Wall clock time and date at job start Tue Mar 31 2020 09:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47203 * 2 1 4 4 C 1.52996 * 109.47428 * 120.00226 * 2 1 3 5 5 N 1.46498 * 109.47333 * 174.99729 * 4 2 1 6 6 C 1.46506 * 120.00225 * 270.00221 * 5 4 2 7 7 C 1.36939 * 119.99901 * 90.00018 * 5 4 2 8 8 H 1.07999 * 119.99605 * 23.64159 * 7 5 4 9 9 C 1.38810 * 119.99942 * 203.64392 * 7 5 4 10 10 N 1.31618 * 120.00013 * 11.28103 * 9 7 5 11 11 Si 1.86799 * 119.99708 * 191.27127 * 9 7 5 12 12 H 1.48499 * 109.47586 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46730 * 120.00419 * 11 9 7 14 14 H 1.48503 * 109.47202 * 240.00123 * 11 9 7 15 15 N 1.46505 * 109.46943 * 240.00183 * 2 1 3 16 16 C 1.34779 * 120.00130 * 84.99890 * 15 2 1 17 17 O 1.21611 * 119.99487 * 359.97438 * 16 15 2 18 18 C 1.47419 * 120.00179 * 180.02562 * 16 15 2 19 19 C 1.41292 * 126.41693 * 359.68184 * 18 16 15 20 20 N 1.30444 * 108.02268 * 179.86125 * 19 18 16 21 21 N 1.39934 * 108.90070 * 0.40788 * 20 19 18 22 22 C 1.46496 * 125.75468 * 179.74090 * 21 20 19 23 23 C 1.53783 * 113.61173 * 194.13752 * 22 21 20 24 24 C 1.53953 * 87.02082 * 220.04654 * 23 22 21 25 25 C 1.53780 * 113.61644 * 96.53155 * 22 21 20 26 26 C 1.34261 * 108.49106 * 359.74037 * 21 20 19 27 27 H 1.08997 * 109.47389 * 60.00039 * 1 2 3 28 28 H 1.09008 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47073 * 299.99625 * 1 2 3 30 30 H 1.08996 * 109.47393 * 295.00214 * 4 2 1 31 31 H 1.09000 * 109.46830 * 54.99970 * 4 2 1 32 32 H 1.08999 * 109.46905 * 94.57756 * 6 5 4 33 33 H 1.08993 * 109.47030 * 214.58119 * 6 5 4 34 34 H 1.09002 * 109.47028 * 334.57936 * 6 5 4 35 35 H 0.96994 * 119.99639 * 179.97438 * 10 9 7 36 36 H 0.96997 * 120.00276 * 265.00353 * 15 2 1 37 37 H 1.07995 * 125.98388 * 0.02562 * 19 18 16 38 38 H 1.08993 * 112.85161 * 325.32943 * 22 21 20 39 39 H 1.09000 * 113.61627 * 334.56868 * 23 22 21 40 40 H 1.09000 * 113.61637 * 105.46838 * 23 22 21 41 41 H 1.09008 * 113.53623 * 270.81342 * 24 23 22 42 42 H 1.09000 * 113.74656 * 139.94502 * 24 23 22 43 43 H 1.09003 * 113.61466 * 254.52714 * 25 22 21 44 44 H 1.09001 * 113.61420 * 25.42748 * 25 22 21 45 45 H 1.07997 * 126.29289 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9920 0.5610 7 6 4.2800 0.1648 1.7239 8 1 3.8836 0.8066 2.4967 9 6 5.5798 0.3445 1.2713 10 7 5.9916 -0.2793 0.1879 11 14 6.7445 1.4719 2.1996 12 1 6.0435 2.0487 3.3748 13 1 7.9238 0.6951 2.6593 14 1 7.1925 2.5676 1.3030 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8573 1.1616 -2.4118 18 6 2.6378 -0.7133 -3.5611 19 6 3.0162 -2.0717 -3.6497 20 7 3.3896 -2.3074 -4.8771 21 7 3.2787 -1.1264 -5.6194 22 6 3.6078 -0.9732 -7.0386 23 6 3.7149 0.4925 -7.4914 24 6 2.9985 0.0616 -8.7842 25 6 2.3899 -1.0923 -7.9699 26 6 2.8197 -0.1572 -4.8115 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7517 -0.1585 2.1369 31 1 1.6055 -1.7198 1.2950 32 1 4.3540 -1.7639 -0.4802 33 1 5.0468 -2.2394 1.0889 34 1 3.4424 -2.8399 0.6058 35 1 6.8998 -0.1534 -0.1285 36 1 2.2490 -1.6317 -1.1528 37 1 2.9969 -2.7897 -2.8432 38 1 4.4539 -1.5879 -7.3456 39 1 3.1338 1.1822 -6.8793 40 1 4.7402 0.8268 -7.6500 41 1 3.6786 -0.2692 -9.5692 42 1 2.2614 0.7822 -9.1386 43 1 2.3469 -2.0357 -8.5142 44 1 1.4458 -0.8367 -7.4888 45 1 2.6275 0.8687 -5.0890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754311176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:49 Heat of formation + Delta-G solvation = 84.984934 kcal Electronic energy + Delta-G solvation = -25721.717166 eV Core-core repulsion = 22163.575649 eV Total energy + Delta-G solvation = -3558.141516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.34968 -39.04656 -38.31175 -36.15014 -33.88185 -31.97329 -31.05051 -30.38558 -29.51457 -26.16838 -26.10324 -25.67826 -25.47518 -23.00728 -21.46132 -21.25927 -20.20091 -19.58752 -19.27521 -17.93343 -16.71576 -16.04565 -15.87723 -15.35217 -15.00543 -14.77871 -14.42537 -14.09201 -13.70319 -13.52041 -13.29033 -13.07126 -12.89710 -12.80622 -12.50499 -12.38613 -12.05677 -11.84278 -11.65855 -11.36389 -11.07189 -11.03044 -10.97488 -10.80213 -10.73886 -10.66956 -10.47836 -10.12224 -9.88100 -9.79350 -9.38524 -9.18548 -8.55411 -8.45606 -8.13245 -6.66961 -5.66132 -3.12184 1.78844 2.41103 2.51136 3.42262 3.49592 3.51308 3.85797 3.99819 4.08574 4.18004 4.35774 4.41607 4.56356 4.80405 4.90243 5.18137 5.24937 5.27149 5.41028 5.44630 5.48046 5.50531 5.56322 5.56833 5.70329 5.78039 5.90368 5.91853 6.06210 6.11055 6.19304 6.33881 6.55622 6.61952 6.64673 6.72825 6.98095 6.99902 7.33385 7.40092 7.73867 7.74433 7.87012 8.33632 8.45869 9.03634 9.29591 9.92236 10.40592 11.38761 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.003927 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.882767 B = 7128.766779 C = 7985.674087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.085 0.915 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.161 3.839 7 C -0.255 4.255 8 H 0.068 0.932 9 C 0.006 3.994 10 N -0.902 5.902 11 Si 0.901 3.099 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.693 5.693 16 C 0.597 3.403 17 O -0.565 6.565 18 C -0.275 4.275 19 C 0.087 3.913 20 N -0.303 5.303 21 N -0.355 5.355 22 C 0.135 3.865 23 C -0.149 4.149 24 C -0.136 4.136 25 C -0.147 4.147 26 C 0.118 3.882 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.042 0.958 34 H -0.006 1.006 35 H 0.250 0.750 36 H 0.393 0.607 37 H 0.187 0.813 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.381 -3.389 -15.015 17.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.012 3.988 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.016 3.984 7 C -0.384 4.384 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.547 5.547 11 Si 0.732 3.268 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.342 5.342 16 C 0.384 3.616 17 O -0.445 6.445 18 C -0.290 4.290 19 C -0.101 4.101 20 N -0.122 5.122 21 N -0.135 5.135 22 C 0.033 3.967 23 C -0.187 4.187 24 C -0.174 4.174 25 C -0.186 4.186 26 C -0.032 4.032 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.013 0.987 35 H 0.060 0.940 36 H 0.227 0.773 37 H 0.204 0.796 38 H 0.141 0.859 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -7.920 -3.461 -16.033 18.214 hybrid contribution 0.751 0.816 0.986 1.484 sum -7.169 -2.645 -15.047 16.876 Atomic orbital electron populations 1.22158 0.97047 1.01003 1.01568 1.21828 0.91519 0.99161 0.86333 0.89688 1.21198 0.85813 0.97183 0.94385 1.43878 0.99047 1.20850 1.68129 1.20859 0.94474 0.85034 0.98023 1.19201 0.94540 1.10560 1.14146 0.91452 1.25013 0.98906 0.99042 0.96331 1.70051 1.17025 1.45596 1.22010 0.86232 0.81107 0.80304 0.79173 1.20356 1.21778 1.21842 1.45525 1.66181 1.13476 1.08970 1.17095 0.76611 0.85675 0.82179 1.90697 1.52652 1.15623 1.85542 1.20381 1.18300 0.95067 0.95250 1.24031 0.95904 0.95539 0.94600 1.77100 1.24864 1.05299 1.04895 1.48480 1.49089 1.06890 1.08999 1.23040 0.99588 0.98993 0.75081 1.23490 1.02939 0.94826 0.97482 1.22731 1.00204 0.98314 0.96191 1.23447 0.97917 0.99992 0.97209 1.22738 0.95271 0.95362 0.89851 0.92989 0.93265 0.92229 0.92378 0.94073 0.94851 0.93965 0.98743 0.94014 0.77312 0.79609 0.85869 0.88633 0.89637 0.89341 0.90109 0.90187 0.89220 0.80157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.48 37.16 0.35 -2.12 16 2 C 0.12 2.30 2.88 -67.93 -0.20 2.10 16 3 H 0.08 1.98 7.58 -51.93 -0.39 1.59 16 4 C 0.14 2.80 5.33 -4.04 -0.02 2.78 16 5 N -0.60 -14.50 2.78 -181.12 -0.50 -15.01 16 6 C 0.16 3.76 7.61 59.85 0.46 4.22 16 7 C -0.25 -6.99 9.66 -15.06 -0.15 -7.14 16 8 H 0.07 1.83 7.85 -52.49 -0.41 1.41 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -26.39 10.66 55.49 0.59 -25.80 16 11 Si 0.90 22.36 29.57 -169.99 -5.03 17.33 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 15 N -0.69 -13.20 4.40 -54.88 -0.24 -13.44 16 16 C 0.60 12.17 7.78 -12.52 -0.10 12.07 16 17 O -0.56 -13.16 16.56 5.27 0.09 -13.07 16 18 C -0.28 -4.86 6.13 -105.07 -0.64 -5.50 16 19 C 0.09 1.40 11.50 -16.98 -0.20 1.20 16 20 N -0.30 -4.82 12.50 30.86 0.39 -4.43 16 21 N -0.36 -4.94 3.77 -53.53 -0.20 -5.14 16 22 C 0.13 1.32 5.01 -67.12 -0.34 0.99 16 23 C -0.15 -1.16 7.45 -25.83 -0.19 -1.35 16 24 C -0.14 -0.81 8.09 -25.83 -0.21 -1.02 16 25 C -0.15 -1.14 7.88 -25.92 -0.20 -1.35 16 26 C 0.12 1.80 10.50 -16.56 -0.17 1.63 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.68 8.14 -51.92 -0.42 0.25 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.06 1.11 8.03 -51.93 -0.42 0.70 16 31 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 32 H 0.03 0.84 6.90 -51.93 -0.36 0.48 16 33 H 0.04 1.09 7.30 -51.93 -0.38 0.71 16 34 H -0.01 -0.12 7.84 -51.93 -0.41 -0.52 16 35 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.39 6.86 6.13 -40.82 -0.25 6.61 16 37 H 0.19 2.56 7.50 -52.49 -0.39 2.16 16 38 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 0.78 6.29 -51.93 -0.33 0.45 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.18 2.40 6.66 -52.49 -0.35 2.05 16 LS Contribution 367.52 15.07 5.54 5.54 Total: -1.00 -34.17 367.52 -8.10 -42.27 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -7.04 Total: 5.16 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -1.70 Total: 6.59 kcal Atomic # 7 Polarization: -63.85 SS G_CDS: 0.03 Total: -63.82 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.17 -8.10 -42.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754311176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.258 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds