Wall clock time and date at job start Tue Mar 31 2020 09:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47326 * 119.99412 * 2 1 3 5 5 C 1.53000 * 109.47270 * 185.00410 * 4 2 1 6 6 N 1.46500 * 109.46936 * 180.02562 * 5 4 2 7 7 C 1.36936 * 119.99957 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99930 * 359.97438 * 7 6 5 9 9 C 1.38809 * 120.00375 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99803 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00389 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46572 * 90.00156 * 11 9 7 13 13 H 1.48497 * 109.47129 * 210.00031 * 11 9 7 14 14 H 1.48499 * 109.46914 * 330.00588 * 11 9 7 15 15 N 1.46505 * 109.47551 * 240.00025 * 2 1 3 16 16 C 1.34776 * 120.00034 * 84.99387 * 15 2 1 17 17 O 1.21284 * 120.00065 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99754 * 180.02562 * 16 15 2 19 19 H 1.09002 * 109.42669 * 300.00175 * 18 16 15 20 20 C 1.53030 * 109.42553 * 180.11593 * 18 16 15 21 21 C 1.53380 * 109.72252 * 168.24508 * 20 18 16 22 22 C 1.50883 * 108.19539 * 50.53225 * 21 20 18 23 23 C 1.34568 * 128.32551 * 163.42428 * 22 21 20 24 24 N 1.35203 * 107.61755 * 180.14247 * 23 22 21 25 25 H 0.97001 * 126.00464 * 179.97438 * 24 23 22 26 26 N 1.40310 * 107.99226 * 359.97024 * 24 23 22 27 27 C 1.30129 * 108.12435 * 359.95452 * 26 24 23 28 28 C 1.50952 * 128.28866 * 180.29439 * 27 26 24 29 29 H 1.09006 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47353 * 300.00379 * 1 2 3 31 31 H 1.09001 * 109.47242 * 60.00544 * 1 2 3 32 32 H 1.08997 * 109.47138 * 305.00804 * 4 2 1 33 33 H 1.09004 * 109.46972 * 65.00523 * 4 2 1 34 34 H 1.09005 * 109.47082 * 300.00066 * 5 4 2 35 35 H 1.08995 * 109.47558 * 59.99897 * 5 4 2 36 36 H 0.97002 * 120.00416 * 359.97438 * 6 5 4 37 37 H 0.97001 * 120.00331 * 179.97438 * 10 9 7 38 38 H 0.96996 * 119.99794 * 265.00127 * 15 2 1 39 39 H 1.08998 * 109.42652 * 288.32548 * 20 18 16 40 40 H 1.09005 * 109.42712 * 48.21638 * 20 18 16 41 41 H 1.09002 * 109.71677 * 170.21167 * 21 20 18 42 42 H 1.09002 * 109.71777 * 290.81891 * 21 20 18 43 43 H 1.08002 * 126.19604 * 0.12577 * 23 22 21 44 44 H 1.09000 * 109.71233 * 43.49687 * 28 27 26 45 45 H 1.09001 * 109.71428 * 282.85530 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6130 1.3137 6 7 4.0532 -1.3041 2.5097 7 6 5.3953 -1.3409 2.7791 8 1 6.0938 -0.8608 2.1097 9 6 5.8581 -1.9951 3.9125 10 7 5.0069 -2.5806 4.7280 11 14 7.6889 -2.0460 4.2796 12 1 8.0601 -0.8714 5.1092 13 1 8.0116 -3.2942 5.0164 14 1 8.4504 -2.0123 3.0052 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0183 -2.3572 17 8 1.8589 1.1586 -2.4116 18 6 2.6490 -0.7289 -3.5877 19 1 3.6481 -1.1210 -3.3977 20 6 2.7028 0.2560 -4.7577 21 6 3.4790 -0.3680 -5.9242 22 6 2.9077 -1.7389 -6.1906 23 6 3.0604 -2.5086 -7.2838 24 7 2.3667 -3.6510 -7.0800 25 1 2.2951 -4.3931 -7.7006 26 7 1.7686 -3.5748 -5.8130 27 6 2.0928 -2.4326 -5.2804 28 6 1.7027 -1.8868 -3.9282 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.6053 -0.2616 2.1369 33 1 1.7517 -1.7714 1.2057 34 1 3.9995 -1.0726 0.4260 35 1 3.8532 0.4372 1.3573 36 1 3.4259 -1.7355 3.1107 37 1 5.3302 -3.0381 5.5198 38 1 2.2491 -1.6317 -1.1526 39 1 1.6887 0.4905 -5.0812 40 1 3.2023 1.1709 -4.4389 41 1 3.3711 0.2544 -6.8125 42 1 4.5333 -0.4532 -5.6607 43 1 3.6331 -2.2589 -8.1647 44 1 1.7940 -2.6698 -3.1754 45 1 0.6751 -1.5248 -3.9602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754023708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:15 Heat of formation + Delta-G solvation = 25.243973 kcal Electronic energy + Delta-G solvation = -24835.873091 eV Core-core repulsion = 21275.141012 eV Total energy + Delta-G solvation = -3560.732079 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.75337 -39.96223 -36.95744 -35.95214 -34.32936 -32.63000 -31.89948 -31.07290 -30.17969 -28.69672 -27.84264 -25.31350 -24.01146 -22.83849 -21.53951 -21.30130 -20.61277 -20.27214 -19.09204 -17.88120 -17.28149 -16.85175 -16.11419 -15.61128 -15.05294 -14.78664 -14.61631 -14.14748 -14.01857 -13.76253 -13.70725 -13.44768 -13.32950 -13.07951 -12.98286 -12.79661 -12.39974 -12.04960 -11.84024 -11.61249 -11.38111 -11.19781 -11.07606 -11.00048 -10.76364 -10.60357 -10.54827 -10.49887 -10.03024 -9.69859 -9.67170 -9.63799 -8.95356 -8.83552 -8.69356 -6.90986 -5.75614 -3.04220 1.62508 2.45363 2.52540 2.74780 3.26279 3.44582 3.49593 3.51278 4.14096 4.41372 4.58342 4.63862 4.66117 4.84309 4.96773 5.06047 5.12756 5.22405 5.29508 5.31463 5.35729 5.40251 5.56329 5.57227 5.66686 5.73973 5.76874 5.80713 5.91300 5.97464 6.00637 6.08063 6.14119 6.27127 6.31983 6.37035 6.39199 6.61265 6.84132 6.89846 7.00163 7.40083 7.62032 7.71299 8.31895 8.43578 9.54548 10.12675 10.47206 11.47382 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.002913 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.126568 B = 9608.287232 C =10572.682447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.144 3.856 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.154 3.846 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 N -0.718 5.718 16 C 0.521 3.479 17 O -0.542 6.542 18 C -0.104 4.104 19 H 0.104 0.896 20 C -0.097 4.097 21 C -0.042 4.042 22 C -0.234 4.234 23 C 0.059 3.941 24 N -0.486 5.486 25 H 0.439 0.561 26 N -0.286 5.286 27 C 0.086 3.914 28 C -0.029 4.029 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.383 0.617 37 H 0.255 0.745 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.176 0.824 44 H 0.089 0.911 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.140 1.231 -24.924 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.208 1.208 15 N -0.369 5.369 16 C 0.306 3.694 17 O -0.419 6.419 18 C -0.126 4.126 19 H 0.122 0.878 20 C -0.135 4.135 21 C -0.080 4.080 22 C -0.246 4.246 23 C -0.087 4.087 24 N -0.194 5.194 25 H 0.282 0.718 26 N -0.109 5.109 27 C -0.083 4.083 28 C -0.068 4.068 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.036 0.964 35 H 0.035 0.965 36 H 0.217 0.783 37 H 0.065 0.935 38 H 0.236 0.764 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.193 0.807 44 H 0.108 0.892 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.802 1.025 -24.811 26.346 hybrid contribution 1.414 -0.505 -0.028 1.502 sum -7.388 0.520 -24.839 25.920 Atomic orbital electron populations 1.22156 0.95504 1.01981 1.02241 1.20975 0.93518 0.97705 0.83847 0.89380 1.22064 0.98014 1.00803 0.96447 1.20632 0.90415 0.95577 0.90710 1.42374 1.05362 1.64942 1.25167 1.19234 0.83866 1.28414 1.05469 0.91245 1.24741 0.97702 1.00930 0.97691 1.69659 1.32786 1.40745 1.15132 0.86189 0.85113 0.77025 0.77877 1.21709 1.21770 1.20758 1.46175 1.66841 1.14251 1.09662 1.20433 0.77364 0.87213 0.84365 1.90684 1.50102 1.15955 1.85140 1.21359 1.01036 0.96319 0.93869 0.87841 1.21374 1.01660 0.97646 0.92834 1.20044 0.98906 0.90673 0.98391 1.20180 1.08500 1.00388 0.95490 1.22075 0.98409 0.87848 1.00328 1.46332 1.41085 1.16762 1.15254 0.71761 1.77032 1.20346 1.20144 0.93330 1.22196 0.97113 0.91873 0.97085 1.20028 0.99578 0.96398 0.90821 0.92529 0.91623 0.92429 0.90319 0.91378 0.96356 0.96453 0.78329 0.93529 0.76375 0.91213 0.90103 0.90856 0.90950 0.80713 0.89232 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.48 37.16 0.35 -1.50 16 2 C 0.14 1.92 2.57 -67.93 -0.17 1.74 16 3 H 0.09 1.33 7.58 -51.93 -0.39 0.94 16 4 C -0.14 -2.06 4.87 -26.73 -0.13 -2.20 16 5 C 0.15 3.07 6.15 -4.04 -0.02 3.05 16 6 N -0.73 -18.67 5.60 -59.91 -0.34 -19.00 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 10 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 11 Si 0.91 22.57 29.55 -169.99 -5.02 17.54 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 15 N -0.72 -8.66 4.43 -53.80 -0.24 -8.90 16 16 C 0.52 6.57 7.10 -10.99 -0.08 6.49 16 17 O -0.54 -8.63 15.43 5.55 0.09 -8.54 16 18 C -0.10 -1.04 2.47 -91.57 -0.23 -1.26 16 19 H 0.10 0.99 8.10 -51.93 -0.42 0.57 16 20 C -0.10 -0.92 4.65 -26.52 -0.12 -1.05 16 21 C -0.04 -0.33 6.28 -27.60 -0.17 -0.50 16 22 C -0.23 -2.13 5.89 -104.98 -0.62 -2.75 16 23 C 0.06 0.42 11.95 -17.36 -0.21 0.22 16 24 N -0.49 -3.88 7.37 30.35 0.22 -3.66 16 25 H 0.44 2.06 8.96 -182.44 -1.64 0.42 16 26 N -0.29 -3.25 12.68 33.75 0.43 -2.82 16 27 C 0.09 0.92 7.10 -82.34 -0.58 0.33 16 28 C -0.03 -0.27 5.42 -27.57 -0.15 -0.42 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.37 7.75 -51.93 -0.40 -0.04 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.38 10.17 7.67 -40.82 -0.31 9.85 16 37 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.40 4.28 8.23 -40.82 -0.34 3.95 16 39 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.08 0.84 7.69 -51.93 -0.40 0.44 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 44 H 0.09 0.78 7.86 -51.93 -0.41 0.37 16 45 H 0.09 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -35.14 368.27 -9.47 -44.61 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -8.50 Total: 8.19 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -2.38 Total: -5.29 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.80 Total: -62.06 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.54 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.14 -9.47 -44.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754023708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.858 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds