Wall clock time and date at job start Tue Mar 31 2020 09:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47826 * 2 1 4 4 C 1.53008 * 109.46905 * 240.00074 * 2 1 3 5 5 N 1.46500 * 109.47096 * 185.00480 * 4 2 1 6 6 C 1.46503 * 119.99857 * 269.99950 * 5 4 2 7 7 C 1.36935 * 120.00115 * 90.00092 * 5 4 2 8 8 H 1.08004 * 119.99891 * 22.33718 * 7 5 4 9 9 C 1.38809 * 119.99973 * 202.33823 * 7 5 4 10 10 N 1.31618 * 120.00152 * 11.35393 * 9 7 5 11 11 Si 1.86807 * 119.99985 * 191.36283 * 9 7 5 12 12 H 1.48494 * 109.47157 * 89.99545 * 11 9 7 13 13 H 1.48501 * 109.46752 * 209.99761 * 11 9 7 14 14 H 1.48493 * 109.46700 * 329.99426 * 11 9 7 15 15 N 1.46503 * 109.46932 * 120.00621 * 2 1 3 16 16 C 1.34771 * 119.99628 * 274.99305 * 15 2 1 17 17 O 1.21602 * 120.00219 * 0.02562 * 16 15 2 18 18 C 1.47430 * 119.99967 * 179.97438 * 16 15 2 19 19 C 1.41293 * 126.41420 * 0.02846 * 18 16 15 20 20 N 1.30446 * 108.02164 * 179.97438 * 19 18 16 21 21 N 1.39933 * 108.90090 * 359.97438 * 20 19 18 22 22 C 1.46499 * 125.75311 * 180.26195 * 21 20 19 23 23 C 1.53781 * 113.61402 * 193.82869 * 22 21 20 24 24 C 1.53951 * 87.02230 * 220.05209 * 23 22 21 25 25 C 1.53785 * 113.60974 * 96.22241 * 22 21 20 26 26 C 1.34255 * 108.48802 * 0.02562 * 21 20 19 27 27 H 1.09000 * 109.46986 * 59.99316 * 1 2 3 28 28 H 1.08994 * 109.47826 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47351 * 299.99959 * 1 2 3 30 30 H 1.08997 * 109.46850 * 305.00399 * 4 2 1 31 31 H 1.09000 * 109.46636 * 65.00048 * 4 2 1 32 32 H 1.09004 * 109.47197 * 94.22604 * 6 5 4 33 33 H 1.08992 * 109.47006 * 214.22991 * 6 5 4 34 34 H 1.09004 * 109.46807 * 334.23001 * 6 5 4 35 35 H 0.97001 * 120.00146 * 180.02562 * 10 9 7 36 36 H 0.96995 * 120.00213 * 94.99937 * 15 2 1 37 37 H 1.08006 * 125.98575 * 359.95785 * 19 18 16 38 38 H 1.08996 * 112.85173 * 325.03015 * 22 21 20 39 39 H 1.09001 * 113.61032 * 334.57037 * 23 22 21 40 40 H 1.08994 * 113.61580 * 105.47294 * 23 22 21 41 41 H 1.08997 * 113.53927 * 270.81226 * 24 23 22 42 42 H 1.09005 * 113.74726 * 139.94154 * 24 23 22 43 43 H 1.08993 * 113.61695 * 254.52583 * 25 22 21 44 44 H 1.08994 * 113.61512 * 25.43743 * 25 22 21 45 45 H 1.07999 * 126.29023 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.5000 -0.8265 -1.1906 6 6 4.3343 0.2339 -1.7613 7 6 4.0848 -1.9161 -0.6024 8 1 3.5335 -2.8401 -0.5088 9 6 5.3861 -1.8329 -0.1265 10 7 5.9794 -0.6617 -0.0340 11 14 6.2953 -3.3833 0.3826 12 1 7.0226 -3.9374 -0.7875 13 1 7.2648 -3.0576 1.4592 14 1 5.3212 -4.3873 0.8807 15 7 2.0182 -0.6908 1.1961 16 6 2.1470 -0.0185 2.3571 17 8 1.8575 1.1613 2.4118 18 6 2.6379 -0.7137 3.5609 19 6 3.0107 -2.0735 3.6508 20 7 3.3895 -2.3080 4.8768 21 7 3.2793 -1.1268 5.6190 22 6 3.6140 -0.9725 7.0369 23 6 3.0811 0.3298 7.6574 24 6 4.4195 0.4233 8.4123 25 6 5.0284 -0.4197 7.2793 26 6 2.8202 -0.1577 4.8113 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6052 -1.7198 -1.2952 31 1 1.7515 -0.1583 -2.1370 32 1 4.6023 0.9454 -0.9802 33 1 5.2402 -0.2030 -2.1813 34 1 3.7810 0.7483 -2.5471 35 1 6.8889 -0.6036 0.2983 36 1 2.2489 -1.6319 1.1525 37 1 2.9862 -2.7929 2.8455 38 1 3.3860 -1.8615 7.6248 39 1 2.9320 1.1298 6.9322 40 1 2.2203 0.1825 8.3095 41 1 4.4112 -0.0832 9.3774 42 1 4.8220 1.4348 8.4687 43 1 5.7373 -1.1711 7.6267 44 1 5.4126 0.1752 6.4507 45 1 2.6292 0.8684 5.0885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754311170.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:45 Heat of formation + Delta-G solvation = 63.645029 kcal Electronic energy + Delta-G solvation = -26020.606212 eV Core-core repulsion = 22461.539328 eV Total energy + Delta-G solvation = -3559.066884 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.49396 -40.33512 -39.29465 -37.88409 -35.61892 -33.37019 -32.70778 -31.81427 -30.78047 -27.99912 -27.31920 -26.83945 -26.49652 -24.30061 -23.25807 -22.32880 -21.58034 -20.95277 -20.18428 -19.21297 -18.55421 -17.11812 -17.00243 -16.79219 -16.66756 -16.12820 -15.66681 -15.52590 -15.28245 -15.08435 -14.68673 -14.45883 -14.11081 -13.95003 -13.75201 -13.44892 -13.29965 -13.16820 -13.05365 -12.82617 -12.70389 -12.50404 -12.40094 -12.14863 -12.05806 -11.92098 -11.88780 -11.65706 -11.62595 -11.49795 -10.73115 -10.56877 -10.52649 -9.89832 -9.48353 -8.71724 -7.74550 -5.20525 0.55956 1.18889 1.38436 1.46843 1.49106 1.55309 2.49409 2.55647 2.73506 3.18371 3.42413 3.44106 3.69105 3.75393 3.75986 3.77301 3.82143 4.16107 4.28236 4.37628 4.48493 4.51280 4.60053 4.62359 4.70258 4.78104 4.82016 4.89816 4.90272 4.92225 4.98077 5.01054 5.07111 5.25286 5.29987 5.37767 5.42911 5.47647 5.70259 5.78302 5.88831 5.91530 6.38504 6.52146 6.90917 7.21532 7.54560 7.94574 8.40479 9.29256 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.013008 B = 0.005005 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.931420 B = 5593.219091 C = 6929.017206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.122 3.878 3 H 0.040 0.960 4 C 0.141 3.859 5 N -0.611 5.611 6 C 0.179 3.821 7 C -0.242 4.242 8 H 0.083 0.917 9 C -0.042 4.042 10 N -0.935 5.935 11 Si 0.945 3.055 12 H -0.292 1.292 13 H -0.312 1.312 14 H -0.255 1.255 15 N -0.682 5.682 16 C 0.590 3.410 17 O -0.608 6.608 18 C -0.307 4.307 19 C 0.083 3.917 20 N -0.322 5.322 21 N -0.345 5.345 22 C 0.115 3.885 23 C -0.140 4.140 24 C -0.118 4.118 25 C -0.156 4.156 26 C 0.125 3.875 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.075 0.925 32 H -0.010 1.010 33 H 0.018 0.982 34 H 0.028 0.972 35 H 0.239 0.761 36 H 0.404 0.596 37 H 0.195 0.805 38 H 0.138 0.862 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.735 -0.367 13.719 16.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.058 0.942 4 C 0.014 3.986 5 N -0.333 5.333 6 C 0.034 3.966 7 C -0.372 4.372 8 H 0.100 0.900 9 C -0.237 4.237 10 N -0.582 5.582 11 Si 0.776 3.224 12 H -0.220 1.220 13 H -0.240 1.240 14 H -0.179 1.179 15 N -0.330 5.330 16 C 0.379 3.621 17 O -0.492 6.492 18 C -0.321 4.321 19 C -0.104 4.104 20 N -0.142 5.142 21 N -0.123 5.123 22 C 0.015 3.985 23 C -0.178 4.178 24 C -0.156 4.156 25 C -0.194 4.194 26 C -0.027 4.027 27 H 0.100 0.900 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.009 0.991 33 H 0.037 0.963 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.240 0.760 37 H 0.211 0.789 38 H 0.156 0.844 39 H 0.107 0.893 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.086 0.914 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -8.311 -0.451 14.713 16.904 hybrid contribution 1.123 -0.309 -0.561 1.293 sum -7.188 -0.760 14.151 15.890 Atomic orbital electron populations 1.22023 0.93787 1.02630 1.01998 1.21715 0.94102 0.96168 0.86543 0.94198 1.21406 0.83172 0.99481 0.94512 1.44119 1.00889 1.21974 1.66361 1.20487 0.92768 0.90000 0.93357 1.19440 0.96831 0.90295 1.30634 0.89967 1.25556 0.99839 0.97788 1.00547 1.70259 1.12831 1.23414 1.51693 0.85574 0.79079 0.81055 0.76724 1.21952 1.24034 1.17916 1.45511 1.64942 1.14167 1.08360 1.17450 0.76167 0.85346 0.83176 1.90633 1.55086 1.17094 1.86390 1.20377 1.20541 0.95728 0.95486 1.24208 0.95509 0.95603 0.95061 1.77043 1.25292 1.06648 1.05204 1.48876 1.47445 1.05782 1.10189 1.23674 0.98382 1.01722 0.74727 1.23492 1.00198 0.94330 0.99829 1.22722 0.94041 1.01448 0.97392 1.23473 0.95609 1.00399 0.99935 1.22994 0.94255 0.96205 0.89290 0.89992 0.91101 0.94262 0.91246 0.90719 0.99136 0.96285 0.95363 0.95161 0.76031 0.78852 0.84450 0.89255 0.87687 0.87070 0.89303 0.89817 0.91414 0.78308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.21 9.48 71.98 0.68 -3.53 16 2 C 0.12 4.58 2.88 44.99 0.13 4.71 16 3 H 0.04 1.79 7.58 -2.39 -0.02 1.77 16 4 C 0.14 5.17 5.36 86.38 0.46 5.63 16 5 N -0.61 -28.83 2.82 -726.92 -2.05 -30.88 16 6 C 0.18 8.93 9.01 127.77 1.15 10.08 16 7 C -0.24 -12.12 8.02 84.03 0.67 -11.45 16 8 H 0.08 3.83 7.84 -2.91 -0.02 3.80 16 9 C -0.04 -2.27 5.13 84.86 0.44 -1.84 16 10 N -0.93 -55.60 10.59 21.65 0.23 -55.37 16 11 Si 0.95 44.39 29.57 68.60 2.03 46.42 16 12 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 13 H -0.31 -15.60 7.11 99.48 0.71 -14.90 16 14 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 15 N -0.68 -27.21 4.48 -445.80 -2.00 -29.21 16 16 C 0.59 25.32 7.78 86.67 0.67 26.00 16 17 O -0.61 -29.19 16.56 -4.04 -0.07 -29.26 16 18 C -0.31 -11.67 6.13 -20.15 -0.12 -11.80 16 19 C 0.08 3.00 11.50 85.65 0.99 3.99 16 20 N -0.32 -11.19 12.50 -56.27 -0.70 -11.89 16 21 N -0.34 -10.06 3.77 -323.26 -1.22 -11.28 16 22 C 0.11 2.25 5.01 45.52 0.23 2.48 16 23 C -0.14 -1.89 7.45 31.18 0.23 -1.66 16 24 C -0.12 -1.32 8.09 31.18 0.25 -1.07 16 25 C -0.16 -2.86 7.88 31.13 0.25 -2.61 16 26 C 0.12 4.01 10.50 84.28 0.88 4.89 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 2.29 8.03 -2.39 -0.02 2.27 16 31 H 0.07 2.42 7.86 -2.39 -0.02 2.40 16 32 H -0.01 -0.56 7.42 -2.39 -0.02 -0.57 16 33 H 0.02 1.01 7.19 -2.39 -0.02 0.99 16 34 H 0.03 1.19 7.84 -2.38 -0.02 1.17 16 35 H 0.24 14.25 8.31 -92.71 -0.77 13.48 16 36 H 0.40 15.56 6.35 -92.71 -0.59 14.97 16 37 H 0.19 6.44 7.50 -2.91 -0.02 6.41 16 38 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.09 1.35 6.29 -2.39 -0.02 1.33 16 40 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.57 16 45 H 0.20 5.43 6.66 -2.91 -0.02 5.41 16 Total: -1.00 -73.01 367.98 3.53 -69.48 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.40 Total: 28.17 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 6.91 Total: 23.82 kcal Atomic # 7 Polarization: -132.90 SS G_CDS: -5.74 Total: -138.63 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.07 Total: -29.26 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -73.01 3.53 -69.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754311170.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.123 kcal (2) G-P(sol) polarization free energy of solvation -73.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds