Wall clock time and date at job start Tue Mar 31 2020 09:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.47477 * 2 1 4 4 C 1.53003 * 109.47103 * 120.00681 * 2 1 3 5 5 N 1.46494 * 109.46944 * 174.99862 * 4 2 1 6 6 C 1.36934 * 119.99949 * 180.02562 * 5 4 2 7 7 H 1.08002 * 120.00210 * 359.97438 * 6 5 4 8 8 C 1.38809 * 120.00366 * 180.02562 * 6 5 4 9 9 N 1.31617 * 120.00607 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99871 * 359.97438 * 8 6 5 11 11 H 1.48508 * 109.46832 * 90.00413 * 10 8 6 12 12 H 1.48494 * 109.47625 * 210.00079 * 10 8 6 13 13 H 1.48494 * 109.47426 * 330.00886 * 10 8 6 14 14 N 1.46500 * 109.46513 * 240.00382 * 2 1 3 15 15 C 1.46504 * 120.00314 * 299.99960 * 14 2 1 16 16 C 1.34782 * 120.00098 * 120.00623 * 14 2 1 17 17 O 1.21621 * 119.99388 * 3.38134 * 16 14 2 18 18 C 1.47318 * 120.00165 * 183.38478 * 16 14 2 19 19 C 1.36576 * 126.21176 * 173.47322 * 18 16 14 20 20 N 1.34867 * 106.78996 * 179.97438 * 19 18 16 21 21 C 1.36310 * 107.85750 * 0.05567 * 20 19 18 22 22 N 1.29794 * 108.92718 * 359.92849 * 21 20 19 23 23 C 1.51109 * 123.90363 * 179.97438 * 21 20 19 24 24 C 1.53387 * 108.22437 * 344.01403 * 23 21 20 25 25 C 1.53232 * 109.20388 * 48.94115 * 24 23 21 26 26 C 1.46575 * 127.50450 * 180.12501 * 20 19 18 27 27 H 1.09000 * 109.46900 * 59.99233 * 1 2 3 28 28 H 1.08996 * 109.47431 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47012 * 299.99814 * 1 2 3 30 30 H 1.09001 * 109.46913 * 294.99377 * 4 2 1 31 31 H 1.08998 * 109.46971 * 54.99801 * 4 2 1 32 32 H 0.97001 * 119.99972 * 359.97438 * 5 4 2 33 33 H 0.96994 * 120.00379 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.46978 * 264.09993 * 15 14 2 35 35 H 1.09002 * 109.46708 * 24.09929 * 15 14 2 36 36 H 1.08991 * 109.47136 * 144.10006 * 15 14 2 37 37 H 1.07997 * 126.60304 * 359.91185 * 19 18 16 38 38 H 1.08990 * 109.71906 * 103.70777 * 23 21 20 39 39 H 1.09004 * 109.71880 * 224.32583 * 23 21 20 40 40 H 1.09000 * 109.50628 * 168.90738 * 24 23 21 41 41 H 1.09001 * 109.51082 * 289.04498 * 24 23 21 42 42 H 1.09005 * 109.44486 * 170.19954 * 25 24 23 43 43 H 1.08996 * 109.45434 * 50.25308 * 25 24 23 44 44 H 1.09005 * 109.58237 * 282.54848 * 26 20 19 45 45 H 1.08993 * 109.58621 * 42.96879 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8265 1.1904 6 6 4.1838 -1.4391 2.2065 7 1 3.6468 -1.8444 3.0513 8 6 5.5672 -1.5383 2.1512 9 7 6.2245 -2.1266 3.1280 10 14 6.4962 -0.8367 0.6903 11 1 6.8570 0.5773 0.9658 12 1 7.7323 -1.6277 0.4634 13 1 5.6379 -0.9017 -0.5198 14 7 2.0182 -0.6906 -1.1963 15 6 1.6642 -2.0931 -1.4282 16 6 2.7932 -0.0356 -2.0834 17 8 3.1379 1.1093 -1.8607 18 6 3.2225 -0.7064 -3.3228 19 6 3.8978 -0.1294 -4.3603 20 7 4.0898 -1.0930 -5.2841 21 6 3.5339 -2.2436 -4.8096 22 7 3.0185 -2.0116 -3.6412 23 6 3.5420 -3.5554 -5.5597 24 6 3.8893 -3.2675 -7.0258 25 6 5.1290 -2.3687 -7.0830 26 6 4.7696 -0.9674 -6.5765 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.7518 -0.1585 2.1370 31 1 1.6054 -1.7199 1.2950 32 1 3.9823 -0.4629 0.4315 33 1 7.1912 -2.1963 3.0891 34 1 2.4665 -2.7352 -1.0647 35 1 0.7420 -2.3277 -0.8967 36 1 1.5209 -2.2599 -2.4957 37 1 4.2157 0.9005 -4.4282 38 1 4.2897 -4.2209 -5.1285 39 1 2.5577 -4.0197 -5.4993 40 1 4.0943 -4.2053 -7.5421 41 1 3.0512 -2.7625 -7.5060 42 1 5.4825 -2.3032 -8.1120 43 1 5.9136 -2.7921 -6.4559 44 1 4.1081 -0.4777 -7.2912 45 1 5.6793 -0.3795 -6.4552 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753695412.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:03 Heat of formation + Delta-G solvation = 46.882304 kcal Electronic energy + Delta-G solvation = -26185.206308 eV Core-core repulsion = 22625.412538 eV Total energy + Delta-G solvation = -3559.793770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.49093 -39.39363 -36.85113 -36.21070 -34.04992 -33.55184 -31.83487 -30.52828 -29.77633 -28.78725 -26.41525 -25.79225 -24.99095 -23.26245 -22.50481 -21.90155 -20.40717 -19.33876 -18.80137 -17.42127 -17.29864 -16.51619 -16.23291 -15.72002 -15.04794 -14.68856 -14.53693 -14.39591 -14.16801 -13.93464 -13.82617 -13.75664 -13.18483 -12.74722 -12.63032 -12.42221 -12.29503 -12.19445 -11.94684 -11.77633 -11.62973 -11.60570 -11.53741 -11.39621 -10.81624 -10.68970 -10.40301 -9.99962 -9.94578 -9.77376 -9.48254 -9.46892 -8.76898 -8.50923 -8.04582 -7.07533 -5.65373 -2.98257 1.66683 2.43175 2.46711 3.44525 3.50660 3.55635 3.61518 3.79716 3.94447 4.12275 4.19829 4.24249 4.67206 4.73432 4.79204 4.91429 4.94017 5.00367 5.20171 5.25885 5.29555 5.41497 5.43450 5.47952 5.60486 5.61020 5.67892 5.69770 5.73675 5.98896 6.01515 6.07248 6.11955 6.17549 6.39088 6.44975 6.54773 6.63384 6.80721 6.91559 7.16019 7.75883 7.92209 8.12093 8.54185 8.62912 9.35628 10.09177 10.30397 11.53232 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.004906 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.100586 B = 5706.005432 C = 6751.464810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.120 3.880 3 H 0.099 0.901 4 C 0.150 3.850 5 N -0.752 5.752 6 C -0.237 4.237 7 H 0.090 0.910 8 C 0.005 3.995 9 N -0.937 5.937 10 Si 0.880 3.120 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.276 1.276 14 N -0.584 5.584 15 C 0.080 3.920 16 C 0.600 3.400 17 O -0.553 6.553 18 C -0.051 4.051 19 C 0.031 3.969 20 N -0.455 5.455 21 C 0.203 3.797 22 N -0.447 5.447 23 C -0.034 4.034 24 C -0.125 4.125 25 C -0.137 4.137 26 C 0.101 3.899 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.036 0.964 31 H 0.029 0.971 32 H 0.364 0.636 33 H 0.257 0.743 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.187 0.813 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.426 -1.041 -25.696 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.117 0.883 4 C 0.022 3.978 5 N -0.397 5.397 6 C -0.367 4.367 7 H 0.108 0.892 8 C -0.190 4.190 9 N -0.586 5.586 10 Si 0.710 3.290 11 H -0.211 1.211 12 H -0.220 1.220 13 H -0.203 1.203 14 N -0.315 5.315 15 C -0.063 4.063 16 C 0.388 3.612 17 O -0.431 6.431 18 C -0.179 4.179 19 C -0.108 4.108 20 N -0.138 5.138 21 C -0.060 4.060 22 N -0.167 5.167 23 C -0.072 4.072 24 C -0.163 4.163 25 C -0.174 4.174 26 C -0.020 4.020 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.046 0.954 32 H 0.197 0.803 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.115 0.885 37 H 0.204 0.796 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.558 -1.107 -24.956 26.406 hybrid contribution 1.368 1.020 -1.357 2.180 sum -7.190 -0.087 -26.313 27.278 Atomic orbital electron populations 1.22047 0.94883 1.02257 1.02028 1.21474 0.93629 0.98433 0.84740 0.88262 1.20971 0.85728 0.97383 0.93745 1.42658 1.01365 1.71241 1.24464 1.19064 0.89833 1.28966 0.98814 0.89225 1.24590 0.96143 1.00756 0.97491 1.69701 1.07138 1.49079 1.32641 0.86585 0.79603 0.78864 0.83909 1.21098 1.22005 1.20255 1.47523 1.49527 1.12924 1.21501 1.22097 1.00081 0.80640 1.03470 1.16919 0.77886 0.84875 0.81554 1.90760 1.57165 1.17942 1.77257 1.20616 1.08713 0.91135 0.97480 1.22376 1.02886 0.95687 0.89828 1.45299 1.42887 1.09550 1.16055 1.23669 0.99647 0.89950 0.92751 1.70587 1.20719 1.14405 1.10966 1.20238 1.04445 0.89876 0.92680 1.21693 0.97767 1.00723 0.96095 1.21933 0.99181 0.93546 1.02761 1.22075 0.97942 0.99640 0.82390 0.92661 0.92150 0.91275 0.94630 0.95365 0.80261 0.93257 0.92292 0.92334 0.88496 0.79638 0.88985 0.88458 0.89822 0.91105 0.89160 0.90347 0.89465 0.88917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.18 37.16 0.34 -1.77 16 2 C 0.12 2.21 2.79 -67.93 -0.19 2.02 16 3 H 0.10 1.99 6.90 -51.93 -0.36 1.63 16 4 C 0.15 3.19 5.56 -4.04 -0.02 3.17 16 5 N -0.75 -20.03 5.24 -59.91 -0.31 -20.35 16 6 C -0.24 -7.23 10.47 -15.06 -0.16 -7.39 16 7 H 0.09 2.86 8.06 -52.49 -0.42 2.44 16 8 C 0.01 0.17 5.50 -17.43 -0.10 0.08 16 9 N -0.94 -31.05 13.97 55.49 0.78 -30.27 16 10 Si 0.88 24.81 27.74 -169.99 -4.71 20.10 16 11 H -0.28 -8.02 7.11 56.52 0.40 -7.62 16 12 H -0.29 -8.17 7.11 56.52 0.40 -7.77 16 13 H -0.28 -7.81 6.52 56.52 0.37 -7.44 16 14 N -0.58 -11.04 2.24 -175.24 -0.39 -11.43 16 15 C 0.08 1.34 8.72 59.85 0.52 1.86 16 16 C 0.60 12.19 7.37 -12.57 -0.09 12.09 16 17 O -0.55 -12.50 16.22 5.26 0.09 -12.41 16 18 C -0.05 -0.90 6.66 -82.98 -0.55 -1.45 16 19 C 0.03 0.44 11.33 -16.82 -0.19 0.25 16 20 N -0.46 -5.19 3.11 -113.41 -0.35 -5.54 16 21 C 0.20 2.55 7.64 -154.63 -1.18 1.37 16 22 N -0.45 -7.19 7.78 -7.00 -0.05 -7.25 16 23 C -0.03 -0.27 6.33 -27.48 -0.17 -0.44 16 24 C -0.12 -0.63 5.96 -26.41 -0.16 -0.79 16 25 C -0.14 -0.68 5.94 -26.47 -0.16 -0.83 16 26 C 0.10 0.66 6.96 -3.86 -0.03 0.64 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.77 6.67 -51.93 -0.35 0.42 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.59 7.84 -51.93 -0.41 0.19 16 32 H 0.36 10.06 4.93 -40.82 -0.20 9.86 16 33 H 0.26 8.13 8.31 -40.82 -0.34 7.79 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.85 6.44 -51.93 -0.33 0.51 16 36 H 0.10 1.53 5.30 -51.93 -0.28 1.25 16 37 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 38 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 42 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 43 H 0.08 0.47 8.11 -51.93 -0.42 0.05 16 44 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -38.97 357.60 -8.72 -47.70 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -7.01 Total: 5.27 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -2.14 Total: 8.80 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -0.34 Total: -74.84 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.41 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -4.71 Total: 20.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -38.97 -8.72 -47.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753695412.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.578 kcal (2) G-P(sol) polarization free energy of solvation -38.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds