4.05 -0.02 1.79 16 15 N -0.72 -8.79 5.28 -61.39 -0.32 -9.12 16 16 C 0.59 8.00 7.81 -12.52 -0.10 7.90 16 17 O -0.55 -9.39 16.90 5.28 0.09 -9.31 16 18 C -0.29 -3.21 6.13 -105.06 -0.64 -3.86 16 19 C 0.08 0.80 11.50 -16.98 -0.20 0.60 16 20 N -0.29 -3.07 12.14 30.86 0.37 -2.69 16 21 N -0.36 -3.09 3.65 -60.81 -0.22 -3.31 16 22 C 0.16 0.86 6.77 -4.04 -0.03 0.83 16 23 C -0.17 -0.97 5.92 -90.62 -0.54 -1.50 16 24 C -0.18 -0.82 10.18 -26.70 -0.27 -1.09 16 25 C -0.17 -0.67 10.25 -26.70 -0.27 -0.94 16 26 C 0.13 1.19 11.25 -16.56 -0.19 1.00 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 29 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 30 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.38 10.03 6.85 -40.82 -0.28 9.75 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 3.93 6.61 -40.82 -0.27 3.66 16 37 H 0.19 1.32 7.50 -52.49 -0.39 0.92 16 38 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.10 0.29 7.79 -51.93 -0.40 -0.11 16 40 H 0.12 0.92 7.90 -51.92 -0.41 0.51 16 41 H 0.10 0.36 8.03 -51.93 -0.42 -0.06 16 42 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 379.32 15.07 5.72 5.72 Total: -1.00 -34.76 379.32 -8.51 -43.27 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.12 Total: 7.31 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.41 Total: -3.19 kcal Atomic # 7 Polarization: -61.58 SS G_CDS: 0.23 Total: -61.34 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.76 -8.51 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.168 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds