Wall clock time and date at job start Tue Mar 31 2020 09:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47712 * 2 1 4 4 C 1.53006 * 109.46756 * 119.99583 * 2 1 3 5 5 N 1.46497 * 109.47387 * 174.99951 * 4 2 1 6 6 C 1.36933 * 120.00225 * 179.97438 * 5 4 2 7 7 H 1.07994 * 120.00061 * 0.02562 * 6 5 4 8 8 C 1.38821 * 119.99916 * 179.97438 * 6 5 4 9 9 N 1.31619 * 119.99933 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99723 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47459 * 60.00275 * 10 8 6 12 12 H 1.48503 * 109.46996 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47438 * 299.99951 * 10 8 6 14 14 N 1.46502 * 109.47369 * 239.99272 * 2 1 3 15 15 C 1.46500 * 119.99841 * 300.00213 * 14 2 1 16 16 C 1.34768 * 119.99902 * 120.00378 * 14 2 1 17 17 O 1.21575 * 120.00164 * 5.32757 * 16 14 2 18 18 C 1.47715 * 120.00006 * 185.32678 * 16 14 2 19 19 N 1.32201 * 126.67651 * 5.42850 * 18 16 14 20 20 N 1.28841 * 110.15117 * 179.80493 * 19 18 16 21 21 H 0.97003 * 124.98361 * 180.09067 * 20 19 18 22 22 C 1.34313 * 110.04093 * 0.40188 * 20 19 18 23 23 C 1.35585 * 107.21842 * 359.82877 * 22 20 19 24 24 C 1.50370 * 124.62304 * 179.78336 * 23 22 20 25 25 C 1.53466 * 108.29186 * 343.77577 * 24 23 22 26 26 C 1.53114 * 109.51508 * 49.46669 * 25 24 23 27 27 C 1.50717 * 128.90543 * 179.87481 * 22 20 19 28 28 H 1.09003 * 109.47104 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47135 * 300.00640 * 1 2 3 30 30 H 1.09007 * 109.46324 * 60.00518 * 1 2 3 31 31 H 1.08999 * 109.47129 * 295.00029 * 4 2 1 32 32 H 1.09003 * 109.47024 * 54.99746 * 4 2 1 33 33 H 0.97003 * 119.99645 * 359.97438 * 5 4 2 34 34 H 0.97003 * 119.99826 * 179.97438 * 9 8 6 35 35 H 1.09004 * 109.46658 * 95.28794 * 15 14 2 36 36 H 1.08994 * 109.47247 * 215.28697 * 15 14 2 37 37 H 1.09002 * 109.47292 * 335.29157 * 15 14 2 38 38 H 1.09005 * 109.70130 * 103.45557 * 24 23 22 39 39 H 1.08996 * 109.70581 * 224.05355 * 24 23 22 40 40 H 1.08994 * 109.45378 * 289.45959 * 25 24 23 41 41 H 1.08994 * 109.47097 * 169.48038 * 25 24 23 42 42 H 1.08998 * 109.43944 * 169.90692 * 26 25 24 43 43 H 1.08998 * 109.44465 * 50.01092 * 26 25 24 44 44 H 1.08998 * 109.69135 * 283.01247 * 27 22 20 45 45 H 1.08998 * 109.68880 * 43.59489 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 3.4999 -0.8264 1.1908 6 6 4.1836 -1.4379 2.2075 7 1 3.6466 -1.8430 3.0524 8 6 5.5671 -1.5380 2.1518 9 7 6.2216 -1.0448 1.1219 10 14 6.4997 -2.3728 3.5384 11 1 6.0430 -3.7801 3.6652 12 1 7.9545 -2.3489 3.2412 13 1 6.2432 -1.6525 4.8114 14 7 2.0184 -0.6908 -1.1961 15 6 1.6644 -2.0934 -1.4277 16 6 2.7933 -0.0359 -2.0832 17 8 3.1670 1.0961 -1.8446 18 6 3.1885 -0.6935 -3.3455 19 7 2.7799 -1.8721 -3.7834 20 7 3.3215 -2.1343 -4.9227 21 1 3.1701 -2.9423 -5.4376 22 6 4.1317 -1.1279 -5.2898 23 6 4.0764 -0.1909 -4.3114 24 6 4.8422 1.1031 -4.3234 25 6 5.9587 0.9923 -5.3704 26 6 5.3745 0.4775 -6.6887 27 6 4.9712 -0.9945 -6.5343 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.7515 -0.1582 2.1370 32 1 1.6052 -1.7197 1.2953 33 1 3.9823 -0.4629 0.4318 34 1 7.1884 -1.1145 1.0831 35 1 0.7908 -2.1450 -2.0776 36 1 2.5012 -2.6056 -1.9025 37 1 1.4378 -2.5730 -0.4755 38 1 4.1736 1.9233 -4.5851 39 1 5.2767 1.2822 -3.3400 40 1 6.7213 0.2990 -5.0158 41 1 6.4059 1.9734 -5.5299 42 1 6.1221 0.5681 -7.4767 43 1 4.4971 1.0683 -6.9520 44 1 5.8645 -1.6123 -6.4427 45 1 4.3932 -1.3100 -7.4028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753699791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:44 Heat of formation + Delta-G solvation = 48.759999 kcal Electronic energy + Delta-G solvation = -26272.488884 eV Core-core repulsion = 22712.776537 eV Total energy + Delta-G solvation = -3559.712347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.69990 -39.25322 -36.92467 -36.15092 -33.87554 -32.67798 -31.57412 -30.02692 -29.88404 -29.23435 -26.42497 -25.56216 -24.06399 -23.72861 -22.42308 -22.13579 -20.30447 -19.00615 -18.55241 -17.66923 -16.96420 -16.53594 -15.86759 -15.63805 -14.87296 -14.63732 -14.34048 -13.84563 -13.75906 -13.57837 -13.38409 -13.13201 -13.05792 -12.97726 -12.55246 -12.19448 -12.14311 -12.11025 -11.88038 -11.73046 -11.35886 -10.94426 -10.80835 -10.76767 -10.68952 -10.61515 -10.45863 -10.27831 -9.98771 -9.59846 -9.46852 -9.10470 -8.77151 -8.49585 -8.04440 -6.79088 -5.63126 -2.92247 1.83209 2.26670 2.90164 3.47209 3.50082 3.53676 3.55201 3.87367 4.46122 4.60656 4.67572 4.77068 4.80200 5.17337 5.24865 5.28987 5.40346 5.46679 5.55165 5.55827 5.58548 5.64365 5.69459 5.78464 5.82826 5.92245 6.01030 6.07660 6.11816 6.15817 6.23295 6.30085 6.35183 6.39568 6.43997 6.50629 6.63462 6.70734 6.84980 7.05960 7.21309 7.78133 7.86600 8.03903 8.54163 8.71187 9.65394 10.25873 10.61517 11.58807 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.012784 B = 0.004738 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.739935 B = 5908.823857 C = 7068.362444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.101 0.899 4 C 0.144 3.856 5 N -0.727 5.727 6 C -0.240 4.240 7 H 0.068 0.932 8 C -0.013 4.013 9 N -0.928 5.928 10 Si 0.905 3.095 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.286 1.286 14 N -0.585 5.585 15 C 0.091 3.909 16 C 0.603 3.397 17 O -0.529 6.529 18 C 0.010 3.990 19 N -0.259 5.259 20 N -0.381 5.381 21 H 0.441 0.559 22 C 0.002 3.998 23 C -0.138 4.138 24 C -0.043 4.043 25 C -0.122 4.122 26 C -0.113 4.113 27 C -0.045 4.045 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.028 0.972 32 H 0.020 0.980 33 H 0.388 0.612 34 H 0.254 0.746 35 H 0.047 0.953 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.081 0.919 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 -0.479 -18.129 19.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.119 0.881 4 C 0.015 3.985 5 N -0.372 5.372 6 C -0.371 4.371 7 H 0.086 0.914 8 C -0.209 4.209 9 N -0.576 5.576 10 Si 0.736 3.264 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.213 1.213 14 N -0.317 5.317 15 C -0.052 4.052 16 C 0.389 3.611 17 O -0.404 6.404 18 C -0.150 4.150 19 N -0.095 5.095 20 N -0.093 5.093 21 H 0.284 0.716 22 C -0.124 4.124 23 C -0.148 4.148 24 C -0.081 4.081 25 C -0.159 4.159 26 C -0.151 4.151 27 C -0.084 4.084 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.038 0.962 33 H 0.222 0.778 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.100 0.900 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.027 -0.814 -17.513 19.283 hybrid contribution 1.104 -0.544 0.138 1.238 sum -6.923 -1.357 -17.375 18.753 Atomic orbital electron populations 1.22053 0.95150 1.02087 1.01922 1.21414 0.93206 0.98516 0.84601 0.88138 1.21002 0.87175 0.96705 0.93581 1.42306 0.99679 1.70090 1.25120 1.19165 0.89435 1.29461 0.99075 0.91404 1.24739 0.96441 1.01760 0.97964 1.69695 1.07059 1.50746 1.30104 0.86305 0.79036 0.79221 0.81822 1.21447 1.21782 1.21321 1.47478 1.49851 1.12508 1.21841 1.21784 1.00936 0.81339 1.01126 1.16869 0.77985 0.85025 0.81264 1.90768 1.54410 1.18449 1.76752 1.21623 1.02333 0.93067 0.97982 1.74069 1.21006 1.16712 0.97713 1.43037 1.33055 1.17661 1.15573 0.71576 1.21089 1.00235 0.91013 1.00109 1.19862 1.01950 0.99112 0.93864 1.19978 0.95389 0.92355 1.00411 1.21671 0.98189 1.01525 0.94536 1.21553 1.01135 0.94245 0.98165 1.20197 0.97613 0.98750 0.91853 0.92396 0.91423 0.92706 0.95447 0.96243 0.77778 0.93629 0.93458 0.90133 0.91191 0.90826 0.89335 0.91552 0.91274 0.91146 0.91466 0.90039 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.19 37.16 0.34 -1.81 16 2 C 0.13 2.33 2.79 -67.93 -0.19 2.14 16 3 H 0.10 2.07 6.91 -51.93 -0.36 1.71 16 4 C 0.14 3.08 5.52 -4.04 -0.02 3.06 16 5 N -0.73 -19.80 5.43 -59.91 -0.33 -20.13 16 6 C -0.24 -7.06 9.99 -15.06 -0.15 -7.21 16 7 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 8 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 9 N -0.93 -29.63 13.06 55.49 0.72 -28.90 16 10 Si 0.90 23.26 29.55 -169.99 -5.02 18.23 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 13 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 14 N -0.58 -11.07 2.24 -175.10 -0.39 -11.47 16 15 C 0.09 1.52 8.35 59.85 0.50 2.01 16 16 C 0.60 12.45 7.37 -12.39 -0.09 12.36 16 17 O -0.53 -12.23 15.24 5.30 0.08 -12.15 16 18 C 0.01 0.18 6.74 -82.99 -0.56 -0.38 16 19 N -0.26 -4.02 9.04 33.28 0.30 -3.72 16 20 N -0.38 -4.54 6.82 33.42 0.23 -4.31 16 21 H 0.44 3.36 8.96 -190.21 -1.71 1.65 16 22 C 0.00 0.03 7.12 -82.45 -0.59 -0.56 16 23 C -0.14 -2.21 5.99 -104.88 -0.63 -2.84 16 24 C -0.04 -0.64 5.51 -27.80 -0.15 -0.80 16 25 C -0.12 -1.35 5.91 -26.43 -0.16 -1.51 16 26 C -0.11 -0.97 5.89 -26.46 -0.16 -1.13 16 27 C -0.05 -0.39 6.31 -27.67 -0.17 -0.56 16 28 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.02 0.41 6.86 -51.93 -0.36 0.05 16 33 H 0.39 11.50 7.06 -40.82 -0.29 11.21 16 34 H 0.25 7.84 8.31 -40.82 -0.34 7.50 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.44 5.92 -51.93 -0.31 1.13 16 37 H 0.07 1.15 6.54 -51.93 -0.34 0.81 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 1.58 7.79 -51.93 -0.40 1.18 16 40 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -36.10 358.27 -9.48 -45.59 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -8.35 Total: 9.14 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.12 Total: 2.31 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: 0.53 Total: -68.53 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.08 Total: -12.15 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.10 -9.48 -45.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753699791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.348 kcal (2) G-P(sol) polarization free energy of solvation -36.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds