Wall clock time and date at job start Tue Mar 31 2020 09:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47203 * 2 1 4 4 C 1.52996 * 109.47428 * 120.00226 * 2 1 3 5 5 N 1.46498 * 109.47333 * 174.99729 * 4 2 1 6 6 C 1.46506 * 120.00225 * 270.00221 * 5 4 2 7 7 C 1.36939 * 119.99901 * 90.00018 * 5 4 2 8 8 H 1.07999 * 119.99605 * 23.64159 * 7 5 4 9 9 C 1.38810 * 119.99942 * 203.64392 * 7 5 4 10 10 N 1.31618 * 120.00013 * 11.28103 * 9 7 5 11 11 Si 1.86799 * 119.99708 * 191.27127 * 9 7 5 12 12 H 1.48499 * 109.47586 * 0.02562 * 11 9 7 13 13 H 1.48507 * 109.46730 * 120.00419 * 11 9 7 14 14 H 1.48503 * 109.47202 * 240.00123 * 11 9 7 15 15 N 1.46505 * 109.46943 * 240.00183 * 2 1 3 16 16 C 1.34779 * 120.00130 * 84.99890 * 15 2 1 17 17 O 1.21611 * 119.99487 * 359.97438 * 16 15 2 18 18 C 1.47419 * 120.00179 * 180.02562 * 16 15 2 19 19 C 1.41292 * 126.41693 * 359.68184 * 18 16 15 20 20 N 1.30444 * 108.02268 * 179.86125 * 19 18 16 21 21 N 1.39934 * 108.90070 * 0.40788 * 20 19 18 22 22 C 1.46496 * 125.75468 * 179.74090 * 21 20 19 23 23 C 1.53783 * 113.61173 * 194.13752 * 22 21 20 24 24 C 1.53953 * 87.02082 * 220.04654 * 23 22 21 25 25 C 1.53780 * 113.61644 * 96.53155 * 22 21 20 26 26 C 1.34261 * 108.49106 * 359.74037 * 21 20 19 27 27 H 1.08997 * 109.47389 * 60.00039 * 1 2 3 28 28 H 1.09008 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47073 * 299.99625 * 1 2 3 30 30 H 1.08996 * 109.47393 * 295.00214 * 4 2 1 31 31 H 1.09000 * 109.46830 * 54.99970 * 4 2 1 32 32 H 1.08999 * 109.46905 * 94.57756 * 6 5 4 33 33 H 1.08993 * 109.47030 * 214.58119 * 6 5 4 34 34 H 1.09002 * 109.47028 * 334.57936 * 6 5 4 35 35 H 0.96994 * 119.99639 * 179.97438 * 10 9 7 36 36 H 0.96997 * 120.00276 * 265.00353 * 15 2 1 37 37 H 1.07995 * 125.98388 * 0.02562 * 19 18 16 38 38 H 1.08993 * 112.85161 * 325.32943 * 22 21 20 39 39 H 1.09000 * 113.61627 * 334.56868 * 23 22 21 40 40 H 1.09000 * 113.61637 * 105.46838 * 23 22 21 41 41 H 1.09008 * 113.53623 * 270.81342 * 24 23 22 42 42 H 1.09000 * 113.74656 * 139.94502 * 24 23 22 43 43 H 1.09003 * 113.61466 * 254.52714 * 25 22 21 44 44 H 1.09001 * 113.61420 * 25.42748 * 25 22 21 45 45 H 1.07997 * 126.29289 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1259 -1.9920 0.5610 7 6 4.2800 0.1648 1.7239 8 1 3.8836 0.8066 2.4967 9 6 5.5798 0.3445 1.2713 10 7 5.9916 -0.2793 0.1879 11 14 6.7445 1.4719 2.1996 12 1 6.0435 2.0487 3.3748 13 1 7.9238 0.6951 2.6593 14 1 7.1925 2.5676 1.3030 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8573 1.1616 -2.4118 18 6 2.6378 -0.7133 -3.5611 19 6 3.0162 -2.0717 -3.6497 20 7 3.3896 -2.3074 -4.8771 21 7 3.2787 -1.1264 -5.6194 22 6 3.6078 -0.9732 -7.0386 23 6 3.7149 0.4925 -7.4914 24 6 2.9985 0.0616 -8.7842 25 6 2.3899 -1.0923 -7.9699 26 6 2.8197 -0.1572 -4.8115 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7517 -0.1585 2.1369 31 1 1.6055 -1.7198 1.2950 32 1 4.3540 -1.7639 -0.4802 33 1 5.0468 -2.2394 1.0889 34 1 3.4424 -2.8399 0.6058 35 1 6.8998 -0.1534 -0.1285 36 1 2.2490 -1.6317 -1.1528 37 1 2.9969 -2.7897 -2.8432 38 1 4.4539 -1.5879 -7.3456 39 1 3.1338 1.1822 -6.8793 40 1 4.7402 0.8268 -7.6500 41 1 3.6786 -0.2692 -9.5692 42 1 2.2614 0.7822 -9.1386 43 1 2.3469 -2.0357 -8.5142 44 1 1.4458 -0.8367 -7.4888 45 1 2.6275 0.8687 -5.0890 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754311176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:48 Heat of formation + Delta-G solvation = 63.113236 kcal Electronic energy + Delta-G solvation = -25722.665594 eV Core-core repulsion = 22163.575649 eV Total energy + Delta-G solvation = -3559.089944 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.180 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.49743 -40.38270 -39.28887 -37.90390 -35.66806 -33.33708 -32.71038 -31.89313 -30.84101 -27.93186 -27.36278 -26.82634 -26.49215 -24.34722 -23.18074 -22.33687 -21.64640 -21.02686 -20.17747 -19.13785 -18.71931 -17.16089 -17.04225 -16.78230 -16.61161 -16.15104 -15.69742 -15.46488 -15.35717 -15.10415 -14.82231 -14.46529 -14.03378 -13.92062 -13.68691 -13.44775 -13.37811 -13.18094 -13.04254 -12.82839 -12.63729 -12.49931 -12.37779 -12.24984 -12.08302 -11.98864 -11.77985 -11.65761 -11.64215 -11.47504 -10.77511 -10.60819 -10.52105 -9.95297 -9.53088 -8.66864 -7.78132 -5.24458 0.54974 1.19414 1.38114 1.43639 1.45888 1.54783 2.45724 2.54365 2.68136 3.18578 3.36019 3.45147 3.69612 3.75388 3.76932 3.78227 3.82148 4.14043 4.28390 4.36781 4.46988 4.51213 4.59109 4.63149 4.71828 4.77945 4.83203 4.88976 4.91719 4.93640 4.97104 5.02896 5.06142 5.26259 5.31192 5.40664 5.43332 5.45838 5.69176 5.81269 5.86345 5.90378 6.38228 6.52298 6.83013 7.21911 7.49937 7.94555 8.35193 9.23817 Molecular weight = 306.18amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.003927 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.882767 B = 7128.766779 C = 7985.674087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.124 3.876 3 H 0.036 0.964 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.173 3.827 7 C -0.258 4.258 8 H 0.067 0.933 9 C -0.049 4.049 10 N -0.928 5.928 11 Si 0.957 3.043 12 H -0.266 1.266 13 H -0.291 1.291 14 H -0.301 1.301 15 N -0.689 5.689 16 C 0.590 3.410 17 O -0.605 6.605 18 C -0.308 4.308 19 C 0.086 3.914 20 N -0.318 5.318 21 N -0.345 5.345 22 C 0.112 3.888 23 C -0.149 4.149 24 C -0.119 4.119 25 C -0.142 4.142 26 C 0.125 3.875 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.013 0.987 33 H 0.009 0.991 34 H 0.037 0.963 35 H 0.242 0.758 36 H 0.401 0.599 37 H 0.203 0.797 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.395 -4.063 -15.759 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.055 0.945 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.029 3.971 7 C -0.388 4.388 8 H 0.085 0.915 9 C -0.245 4.245 10 N -0.575 5.575 11 Si 0.787 3.213 12 H -0.191 1.191 13 H -0.218 1.218 14 H -0.229 1.229 15 N -0.337 5.337 16 C 0.379 3.621 17 O -0.489 6.489 18 C -0.323 4.323 19 C -0.101 4.101 20 N -0.138 5.138 21 N -0.123 5.123 22 C 0.012 3.988 23 C -0.188 4.188 24 C -0.157 4.157 25 C -0.181 4.181 26 C -0.028 4.028 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.031 0.969 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.237 0.763 37 H 0.219 0.781 38 H 0.149 0.851 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.110 0.890 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -8.960 -4.174 -16.772 19.468 hybrid contribution 1.024 1.009 1.169 1.853 sum -7.936 -3.165 -15.603 17.789 Atomic orbital electron populations 1.22020 0.93718 1.02793 1.01852 1.21669 0.94008 0.96421 0.86273 0.94513 1.21385 0.83228 0.99297 0.94580 1.44088 1.00887 1.20437 1.67926 1.20640 0.94225 0.86148 0.96122 1.19507 0.95002 1.10564 1.13753 0.91499 1.25674 1.00502 1.00908 0.97366 1.70214 1.16686 1.47215 1.23398 0.85341 0.79334 0.78391 0.78231 1.19066 1.21754 1.22883 1.45508 1.65800 1.13774 1.08623 1.17512 0.76059 0.85353 0.83151 1.90657 1.54662 1.17306 1.86278 1.20331 1.20745 0.96057 0.95193 1.24261 0.95503 0.95222 0.95163 1.77049 1.25247 1.06461 1.05000 1.48871 1.47413 1.05856 1.10136 1.23663 1.01144 1.00889 0.73076 1.23544 1.03676 0.93244 0.98316 1.22716 1.00145 0.97318 0.95499 1.23421 0.96497 1.01375 0.96794 1.22977 0.94212 0.96147 0.89464 0.94274 0.90622 0.90407 0.91696 0.90527 0.96922 0.97178 0.94432 0.94908 0.76335 0.78052 0.85094 0.89196 0.88901 0.87498 0.88970 0.89244 0.90227 0.78690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.48 71.98 0.68 -3.56 16 2 C 0.12 4.71 2.88 44.99 0.13 4.84 16 3 H 0.04 1.76 7.58 -2.39 -0.02 1.74 16 4 C 0.14 5.32 5.33 86.38 0.46 5.78 16 5 N -0.61 -29.32 2.78 -726.95 -2.02 -31.34 16 6 C 0.17 8.03 7.61 127.77 0.97 9.00 16 7 C -0.26 -14.17 9.66 84.03 0.81 -13.36 16 8 H 0.07 3.61 7.85 -2.91 -0.02 3.59 16 9 C -0.05 -2.80 5.13 84.86 0.44 -2.37 16 10 N -0.93 -55.56 10.66 21.65 0.23 -55.33 16 11 Si 0.96 46.62 29.57 68.60 2.03 48.65 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 13 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 14 H -0.30 -15.03 7.11 99.48 0.71 -14.32 16 15 N -0.69 -26.17 4.40 -445.79 -1.96 -28.13 16 16 C 0.59 24.61 7.78 86.66 0.67 25.28 16 17 O -0.61 -29.23 16.56 -4.06 -0.07 -29.29 16 18 C -0.31 -11.03 6.13 -20.15 -0.12 -11.15 16 19 C 0.09 2.74 11.50 85.65 0.99 3.73 16 20 N -0.32 -10.00 12.50 -56.28 -0.70 -10.70 16 21 N -0.34 -9.38 3.77 -323.26 -1.22 -10.60 16 22 C 0.11 2.05 5.01 45.52 0.23 2.28 16 23 C -0.15 -2.07 7.45 31.18 0.23 -1.84 16 24 C -0.12 -1.10 8.09 31.18 0.25 -0.85 16 25 C -0.14 -1.95 7.88 31.12 0.25 -1.71 16 26 C 0.12 3.81 10.50 84.28 0.88 4.70 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.06 2.36 8.03 -2.39 -0.02 2.34 16 31 H 0.08 2.36 7.86 -2.39 -0.02 2.34 16 32 H 0.01 0.64 6.90 -2.39 -0.02 0.62 16 33 H 0.01 0.50 7.30 -2.39 -0.02 0.48 16 34 H 0.04 1.39 7.84 -2.39 -0.02 1.37 16 35 H 0.24 14.31 8.31 -92.71 -0.77 13.54 16 36 H 0.40 13.67 6.13 -92.71 -0.57 13.10 16 37 H 0.20 5.46 7.50 -2.91 -0.02 5.44 16 38 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.09 1.37 6.29 -2.39 -0.02 1.35 16 40 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 44 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.20 5.22 6.66 -2.91 -0.02 5.20 16 Total: -1.00 -75.69 367.52 3.58 -72.11 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.42 Total: 23.86 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: 6.87 Total: 20.78 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -5.68 Total: -136.11 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.07 Total: -29.29 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -75.69 3.58 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754311176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.226 kcal (2) G-P(sol) polarization free energy of solvation -75.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds