Wall clock time and date at job start Tue Mar 31 2020 09:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47058 * 240.00464 * 2 1 3 5 5 N 1.46501 * 109.47167 * 184.99990 * 4 2 1 6 6 C 1.36940 * 119.99946 * 179.97438 * 5 4 2 7 7 H 1.08000 * 119.99792 * 0.02562 * 6 5 4 8 8 C 1.38807 * 119.99725 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00210 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99712 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47119 * 90.00193 * 10 8 6 12 12 H 1.48500 * 109.47000 * 210.00081 * 10 8 6 13 13 H 1.48498 * 109.47259 * 330.00050 * 10 8 6 14 14 N 1.46493 * 109.47142 * 120.00166 * 2 1 3 15 15 C 1.46501 * 120.00290 * 60.00138 * 14 2 1 16 16 C 1.34773 * 120.00118 * 239.99822 * 14 2 1 17 17 O 1.21629 * 120.00045 * 3.39722 * 16 14 2 18 18 C 1.47331 * 120.00298 * 183.39802 * 16 14 2 19 19 C 1.36571 * 126.21277 * 173.47758 * 18 16 14 20 20 N 1.34870 * 106.78357 * 179.97438 * 19 18 16 21 21 C 1.36301 * 107.86484 * 0.06251 * 20 19 18 22 22 N 1.29795 * 108.92337 * 359.92105 * 21 20 19 23 23 C 1.51103 * 123.90450 * 179.90294 * 21 20 19 24 24 C 1.53388 * 108.22827 * 344.00475 * 23 21 20 25 25 C 1.53266 * 109.18599 * 48.95851 * 24 23 21 26 26 C 1.46581 * 127.49797 * 180.10443 * 20 19 18 27 27 H 1.08999 * 109.47229 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47161 * 299.99549 * 1 2 3 29 29 H 1.08997 * 109.47504 * 59.99676 * 1 2 3 30 30 H 1.09001 * 109.47145 * 304.99703 * 4 2 1 31 31 H 1.09002 * 109.47304 * 64.99983 * 4 2 1 32 32 H 0.96994 * 119.99903 * 0.02562 * 5 4 2 33 33 H 0.97003 * 119.99728 * 179.97438 * 9 8 6 34 34 H 1.08997 * 109.47079 * 264.10108 * 15 14 2 35 35 H 1.09007 * 109.46959 * 24.09450 * 15 14 2 36 36 H 1.08994 * 109.47811 * 144.09577 * 15 14 2 37 37 H 1.07995 * 126.60296 * 359.93500 * 19 18 16 38 38 H 1.08999 * 109.71737 * 103.70503 * 23 21 20 39 39 H 1.09002 * 109.71668 * 224.30588 * 23 21 20 40 40 H 1.08999 * 109.50719 * 168.90984 * 24 23 21 41 41 H 1.08996 * 109.50626 * 289.04129 * 24 23 21 42 42 H 1.08993 * 109.44339 * 170.19387 * 25 24 23 43 43 H 1.08995 * 109.48491 * 50.22746 * 25 24 23 44 44 H 1.09001 * 109.58757 * 282.55814 * 26 20 19 45 45 H 1.08993 * 109.58411 * 42.97862 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.1838 -1.4387 -2.2069 7 1 3.6466 -1.8438 -3.0518 8 6 5.5672 -1.5378 -2.1515 9 7 6.2218 -1.0437 -1.1221 10 14 6.4999 -2.3726 -3.5382 11 1 6.8616 -1.3656 -4.5679 12 1 7.7356 -2.9951 -2.9990 13 1 5.6440 -3.4207 -4.1498 14 7 2.0183 -0.6906 1.1961 15 6 1.6645 -2.0932 1.4279 16 6 2.7932 -0.0357 2.0832 17 8 3.0362 1.1453 1.9231 18 6 3.3459 -0.7502 3.2471 19 6 4.2399 -0.2506 4.1506 20 7 4.4759 -1.2299 5.0473 21 6 3.7317 -2.3139 4.6883 22 7 3.0587 -2.0260 3.6164 23 6 3.7243 -3.6202 5.4476 24 6 4.9423 -3.6402 6.3798 25 6 4.9993 -2.3237 7.1624 26 6 5.3642 -1.1781 6.2122 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6054 -1.7197 -1.2953 31 1 1.7516 -0.1581 -2.1370 32 1 3.9823 -0.4628 -0.4317 33 1 7.1885 -1.1133 -1.0833 34 1 0.7975 -2.1451 2.0865 35 1 1.4273 -2.5701 0.4768 36 1 2.5051 -2.6081 1.8928 37 1 4.6746 0.7381 4.1472 38 1 2.8098 -3.6987 6.0355 39 1 3.7836 -4.4532 4.7470 40 1 4.8546 -4.4747 7.0755 41 1 5.8512 -3.7523 5.7887 42 1 5.7532 -2.3997 7.9459 43 1 4.0266 -2.1260 7.6126 44 1 6.3990 -1.2881 5.8878 45 1 5.2393 -0.2243 6.7247 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753695411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:59 Heat of formation + Delta-G solvation = 43.463588 kcal Electronic energy + Delta-G solvation = -26059.848529 eV Core-core repulsion = 22499.906512 eV Total energy + Delta-G solvation = -3559.942017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.29420 -39.18302 -36.69224 -36.01449 -33.87104 -33.39200 -31.72176 -30.13952 -29.54678 -28.60254 -26.21812 -25.52215 -24.82170 -23.13278 -22.35080 -22.27080 -20.21215 -19.17115 -18.56535 -17.14447 -16.92312 -16.31912 -16.05811 -15.56845 -14.88129 -14.60532 -14.52505 -14.23231 -13.97461 -13.78497 -13.66173 -13.42371 -13.10275 -13.01604 -12.47912 -12.15490 -12.10518 -11.95796 -11.81187 -11.64040 -11.48460 -11.41432 -11.30585 -11.24652 -10.76966 -10.64216 -10.31608 -9.95679 -9.78669 -9.59277 -9.55268 -9.26806 -8.75299 -8.30318 -7.86749 -6.76410 -5.61796 -2.90237 1.88933 2.62167 2.65591 3.50431 3.54715 3.56786 3.62010 4.05295 4.08752 4.26461 4.33730 4.38260 4.69454 4.84910 4.96096 5.05773 5.09142 5.20563 5.32328 5.39667 5.46955 5.52459 5.61409 5.64237 5.68813 5.77258 5.79494 5.82613 5.95458 6.16476 6.20499 6.21540 6.29553 6.35476 6.48820 6.56037 6.70032 6.82874 6.93812 7.10184 7.35304 7.80411 7.95473 8.12097 8.55701 8.84683 9.66935 10.28018 10.63561 11.60497 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.012311 B = 0.004586 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.804121 B = 6104.228523 C = 7402.344800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.125 3.875 3 H 0.099 0.901 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.236 4.236 7 H 0.069 0.931 8 C -0.015 4.015 9 N -0.929 5.929 10 Si 0.905 3.095 11 H -0.291 1.291 12 H -0.293 1.293 13 H -0.283 1.283 14 N -0.582 5.582 15 C 0.085 3.915 16 C 0.605 3.395 17 O -0.552 6.552 18 C -0.046 4.046 19 C 0.034 3.966 20 N -0.455 5.455 21 C 0.200 3.800 22 N -0.448 5.448 23 C -0.032 4.032 24 C -0.127 4.127 25 C -0.134 4.134 26 C 0.101 3.899 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.021 0.979 31 H 0.027 0.973 32 H 0.386 0.614 33 H 0.252 0.748 34 H 0.041 0.959 35 H 0.061 0.939 36 H 0.101 0.899 37 H 0.186 0.814 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 -4.039 19.943 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.022 3.978 3 H 0.117 0.883 4 C 0.015 3.985 5 N -0.371 5.371 6 C -0.367 4.367 7 H 0.087 0.913 8 C -0.210 4.210 9 N -0.578 5.578 10 Si 0.736 3.264 11 H -0.218 1.218 12 H -0.220 1.220 13 H -0.208 1.208 14 N -0.312 5.312 15 C -0.058 4.058 16 C 0.393 3.607 17 O -0.430 6.430 18 C -0.174 4.174 19 C -0.104 4.104 20 N -0.138 5.138 21 C -0.063 4.063 22 N -0.168 5.168 23 C -0.070 4.070 24 C -0.165 4.165 25 C -0.171 4.171 26 C -0.021 4.021 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.045 0.955 32 H 0.221 0.779 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.119 0.881 37 H 0.203 0.797 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.539 -4.012 19.373 20.837 hybrid contribution 1.423 0.173 -0.232 1.452 sum -5.116 -3.840 19.142 20.182 Atomic orbital electron populations 1.22037 0.95277 1.02016 1.01791 1.21385 0.93259 0.98446 0.84757 0.88334 1.21007 0.87071 0.96773 0.93605 1.42303 0.99748 1.70020 1.25061 1.19224 0.89431 1.29110 0.98975 0.91322 1.24730 0.96436 1.01887 0.97988 1.69711 1.06887 1.51064 1.30160 0.86218 0.79514 0.79017 0.81623 1.21829 1.21960 1.20846 1.47416 1.49466 1.12765 1.21590 1.22004 1.01913 0.81315 1.00581 1.16861 0.77602 0.85401 0.80826 1.90753 1.60791 1.15300 1.76178 1.20573 1.04549 0.92348 0.99980 1.22368 1.01229 0.95334 0.91455 1.45245 1.34552 1.11966 1.22008 1.23592 0.95485 0.91618 0.95630 1.70559 1.23309 1.12893 1.10025 1.20196 0.99192 0.90767 0.96885 1.21710 0.98745 0.97500 0.98540 1.21907 1.03458 0.93990 0.97777 1.22057 0.93923 1.01100 0.85031 0.92425 0.92751 0.91590 0.96160 0.95505 0.77931 0.93786 0.93999 0.91986 0.88087 0.79677 0.89356 0.88495 0.89966 0.90885 0.89300 0.90602 0.89405 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.19 37.16 0.34 -1.94 16 2 C 0.12 2.44 2.79 -67.94 -0.19 2.25 16 3 H 0.10 2.13 6.90 -51.93 -0.36 1.77 16 4 C 0.14 3.19 5.52 -4.04 -0.02 3.17 16 5 N -0.73 -20.20 5.43 -59.91 -0.33 -20.52 16 6 C -0.24 -7.03 9.99 -15.06 -0.15 -7.18 16 7 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 8 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 9 N -0.93 -29.96 13.06 55.49 0.72 -29.23 16 10 Si 0.90 23.45 29.55 -169.99 -5.02 18.43 16 11 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 12 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 13 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 14 N -0.58 -11.65 2.24 -175.24 -0.39 -12.04 16 15 C 0.08 1.52 8.62 59.85 0.52 2.03 16 16 C 0.61 13.05 7.37 -12.56 -0.09 12.95 16 17 O -0.55 -13.18 16.22 5.25 0.09 -13.09 16 18 C -0.05 -0.87 6.66 -82.97 -0.55 -1.42 16 19 C 0.03 0.55 11.33 -16.82 -0.19 0.36 16 20 N -0.45 -5.80 3.11 -113.42 -0.35 -6.16 16 21 C 0.20 2.74 7.64 -154.64 -1.18 1.56 16 22 N -0.45 -7.68 7.78 -7.01 -0.05 -7.73 16 23 C -0.03 -0.29 6.33 -27.48 -0.17 -0.46 16 24 C -0.13 -0.82 5.96 -26.39 -0.16 -0.98 16 25 C -0.13 -0.75 5.94 -26.47 -0.16 -0.91 16 26 C 0.10 0.79 6.96 -3.87 -0.03 0.77 16 27 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.39 11.69 7.06 -40.82 -0.29 11.40 16 33 H 0.25 7.83 8.31 -40.82 -0.34 7.49 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 1.10 6.54 -51.92 -0.34 0.76 16 36 H 0.10 1.96 5.30 -51.93 -0.28 1.68 16 37 H 0.19 2.65 8.06 -52.49 -0.42 2.23 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.08 0.43 8.11 -51.93 -0.42 0.01 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -37.53 360.72 -9.09 -46.63 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.06 Total: 8.64 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: -2.13 Total: 9.65 kcal Atomic # 7 Polarization: -75.29 SS G_CDS: -0.40 Total: -75.69 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.53 -9.09 -46.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753695411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.089 kcal (2) G-P(sol) polarization free energy of solvation -37.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds