Wall clock time and date at job start Tue Mar 31 2020 09:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47069 * 2 1 4 4 C 1.52997 * 109.47326 * 119.99412 * 2 1 3 5 5 C 1.53000 * 109.47270 * 185.00410 * 4 2 1 6 6 N 1.46500 * 109.46936 * 180.02562 * 5 4 2 7 7 C 1.36936 * 119.99957 * 179.97438 * 6 5 4 8 8 H 1.08002 * 119.99930 * 359.97438 * 7 6 5 9 9 C 1.38809 * 120.00375 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99803 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00389 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46572 * 90.00156 * 11 9 7 13 13 H 1.48497 * 109.47129 * 210.00031 * 11 9 7 14 14 H 1.48499 * 109.46914 * 330.00588 * 11 9 7 15 15 N 1.46505 * 109.47551 * 240.00025 * 2 1 3 16 16 C 1.34776 * 120.00034 * 84.99387 * 15 2 1 17 17 O 1.21284 * 120.00065 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99754 * 180.02562 * 16 15 2 19 19 H 1.09002 * 109.42669 * 300.00175 * 18 16 15 20 20 C 1.53030 * 109.42553 * 180.11593 * 18 16 15 21 21 C 1.53380 * 109.72252 * 168.24508 * 20 18 16 22 22 C 1.50883 * 108.19539 * 50.53225 * 21 20 18 23 23 C 1.34568 * 128.32551 * 163.42428 * 22 21 20 24 24 N 1.35203 * 107.61755 * 180.14247 * 23 22 21 25 25 H 0.97001 * 126.00464 * 179.97438 * 24 23 22 26 26 N 1.40310 * 107.99226 * 359.97024 * 24 23 22 27 27 C 1.30129 * 108.12435 * 359.95452 * 26 24 23 28 28 C 1.50952 * 128.28866 * 180.29439 * 27 26 24 29 29 H 1.09006 * 109.47069 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47353 * 300.00379 * 1 2 3 31 31 H 1.09001 * 109.47242 * 60.00544 * 1 2 3 32 32 H 1.08997 * 109.47138 * 305.00804 * 4 2 1 33 33 H 1.09004 * 109.46972 * 65.00523 * 4 2 1 34 34 H 1.09005 * 109.47082 * 300.00066 * 5 4 2 35 35 H 1.08995 * 109.47558 * 59.99897 * 5 4 2 36 36 H 0.97002 * 120.00416 * 359.97438 * 6 5 4 37 37 H 0.97001 * 120.00331 * 179.97438 * 10 9 7 38 38 H 0.96996 * 119.99794 * 265.00127 * 15 2 1 39 39 H 1.08998 * 109.42652 * 288.32548 * 20 18 16 40 40 H 1.09005 * 109.42712 * 48.21638 * 20 18 16 41 41 H 1.09002 * 109.71677 * 170.21167 * 21 20 18 42 42 H 1.09002 * 109.71777 * 290.81891 * 21 20 18 43 43 H 1.08002 * 126.19604 * 0.12577 * 23 22 21 44 44 H 1.09000 * 109.71233 * 43.49687 * 28 27 26 45 45 H 1.09001 * 109.71428 * 282.85530 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5648 -0.6130 1.3137 6 7 4.0532 -1.3041 2.5097 7 6 5.3953 -1.3409 2.7791 8 1 6.0938 -0.8608 2.1097 9 6 5.8581 -1.9951 3.9125 10 7 5.0069 -2.5806 4.7280 11 14 7.6889 -2.0460 4.2796 12 1 8.0601 -0.8714 5.1092 13 1 8.0116 -3.2942 5.0164 14 1 8.4504 -2.0123 3.0052 15 7 2.0184 -0.6906 -1.1962 16 6 2.1471 -0.0183 -2.3572 17 8 1.8589 1.1586 -2.4116 18 6 2.6490 -0.7289 -3.5877 19 1 3.6481 -1.1210 -3.3977 20 6 2.7028 0.2560 -4.7577 21 6 3.4790 -0.3680 -5.9242 22 6 2.9077 -1.7389 -6.1906 23 6 3.0604 -2.5086 -7.2838 24 7 2.3667 -3.6510 -7.0800 25 1 2.2951 -4.3931 -7.7006 26 7 1.7686 -3.5748 -5.8130 27 6 2.0928 -2.4326 -5.2804 28 6 1.7027 -1.8868 -3.9282 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 1.6053 -0.2616 2.1369 33 1 1.7517 -1.7714 1.2057 34 1 3.9995 -1.0726 0.4260 35 1 3.8532 0.4372 1.3573 36 1 3.4259 -1.7355 3.1107 37 1 5.3302 -3.0381 5.5198 38 1 2.2491 -1.6317 -1.1526 39 1 1.6887 0.4905 -5.0812 40 1 3.2023 1.1709 -4.4389 41 1 3.3711 0.2544 -6.8125 42 1 4.5333 -0.4532 -5.6607 43 1 3.6331 -2.2589 -8.1647 44 1 1.7940 -2.6698 -3.1754 45 1 0.6751 -1.5248 -3.9602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754023708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:14 Heat of formation + Delta-G solvation = 0.756552 kcal Electronic energy + Delta-G solvation = -24836.934945 eV Core-core repulsion = 21275.141012 eV Total energy + Delta-G solvation = -3561.793933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.42053 -40.97946 -38.08892 -36.96996 -36.05402 -33.69880 -33.12773 -32.31872 -31.16066 -29.43568 -29.34755 -26.15959 -25.77325 -23.81813 -23.03521 -21.99084 -21.72961 -21.25930 -19.83542 -19.18772 -18.52200 -17.95234 -17.23045 -16.69054 -16.40245 -15.85128 -15.62667 -15.49261 -15.26409 -14.99782 -14.72942 -14.69812 -14.47616 -14.21912 -13.88666 -13.70353 -13.45229 -13.09006 -12.88362 -12.86340 -12.83061 -12.38183 -12.31577 -12.24852 -12.13121 -11.97995 -11.90248 -11.82282 -11.60813 -11.21400 -10.94530 -10.71327 -10.35822 -10.01207 -9.31400 -9.00090 -7.95638 -5.24547 1.00405 1.47586 1.49295 1.57778 1.65429 1.78998 2.03159 2.28837 2.55935 3.38114 3.41839 3.64112 3.73960 3.86834 3.99202 4.10020 4.13693 4.20589 4.37070 4.41915 4.44954 4.49959 4.59888 4.64460 4.69124 4.70657 4.79958 4.87533 4.90484 4.99348 5.02452 5.10882 5.25271 5.27352 5.29096 5.30215 5.36953 5.41429 5.49112 5.63264 5.72619 6.27122 6.51775 6.62163 6.74772 7.30974 7.33498 8.09212 8.32903 9.27811 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.002913 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.126568 B = 9608.287232 C =10572.682447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.151 3.849 3 H 0.069 0.931 4 C -0.119 4.119 5 C 0.154 3.846 6 N -0.746 5.746 7 C -0.248 4.248 8 H 0.072 0.928 9 C -0.074 4.074 10 N -0.968 5.968 11 Si 0.973 3.027 12 H -0.287 1.287 13 H -0.293 1.293 14 H -0.269 1.269 15 N -0.714 5.714 16 C 0.521 3.479 17 O -0.577 6.577 18 C -0.094 4.094 19 H 0.110 0.890 20 C -0.095 4.095 21 C -0.033 4.033 22 C -0.259 4.259 23 C 0.075 3.925 24 N -0.480 5.480 25 H 0.451 0.549 26 N -0.327 5.327 27 C 0.070 3.930 28 C -0.024 4.024 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.024 0.976 35 H 0.007 0.993 36 H 0.375 0.625 37 H 0.252 0.748 38 H 0.410 0.590 39 H 0.060 0.940 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.216 0.784 44 H 0.094 0.906 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 0.918 -26.745 27.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.046 3.954 3 H 0.088 0.912 4 C -0.157 4.157 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.379 4.379 8 H 0.090 0.910 9 C -0.267 4.267 10 N -0.619 5.619 11 Si 0.801 3.199 12 H -0.215 1.215 13 H -0.220 1.220 14 H -0.194 1.194 15 N -0.365 5.365 16 C 0.308 3.692 17 O -0.456 6.456 18 C -0.115 4.115 19 H 0.128 0.872 20 C -0.133 4.133 21 C -0.071 4.071 22 C -0.270 4.270 23 C -0.071 4.071 24 N -0.190 5.190 25 H 0.298 0.702 26 N -0.150 5.150 27 C -0.098 4.098 28 C -0.063 4.063 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.042 0.958 35 H 0.025 0.975 36 H 0.207 0.793 37 H 0.061 0.939 38 H 0.246 0.754 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.233 0.767 44 H 0.113 0.887 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.139 0.702 -26.669 27.893 hybrid contribution 1.185 -0.388 0.457 1.328 sum -6.954 0.314 -26.212 27.121 Atomic orbital electron populations 1.22075 0.93723 1.02889 1.02387 1.20806 0.94770 0.96422 0.83381 0.91243 1.21898 0.94608 1.01699 0.97515 1.20766 0.93489 0.94172 0.88807 1.42577 1.04486 1.65280 1.26566 1.19613 0.85311 1.27635 1.05374 0.90983 1.25560 1.02036 1.01226 0.97829 1.69806 1.34626 1.41897 1.15579 0.85154 0.80126 0.76658 0.77922 1.21460 1.21966 1.19420 1.46150 1.66495 1.14603 1.09260 1.20879 0.76545 0.86804 0.84992 1.90668 1.51697 1.17555 1.85702 1.21299 1.01214 0.96354 0.92681 0.87201 1.21339 1.01373 0.97209 0.93379 1.19998 0.98691 0.90288 0.98150 1.20425 1.09307 1.01193 0.96086 1.22693 0.97027 0.86622 1.00774 1.46397 1.40468 1.17571 1.14534 0.70229 1.76947 1.22021 1.20923 0.95093 1.22360 0.97706 0.92161 0.97566 1.19962 0.99165 0.96149 0.91053 0.91217 0.90756 0.93011 0.90299 0.90424 0.95758 0.97477 0.79287 0.93919 0.75382 0.92114 0.91200 0.89159 0.90351 0.76699 0.88713 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.48 71.98 0.68 -2.66 16 2 C 0.15 3.93 2.57 44.99 0.12 4.04 16 3 H 0.07 2.10 7.58 -2.38 -0.02 2.08 16 4 C -0.12 -3.54 4.87 30.59 0.15 -3.40 16 5 C 0.15 6.09 6.15 86.38 0.53 6.62 16 6 N -0.75 -37.98 5.60 -343.45 -1.92 -39.90 16 7 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 8 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 9 C -0.07 -4.28 5.50 84.86 0.47 -3.82 16 10 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 11 Si 0.97 46.26 29.55 68.60 2.03 48.28 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 N -0.71 -16.75 4.43 -442.52 -1.96 -18.71 16 16 C 0.52 13.04 7.10 87.66 0.62 13.66 16 17 O -0.58 -18.55 15.43 -3.04 -0.05 -18.60 16 18 C -0.09 -1.82 2.47 -11.41 -0.03 -1.85 16 19 H 0.11 2.00 8.10 -2.39 -0.02 1.98 16 20 C -0.09 -1.76 4.65 30.73 0.14 -1.61 16 21 C -0.03 -0.46 6.28 30.03 0.19 -0.27 16 22 C -0.26 -4.23 5.89 -20.10 -0.12 -4.35 16 23 C 0.08 0.87 11.95 83.33 1.00 1.86 16 24 N -0.48 -6.74 7.37 -57.88 -0.43 -7.17 16 25 H 0.45 3.34 8.96 -213.18 -1.91 1.43 16 26 N -0.33 -7.13 12.68 -47.13 -0.60 -7.72 16 27 C 0.07 1.42 7.10 43.44 0.31 1.73 16 28 C -0.02 -0.44 5.42 30.05 0.16 -0.28 16 29 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.02 0.94 7.75 -2.38 -0.02 0.93 16 35 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 36 H 0.38 20.05 7.67 -92.71 -0.71 19.34 16 37 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 38 H 0.41 8.31 8.23 -92.71 -0.76 7.54 16 39 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 40 H 0.07 1.44 7.69 -2.38 -0.02 1.42 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.22 0.55 8.06 -2.91 -0.02 0.52 16 44 H 0.09 1.60 7.86 -2.39 -0.02 1.58 16 45 H 0.09 1.62 8.12 -2.39 -0.02 1.60 16 Total: -1.00 -75.30 368.27 0.04 -75.26 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -2.37 Total: 30.99 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 5.06 Total: -3.45 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -4.63 Total: -132.48 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.05 Total: -18.60 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -75.30 0.04 -75.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754023708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.014 kcal (2) G-P(sol) polarization free energy of solvation -75.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds