Wall clock time and date at job start Tue Mar 31 2020 09:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.36943 * 119.99752 * 179.72430 * 5 4 2 7 7 H 1.08002 * 119.99793 * 0.27665 * 6 5 4 8 8 C 1.38811 * 120.00012 * 180.27737 * 6 5 4 9 9 N 1.31624 * 119.99698 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00072 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47213 * 60.00246 * 10 8 6 12 12 H 1.48502 * 109.47317 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47081 * 299.99875 * 10 8 6 14 14 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 15 15 N 1.46500 * 109.47129 * 65.00299 * 14 2 1 16 16 C 1.34771 * 120.00026 * 179.97438 * 15 14 2 17 17 O 1.21609 * 120.00054 * 359.97438 * 16 15 14 18 18 C 1.47431 * 120.00397 * 179.97438 * 16 15 14 19 19 C 1.41290 * 126.40838 * 359.69127 * 18 16 15 20 20 N 1.30451 * 108.02193 * 179.87736 * 19 18 16 21 21 N 1.39937 * 108.89425 * 0.38362 * 20 19 18 22 22 C 1.46506 * 125.75766 * 179.73513 * 21 20 19 23 23 C 1.53000 * 109.46437 * 305.02239 * 22 21 20 24 24 C 1.52998 * 117.49868 * 243.74324 * 23 22 21 25 25 C 1.53000 * 117.49664 * 175.08462 * 23 22 21 26 26 C 1.34263 * 108.49287 * 359.74887 * 21 20 19 27 27 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 29 29 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 30 30 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 31 31 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 32 32 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 33 33 H 0.96999 * 119.99739 * 180.02562 * 9 8 6 34 34 H 1.09005 * 109.46502 * 184.99774 * 14 2 1 35 35 H 1.08996 * 109.47343 * 304.99842 * 14 2 1 36 36 H 0.97004 * 120.00029 * 359.97438 * 15 14 2 37 37 H 1.07998 * 125.99457 * 359.97438 * 19 18 16 38 38 H 1.09000 * 109.46876 * 65.01972 * 22 21 20 39 39 H 1.08995 * 109.47267 * 185.02405 * 22 21 20 40 40 H 1.09002 * 115.55756 * 29.41840 * 23 22 21 41 41 H 1.08998 * 117.49921 * 0.02562 * 24 23 22 42 42 H 1.09003 * 117.49912 * 145.02192 * 24 23 22 43 43 H 1.09001 * 117.50180 * 214.97859 * 25 23 22 44 44 H 1.09006 * 117.49772 * 359.97438 * 25 23 22 45 45 H 1.08000 * 126.29008 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9967 -0.4236 3.6858 7 1 2.5577 -1.3410 3.7866 8 6 1.6245 0.2903 4.8166 9 7 0.9404 1.4080 4.6937 10 14 2.0946 -0.3353 6.5128 11 1 3.5734 -0.4243 6.6153 12 1 1.5818 0.6007 7.5453 13 1 1.5018 -1.6800 6.7262 14 6 2.0400 -0.7213 -1.2493 15 7 1.6525 0.0354 -2.4424 16 6 1.9964 -0.4129 -3.6659 17 8 2.6289 -1.4454 -3.7796 18 6 1.6060 0.3482 -4.8667 19 6 0.8697 1.5538 -4.8927 20 7 0.7302 1.9147 -6.1385 21 7 1.3536 0.9666 -6.9575 22 6 1.4147 1.0070 -8.4207 23 6 -0.0023 1.1165 -8.9873 24 6 -0.5125 -0.0446 -9.8431 25 6 -0.1466 1.2884 -10.5007 26 6 1.8862 0.0134 -6.1762 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.1264 -0.7995 1.2056 31 1 1.6054 -1.7198 1.2950 32 1 1.1483 0.8591 2.3518 33 1 0.6807 1.9070 5.4838 34 1 3.1264 -0.7994 -1.2056 35 1 1.6054 -1.7198 -1.2953 36 1 1.1483 0.8592 -2.3518 37 1 0.4903 2.0845 -4.0321 38 1 1.9999 1.8708 -8.7362 39 1 1.8843 0.0954 -8.7901 40 1 -0.7247 1.6284 -8.3515 41 1 0.1611 -0.8866 -10.0022 42 1 -1.5706 -0.2963 -9.7707 43 1 -0.9641 1.9131 -10.8606 44 1 0.7680 1.3240 -11.0927 45 1 2.4329 -0.8558 -6.5109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753637784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:40 Heat of formation + Delta-G solvation = 66.905396 kcal Electronic energy + Delta-G solvation = -23717.874096 eV Core-core repulsion = 20158.948592 eV Total energy + Delta-G solvation = -3558.925504 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.65611 -39.26030 -38.03956 -36.70105 -34.31071 -33.37989 -32.34317 -30.64827 -29.93816 -27.88675 -26.34223 -25.24598 -23.07937 -22.98586 -22.34345 -21.78144 -20.83829 -20.22722 -19.63580 -18.24937 -17.06744 -16.48262 -15.99129 -15.89605 -15.53752 -15.16923 -14.86890 -14.56589 -14.39794 -14.03337 -13.74202 -13.62537 -13.36239 -13.05429 -12.96032 -12.55379 -12.30966 -12.21216 -12.12655 -11.99126 -11.32249 -11.06718 -11.02302 -10.86517 -10.70074 -10.64910 -10.52205 -10.36591 -10.06820 -9.88797 -9.81919 -9.62668 -9.09570 -8.84129 -8.77122 -6.88752 -5.73934 -3.02085 1.29983 1.92717 1.97507 3.14982 3.33831 3.45256 3.46953 3.51092 3.52277 3.80102 4.18987 4.29925 4.38675 4.46397 4.58129 4.62412 4.77457 4.86051 4.94717 5.05320 5.12561 5.19428 5.28474 5.29922 5.44543 5.49395 5.50761 5.59872 5.61115 5.88232 6.02306 6.06520 6.12416 6.18020 6.30876 6.44989 6.48645 6.58797 6.70343 6.82432 6.92102 7.23569 7.62820 7.73109 8.33720 8.45410 9.56496 10.14349 10.49163 11.49022 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.043144 B = 0.001894 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.828950 B =14778.805999 C =15102.684294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 H 0.076 0.924 4 C 0.160 3.840 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.015 4.015 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.129 3.871 15 N -0.721 5.721 16 C 0.592 3.408 17 O -0.555 6.555 18 C -0.290 4.290 19 C 0.082 3.918 20 N -0.294 5.294 21 N -0.359 5.359 22 C 0.162 3.838 23 C -0.172 4.172 24 C -0.178 4.178 25 C -0.168 4.168 26 C 0.127 3.873 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.042 0.958 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.384 0.616 33 H 0.255 0.745 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.399 0.601 37 H 0.190 0.810 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.758 0.273 -31.596 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.130 4.130 3 H 0.095 0.905 4 C 0.032 3.968 5 N -0.375 5.375 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.213 1.213 12 H -0.217 1.217 13 H -0.213 1.213 14 C 0.005 3.995 15 N -0.371 5.371 16 C 0.379 3.621 17 O -0.434 6.434 18 C -0.305 4.305 19 C -0.106 4.106 20 N -0.114 5.114 21 N -0.138 5.138 22 C 0.042 3.958 23 C -0.191 4.191 24 C -0.214 4.214 25 C -0.206 4.206 26 C -0.024 4.024 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.218 0.782 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.207 0.793 38 H 0.112 0.888 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -1.709 0.323 -32.473 32.520 hybrid contribution 0.118 -0.207 1.586 1.604 sum -1.591 0.116 -30.887 30.928 Atomic orbital electron populations 1.21793 0.94692 1.01941 1.01462 1.21554 0.96695 1.00525 0.94200 0.90515 1.20578 0.96624 0.94201 0.85394 1.42332 1.67047 1.27585 1.00552 1.19207 1.28663 1.05462 0.83684 0.91206 1.24730 1.01039 0.97444 0.97822 1.69649 1.43483 1.16677 1.28549 0.86253 0.77990 0.77694 0.84167 1.21287 1.21729 1.21298 1.21399 1.00123 0.95213 0.82738 1.45815 1.57785 1.27870 1.05648 1.17210 0.78660 0.83957 0.82230 1.90768 1.41162 1.24620 1.86849 1.20304 1.14935 1.01652 0.93608 1.24116 0.96523 0.94576 0.95410 1.77149 1.19302 1.13192 1.01739 1.48481 1.41116 1.17444 1.06741 1.21396 0.96674 1.04225 0.73541 1.22563 0.97480 1.04620 0.94435 1.23138 1.02563 0.92146 1.03596 1.22994 1.03761 1.00231 0.93613 1.22967 0.95584 0.93705 0.90169 0.92834 0.91199 0.93868 0.96113 0.96005 0.78205 0.93517 0.91345 0.91346 0.76675 0.79281 0.88793 0.88127 0.86252 0.88414 0.88420 0.88196 0.88335 0.79612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.94 37.16 0.33 -1.77 16 2 C -0.11 -1.71 2.46 -90.62 -0.22 -1.94 16 3 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 4 C 0.16 3.20 5.65 -4.04 -0.02 3.18 16 5 N -0.73 -18.39 5.33 -59.91 -0.32 -18.71 16 6 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 9 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 10 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 C 0.13 1.81 5.06 -4.04 -0.02 1.79 16 15 N -0.72 -8.79 5.28 -61.38 -0.32 -9.11 16 16 C 0.59 8.00 7.81 -12.52 -0.10 7.90 16 17 O -0.55 -9.40 16.90 5.27 0.09 -9.31 16 18 C -0.29 -3.21 6.13 -105.07 -0.64 -3.86 16 19 C 0.08 0.80 11.50 -16.98 -0.20 0.60 16 20 N -0.29 -3.07 12.14 30.86 0.37 -2.69 16 21 N -0.36 -3.09 3.65 -60.81 -0.22 -3.31 16 22 C 0.16 0.85 6.77 -4.04 -0.03 0.83 16 23 C -0.17 -0.96 5.92 -90.62 -0.54 -1.49 16 24 C -0.18 -0.81 10.18 -26.70 -0.27 -1.08 16 25 C -0.17 -0.66 10.25 -26.69 -0.27 -0.94 16 26 C 0.13 1.19 11.25 -16.56 -0.19 1.00 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 29 H 0.04 0.51 7.18 -51.93 -0.37 0.14 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.38 10.03 6.85 -40.82 -0.28 9.75 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.40 3.93 6.61 -40.82 -0.27 3.66 16 37 H 0.19 1.32 7.50 -52.49 -0.39 0.92 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.10 0.29 7.79 -51.93 -0.40 -0.11 16 40 H 0.12 0.91 7.90 -51.93 -0.41 0.50 16 41 H 0.10 0.35 8.03 -51.93 -0.42 -0.06 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -34.76 379.31 -8.51 -43.27 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -7.12 Total: 7.29 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -2.41 Total: -3.17 kcal Atomic # 7 Polarization: -61.57 SS G_CDS: 0.23 Total: -61.34 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.09 Total: -9.31 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.76 -8.51 -43.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753637784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.176 kcal (2) G-P(sol) polarization free energy of solvation -34.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds