Wall clock time and date at job start Tue Mar 31 2020 09:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00078 * 2 1 4 4 H 1.48494 * 109.47156 * 269.99417 * 3 2 1 5 5 H 1.48496 * 109.47242 * 30.00094 * 3 2 1 6 6 H 1.48507 * 109.47138 * 149.99763 * 3 2 1 7 7 C 1.38812 * 119.99435 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00451 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99911 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00233 * 174.22574 * 9 7 2 11 11 C 1.53005 * 110.01855 * 301.45142 * 10 9 7 12 12 N 1.46500 * 109.46919 * 303.90519 * 11 10 9 13 13 C 1.34778 * 119.99552 * 175.12863 * 12 11 10 14 14 O 1.21281 * 120.00214 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99416 * 179.97438 * 13 12 11 16 16 C 1.52301 * 115.91071 * 248.28269 * 15 13 12 17 17 C 1.52074 * 115.92293 * 179.97438 * 15 13 12 18 18 H 1.08998 * 116.54297 * 359.04088 * 17 15 13 19 19 C 1.52718 * 120.51871 * 210.73705 * 17 15 13 20 20 C 1.52879 * 110.15380 * 21.47453 * 19 17 15 21 21 C 1.53298 * 108.58199 * 305.47850 * 20 19 17 22 22 C 1.52109 * 114.30430 * 33.77911 * 15 13 12 23 23 C 1.54268 * 110.07478 * 62.87016 * 10 9 7 24 24 C 1.54889 * 104.19312 * 95.69371 * 23 10 9 25 25 C 1.54891 * 102.74982 * 37.94672 * 24 23 10 26 26 C 1.53878 * 110.03108 * 180.02562 * 10 9 7 27 27 H 0.97002 * 119.99694 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99551 * 354.22553 * 9 7 2 29 29 H 1.08999 * 109.47110 * 183.90084 * 11 10 9 30 30 H 1.09005 * 109.46733 * 63.90315 * 11 10 9 31 31 H 0.96998 * 120.00400 * 355.12037 * 12 11 10 32 32 H 1.09003 * 117.53518 * 146.10499 * 16 15 13 33 33 H 1.08999 * 117.54121 * 0.85193 * 16 15 13 34 34 H 1.08996 * 109.35508 * 261.26235 * 19 17 15 35 35 H 1.09001 * 109.24329 * 141.61200 * 19 17 15 36 36 H 1.08996 * 109.61548 * 185.74661 * 20 19 17 37 37 H 1.08996 * 109.61445 * 65.20650 * 20 19 17 38 38 H 1.08999 * 109.62018 * 194.17567 * 21 20 19 39 39 H 1.09004 * 109.61684 * 314.53466 * 21 20 19 40 40 H 1.08995 * 109.13010 * 45.89120 * 22 15 13 41 41 H 1.09007 * 109.42469 * 286.41413 * 22 15 13 42 42 H 1.08998 * 110.49001 * 214.37530 * 23 10 9 43 43 H 1.09002 * 110.48547 * 337.01968 * 23 10 9 44 44 H 1.08995 * 110.76080 * 279.62387 * 24 23 10 45 45 H 1.09008 * 110.74961 * 156.25951 * 24 23 10 46 46 H 1.08996 * 110.48722 * 203.37549 * 25 24 23 47 47 H 1.09003 * 110.59487 * 80.79032 * 25 24 23 48 48 H 1.08992 * 110.03336 * 359.94677 * 26 10 9 49 49 H 1.09000 * 110.02936 * 121.33896 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1119 -2.4646 0.1293 11 6 3.7237 -3.1653 1.4328 12 7 3.9653 -2.2642 2.5623 13 6 3.6034 -2.6323 3.8073 14 8 3.0773 -3.7092 3.9925 15 6 3.8525 -1.7055 4.9693 16 6 4.9012 -2.1647 5.9738 17 6 3.4073 -2.2132 6.3319 18 1 2.9321 -3.1939 6.3549 19 6 2.9446 -1.2359 7.4104 20 6 2.5069 0.0830 6.7733 21 6 3.6547 0.6107 5.9048 22 6 3.7303 -0.2280 4.6291 23 6 3.8049 -3.3795 -1.0743 24 6 4.9714 -3.1164 -2.0587 25 6 6.1885 -2.9625 -1.1132 26 6 5.6275 -2.1995 0.1036 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3665 -0.0835 29 1 4.3234 -4.0675 1.5529 30 1 2.6674 -3.4328 1.4009 31 1 4.3859 -1.4028 2.4142 32 1 5.5096 -1.3978 6.4533 33 1 5.4041 -3.1121 5.7800 34 1 3.7647 -1.0479 8.1033 35 1 2.1055 -1.6709 7.9533 36 1 2.2757 0.8076 7.5541 37 1 1.6262 -0.0845 6.1535 38 1 3.4691 1.6533 5.6469 39 1 4.5942 0.5307 6.4519 40 1 2.8264 -0.0706 4.0408 41 1 4.5971 0.0826 4.0457 42 1 3.7944 -4.4249 -0.7659 43 1 2.8529 -3.1053 -1.5288 44 1 4.8017 -2.1991 -2.6224 45 1 5.1086 -3.9639 -2.7303 46 1 6.9761 -2.3841 -1.5961 47 1 6.5651 -3.9397 -0.8107 48 1 5.8181 -1.1319 -0.0051 49 1 6.0867 -2.5692 1.0205 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753668921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:07 Heat of formation + Delta-G solvation = -23.966532 kcal Electronic energy + Delta-G solvation = -26999.734714 eV Core-core repulsion = 23540.409052 eV Total energy + Delta-G solvation = -3459.325663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.48067 -38.84629 -37.52942 -34.18464 -33.36740 -32.98156 -31.17811 -30.66204 -28.36668 -28.24442 -25.26207 -24.43020 -23.24691 -22.61101 -21.38012 -20.60010 -19.89766 -18.79684 -18.08663 -17.57416 -17.23670 -15.66661 -15.31261 -15.05230 -14.61919 -14.40383 -14.36926 -14.16323 -13.89555 -13.64987 -13.33177 -13.05588 -12.99124 -12.66896 -12.32638 -12.19839 -11.91330 -11.82847 -11.78729 -11.27784 -10.98404 -10.87105 -10.83393 -10.81666 -10.67612 -10.50693 -10.46661 -10.38333 -10.23438 -9.99895 -9.88922 -9.61396 -9.56001 -9.26936 -8.92556 -8.41332 -7.32110 -5.78913 -3.15904 2.93162 3.29680 3.33506 3.40856 3.66516 3.89391 4.54321 4.62719 4.69213 4.82678 4.93581 5.00312 5.05342 5.06212 5.07713 5.24023 5.31864 5.40188 5.47229 5.52830 5.55923 5.64137 5.68611 5.75575 5.83703 5.85119 5.85942 5.92630 5.99039 6.07958 6.09586 6.11709 6.18733 6.21031 6.22135 6.25443 6.35840 6.37399 6.43531 6.47406 6.49555 6.69439 6.75488 6.95539 7.08588 7.97264 8.07902 8.39547 8.74864 9.16732 9.88479 10.07283 11.39133 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.005663 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.837763 B = 4943.056087 C = 6293.542332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.195 3.805 11 C 0.121 3.879 12 N -0.697 5.697 13 C 0.543 3.457 14 O -0.554 6.554 15 C -0.139 4.139 16 C -0.158 4.158 17 C -0.115 4.115 18 H 0.115 0.885 19 C -0.087 4.087 20 C -0.123 4.123 21 C -0.117 4.117 22 C -0.087 4.087 23 C -0.130 4.130 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.129 4.129 27 H 0.258 0.742 28 H 0.360 0.640 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.398 0.602 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.212 -1.556 8.961 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.187 4.187 3 Si 0.710 3.290 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.203 1.203 7 C -0.367 4.367 8 H 0.109 0.891 9 N -0.379 5.379 10 C 0.103 3.897 11 C -0.005 4.005 12 N -0.346 5.346 13 C 0.328 3.672 14 O -0.433 6.433 15 C -0.142 4.142 16 C -0.195 4.195 17 C -0.134 4.134 18 H 0.133 0.867 19 C -0.124 4.124 20 C -0.160 4.160 21 C -0.155 4.155 22 C -0.124 4.124 23 C -0.171 4.171 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.167 4.167 27 H 0.069 0.931 28 H 0.194 0.806 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.233 0.767 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.079 0.921 48 H 0.083 0.917 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 12.580 -2.376 9.078 15.694 hybrid contribution 0.638 1.721 -0.270 1.855 sum 13.218 -0.655 8.808 15.897 Atomic orbital electron populations 1.69700 1.05090 1.25659 1.57311 1.24648 0.95093 0.96917 1.02081 0.86654 0.79185 0.85510 0.77697 1.21310 1.21933 1.20342 1.18932 0.80426 0.94563 1.42757 0.89140 1.42894 1.04065 1.02051 1.88876 1.20420 0.89676 0.87671 0.91899 1.21859 1.01734 0.91259 0.85666 1.45637 1.61260 1.21501 1.06176 1.19516 0.77836 0.86339 0.83483 1.90639 1.43778 1.23856 1.84989 1.21068 1.06790 0.95755 0.90561 1.23162 0.92042 1.02617 1.01690 1.22260 0.96473 1.01147 0.93490 0.86687 1.21069 1.00812 0.94539 0.96003 1.21595 0.98822 0.96400 0.99194 1.21563 0.98738 0.99142 0.96037 1.20871 1.03199 0.90292 0.98044 1.22798 0.99621 0.98283 0.96353 1.22405 0.94835 1.01022 0.97304 1.22293 0.97657 0.99696 0.96182 1.22456 0.95534 1.00448 0.98242 0.93132 0.80630 0.93061 0.90946 0.76697 0.88115 0.88731 0.91612 0.91433 0.91906 0.91213 0.91512 0.91964 0.90149 0.91378 0.92601 0.89784 0.91509 0.92485 0.92363 0.92070 0.91726 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.47 13.97 55.49 0.78 -27.69 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.03 27.68 -169.99 -4.71 16.32 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.04 6.61 56.52 0.37 -5.67 16 7 C -0.24 -6.19 8.87 -15.06 -0.13 -6.32 16 8 H 0.09 2.62 7.46 -52.49 -0.39 2.23 16 9 N -0.74 -15.58 4.55 -46.20 -0.21 -15.79 16 10 C 0.19 3.41 0.68 -130.70 -0.09 3.32 16 11 C 0.12 2.23 3.99 -4.04 -0.02 2.21 16 12 N -0.70 -12.34 4.99 -60.29 -0.30 -12.64 16 13 C 0.54 9.99 7.26 -10.98 -0.08 9.91 16 14 O -0.55 -12.02 16.04 5.56 0.09 -11.94 16 15 C -0.14 -2.04 2.48 -156.94 -0.39 -2.43 16 16 C -0.16 -1.90 9.28 -26.73 -0.25 -2.15 16 17 C -0.12 -1.55 5.68 -90.87 -0.52 -2.06 16 18 H 0.12 1.75 7.45 -51.93 -0.39 1.36 16 19 C -0.09 -0.95 5.83 -26.94 -0.16 -1.11 16 20 C -0.12 -1.40 5.93 -26.64 -0.16 -1.56 16 21 C -0.12 -1.34 5.69 -26.65 -0.15 -1.49 16 22 C -0.09 -1.21 4.72 -27.26 -0.13 -1.33 16 23 C -0.13 -2.20 5.94 -25.07 -0.15 -2.35 16 24 C -0.12 -1.68 6.91 -24.74 -0.17 -1.85 16 25 C -0.12 -1.53 6.83 -25.11 -0.17 -1.70 16 26 C -0.13 -1.84 5.80 -25.65 -0.15 -1.99 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.36 7.54 5.20 -40.82 -0.21 7.33 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.60 7.50 -51.93 -0.39 1.21 16 31 H 0.40 6.61 6.94 -40.82 -0.28 6.33 16 32 H 0.10 1.01 7.27 -51.93 -0.38 0.63 16 33 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.61 8.06 -51.93 -0.42 0.20 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.62 7.12 -51.93 -0.37 0.25 16 40 H 0.08 1.34 8.13 -51.93 -0.42 0.92 16 41 H 0.07 0.87 7.77 -51.93 -0.40 0.47 16 42 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 43 H 0.08 1.66 7.11 -51.93 -0.37 1.29 16 44 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.06 0.93 7.44 -51.93 -0.39 0.54 16 49 H 0.06 0.85 7.55 -51.93 -0.39 0.46 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -30.93 371.94 -10.15 -41.07 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -8.60 Total: 15.82 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -2.80 Total: -10.76 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.26 Total: -56.12 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.71 Total: 16.32 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.93 -10.15 -41.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.107 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds