Wall clock time and date at job start Tue Mar 31 2020 09:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86794 * 120.00078 * 2 1 4 4 H 1.48494 * 109.47156 * 269.99417 * 3 2 1 5 5 H 1.48496 * 109.47242 * 30.00094 * 3 2 1 6 6 H 1.48507 * 109.47138 * 149.99763 * 3 2 1 7 7 C 1.38812 * 119.99435 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00451 * 0.02562 * 7 2 1 9 9 N 1.36942 * 119.99911 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00233 * 174.22574 * 9 7 2 11 11 C 1.53005 * 110.01855 * 301.45142 * 10 9 7 12 12 N 1.46500 * 109.46919 * 303.90519 * 11 10 9 13 13 C 1.34778 * 119.99552 * 175.12863 * 12 11 10 14 14 O 1.21281 * 120.00214 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99416 * 179.97438 * 13 12 11 16 16 C 1.52301 * 115.91071 * 248.28269 * 15 13 12 17 17 C 1.52074 * 115.92293 * 179.97438 * 15 13 12 18 18 H 1.08998 * 116.54297 * 359.04088 * 17 15 13 19 19 C 1.52718 * 120.51871 * 210.73705 * 17 15 13 20 20 C 1.52879 * 110.15380 * 21.47453 * 19 17 15 21 21 C 1.53298 * 108.58199 * 305.47850 * 20 19 17 22 22 C 1.52109 * 114.30430 * 33.77911 * 15 13 12 23 23 C 1.54268 * 110.07478 * 62.87016 * 10 9 7 24 24 C 1.54889 * 104.19312 * 95.69371 * 23 10 9 25 25 C 1.54891 * 102.74982 * 37.94672 * 24 23 10 26 26 C 1.53878 * 110.03108 * 180.02562 * 10 9 7 27 27 H 0.97002 * 119.99694 * 0.02562 * 1 2 3 28 28 H 0.97007 * 119.99551 * 354.22553 * 9 7 2 29 29 H 1.08999 * 109.47110 * 183.90084 * 11 10 9 30 30 H 1.09005 * 109.46733 * 63.90315 * 11 10 9 31 31 H 0.96998 * 120.00400 * 355.12037 * 12 11 10 32 32 H 1.09003 * 117.53518 * 146.10499 * 16 15 13 33 33 H 1.08999 * 117.54121 * 0.85193 * 16 15 13 34 34 H 1.08996 * 109.35508 * 261.26235 * 19 17 15 35 35 H 1.09001 * 109.24329 * 141.61200 * 19 17 15 36 36 H 1.08996 * 109.61548 * 185.74661 * 20 19 17 37 37 H 1.08996 * 109.61445 * 65.20650 * 20 19 17 38 38 H 1.08999 * 109.62018 * 194.17567 * 21 20 19 39 39 H 1.09004 * 109.61684 * 314.53466 * 21 20 19 40 40 H 1.08995 * 109.13010 * 45.89120 * 22 15 13 41 41 H 1.09007 * 109.42469 * 286.41413 * 22 15 13 42 42 H 1.08998 * 110.49001 * 214.37530 * 23 10 9 43 43 H 1.09002 * 110.48547 * 337.01968 * 23 10 9 44 44 H 1.08995 * 110.76080 * 279.62387 * 24 23 10 45 45 H 1.09008 * 110.74961 * 156.25951 * 24 23 10 46 46 H 1.08996 * 110.48722 * 203.37549 * 25 24 23 47 47 H 1.09003 * 110.59487 * 80.79032 * 25 24 23 48 48 H 1.08992 * 110.03336 * 359.94677 * 26 10 9 49 49 H 1.09000 * 110.02936 * 121.33896 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0011 10 6 4.1119 -2.4646 0.1293 11 6 3.7237 -3.1653 1.4328 12 7 3.9653 -2.2642 2.5623 13 6 3.6034 -2.6323 3.8073 14 8 3.0773 -3.7092 3.9925 15 6 3.8525 -1.7055 4.9693 16 6 4.9012 -2.1647 5.9738 17 6 3.4073 -2.2132 6.3319 18 1 2.9321 -3.1939 6.3549 19 6 2.9446 -1.2359 7.4104 20 6 2.5069 0.0830 6.7733 21 6 3.6547 0.6107 5.9048 22 6 3.7303 -0.2280 4.6291 23 6 3.8049 -3.3795 -1.0743 24 6 4.9714 -3.1164 -2.0587 25 6 6.1885 -2.9625 -1.1132 26 6 5.6275 -2.1995 0.1036 27 1 -0.4850 0.8401 -0.0004 28 1 3.8646 -0.3665 -0.0835 29 1 4.3234 -4.0675 1.5529 30 1 2.6674 -3.4328 1.4009 31 1 4.3859 -1.4028 2.4142 32 1 5.5096 -1.3978 6.4533 33 1 5.4041 -3.1121 5.7800 34 1 3.7647 -1.0479 8.1033 35 1 2.1055 -1.6709 7.9533 36 1 2.2757 0.8076 7.5541 37 1 1.6262 -0.0845 6.1535 38 1 3.4691 1.6533 5.6469 39 1 4.5942 0.5307 6.4519 40 1 2.8264 -0.0706 4.0408 41 1 4.5971 0.0826 4.0457 42 1 3.7944 -4.4249 -0.7659 43 1 2.8529 -3.1053 -1.5288 44 1 4.8017 -2.1991 -2.6224 45 1 5.1086 -3.9639 -2.7303 46 1 6.9761 -2.3841 -1.5961 47 1 6.5651 -3.9397 -0.8107 48 1 5.8181 -1.1319 -0.0051 49 1 6.0867 -2.5692 1.0205 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753668921.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:29:06 Heat of formation + Delta-G solvation = -43.236635 kcal Electronic energy + Delta-G solvation = -27000.570329 eV Core-core repulsion = 23540.409052 eV Total energy + Delta-G solvation = -3460.161277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.73023 -40.20536 -38.88519 -35.66572 -35.20735 -33.99034 -32.93356 -31.87198 -29.78361 -29.61357 -26.61218 -25.58738 -24.91764 -23.94985 -22.40432 -21.82713 -21.16340 -20.27026 -19.53389 -19.31495 -18.47415 -17.19227 -16.75185 -16.38367 -16.21666 -15.93228 -15.56035 -15.34013 -14.88926 -14.82701 -14.80620 -14.52286 -14.29314 -14.12877 -13.75918 -13.54549 -13.44853 -13.04613 -12.94776 -12.87190 -12.49333 -12.29744 -11.97751 -11.93895 -11.93652 -11.88727 -11.77141 -11.63346 -11.48228 -11.45826 -11.34109 -10.99059 -10.91755 -10.66479 -10.59729 -9.97627 -9.29209 -7.97501 -5.31841 1.35701 1.41019 1.48260 1.53938 2.29225 2.50579 2.77295 3.31256 3.49990 3.55902 3.67139 3.73115 3.78161 3.86961 3.91078 4.04948 4.10853 4.28296 4.32485 4.39919 4.51211 4.52600 4.58213 4.62048 4.68053 4.72611 4.78787 4.82646 4.91018 4.94690 4.98073 5.00745 5.08132 5.13624 5.16870 5.22542 5.24344 5.24445 5.31750 5.35163 5.37006 5.45922 5.49427 5.54725 5.62328 5.85041 6.25346 6.62465 7.12451 7.29014 7.85648 8.06182 9.24538 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.011969 B = 0.005663 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.837763 B = 4943.056087 C = 6293.542332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.066 4.066 3 Si 0.950 3.050 4 H -0.284 1.284 5 H -0.305 1.305 6 H -0.237 1.237 7 C -0.206 4.206 8 H 0.045 0.955 9 N -0.732 5.732 10 C 0.189 3.811 11 C 0.128 3.872 12 N -0.692 5.692 13 C 0.532 3.468 14 O -0.598 6.598 15 C -0.156 4.156 16 C -0.125 4.125 17 C -0.126 4.126 18 H 0.087 0.913 19 C -0.081 4.081 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.083 4.083 23 C -0.133 4.133 24 C -0.113 4.113 25 C -0.111 4.111 26 C -0.122 4.122 27 H 0.253 0.747 28 H 0.367 0.633 29 H 0.067 0.933 30 H 0.021 0.979 31 H 0.406 0.594 32 H 0.136 0.864 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.036 0.964 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.038 0.962 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.042 0.958 44 H 0.055 0.945 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.078 0.922 48 H 0.072 0.928 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.982 -0.081 10.288 20.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.257 4.257 3 Si 0.778 3.222 4 H -0.210 1.210 5 H -0.233 1.233 6 H -0.161 1.161 7 C -0.338 4.338 8 H 0.063 0.937 9 N -0.375 5.375 10 C 0.099 3.901 11 C 0.001 3.999 12 N -0.341 5.341 13 C 0.319 3.681 14 O -0.480 6.480 15 C -0.159 4.159 16 C -0.162 4.162 17 C -0.144 4.144 18 H 0.105 0.895 19 C -0.118 4.118 20 C -0.162 4.162 21 C -0.149 4.149 22 C -0.121 4.121 23 C -0.173 4.173 24 C -0.151 4.151 25 C -0.148 4.148 26 C -0.160 4.160 27 H 0.062 0.938 28 H 0.202 0.798 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.242 0.758 32 H 0.154 0.846 33 H 0.110 0.890 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.109 0.891 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.061 0.939 44 H 0.074 0.926 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.097 0.903 48 H 0.091 0.909 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.430 -0.916 10.398 20.317 hybrid contribution -0.935 1.059 -0.712 1.582 sum 16.495 0.143 9.686 19.129 Atomic orbital electron populations 1.69919 1.07465 1.26253 1.60357 1.25476 0.95908 1.01164 1.03146 0.85483 0.79164 0.79697 0.77871 1.21027 1.23275 1.16101 1.18713 0.82632 0.92593 1.39825 0.93716 1.42799 1.02153 1.03907 1.88658 1.20701 0.92128 0.86046 0.91220 1.21724 0.98885 0.92465 0.86794 1.45621 1.60954 1.21589 1.05896 1.20334 0.76765 0.86395 0.84558 1.90610 1.45636 1.26024 1.85712 1.21053 1.09926 0.95359 0.89553 1.23294 0.91139 1.03170 0.98570 1.22330 0.98089 1.00609 0.93411 0.89483 1.21094 1.01943 0.93417 0.95358 1.21613 0.97782 0.97346 0.99458 1.21580 0.99912 0.98719 0.94713 1.20846 1.01784 0.90143 0.99334 1.22757 0.99090 0.98676 0.96781 1.22378 0.94177 1.01350 0.97154 1.22282 0.97094 1.00810 0.94637 1.22416 0.91972 1.01463 1.00115 0.93812 0.79834 0.91443 0.96054 0.75763 0.84565 0.88953 0.88594 0.91329 0.89586 0.94477 0.90882 0.89069 0.94274 0.89879 0.91620 0.93943 0.92592 0.90463 0.89979 0.90308 0.90905 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.09 13.97 21.65 0.30 -63.78 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.95 43.93 27.68 68.60 1.90 45.83 16 4 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 5 H -0.31 -14.73 7.11 99.48 0.71 -14.02 16 6 H -0.24 -9.27 6.61 99.48 0.66 -8.61 16 7 C -0.21 -11.34 8.87 84.03 0.75 -10.59 16 8 H 0.04 2.84 7.46 -2.91 -0.02 2.81 16 9 N -0.73 -31.08 4.55 -300.07 -1.37 -32.45 16 10 C 0.19 6.56 0.68 4.33 0.00 6.56 16 11 C 0.13 4.86 3.99 86.38 0.34 5.21 16 12 N -0.69 -24.70 4.99 -463.04 -2.31 -27.01 16 13 C 0.53 20.09 7.26 87.66 0.64 20.72 16 14 O -0.60 -27.37 16.04 -3.03 -0.05 -27.42 16 15 C -0.16 -4.46 2.48 -53.76 -0.13 -4.59 16 16 C -0.12 -2.63 9.28 30.60 0.28 -2.35 16 17 C -0.13 -3.26 5.68 -10.96 -0.06 -3.32 16 18 H 0.09 2.75 7.45 -2.39 -0.02 2.73 16 19 C -0.08 -1.58 5.83 30.46 0.18 -1.40 16 20 C -0.12 -2.60 5.93 30.65 0.18 -2.42 16 21 C -0.11 -2.21 5.69 30.65 0.17 -2.03 16 22 C -0.08 -2.20 4.72 30.25 0.14 -2.06 16 23 C -0.13 -4.54 5.94 31.67 0.19 -4.35 16 24 C -0.11 -2.97 6.91 31.89 0.22 -2.75 16 25 C -0.11 -2.34 6.83 31.64 0.22 -2.12 16 26 C -0.12 -3.07 5.80 31.29 0.18 -2.89 16 27 H 0.25 15.77 8.31 -92.71 -0.77 15.00 16 28 H 0.37 14.68 5.20 -92.70 -0.48 14.20 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.02 1.02 7.50 -2.38 -0.02 1.00 16 31 H 0.41 13.04 6.94 -92.71 -0.64 12.39 16 32 H 0.14 1.95 7.27 -2.39 -0.02 1.93 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.10 1.34 8.06 -2.39 -0.02 1.32 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.04 1.00 8.05 -2.39 -0.02 0.98 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.32 7.12 -2.39 -0.02 1.30 16 40 H 0.04 1.33 8.13 -2.39 -0.02 1.31 16 41 H 0.08 1.89 7.77 -2.38 -0.02 1.87 16 42 H 0.07 2.07 7.85 -2.39 -0.02 2.05 16 43 H 0.04 1.78 7.11 -2.39 -0.02 1.76 16 44 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.77 7.44 -2.39 -0.02 1.75 16 49 H 0.08 1.81 7.55 -2.39 -0.02 1.80 16 Total: -1.00 -74.78 371.94 2.00 -72.78 By element: Atomic # 1 Polarization: 44.06 SS G_CDS: -0.24 Total: 43.82 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 3.77 Total: -11.77 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -3.37 Total: -123.24 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.05 Total: -27.42 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.90 Total: 45.83 kcal Total: -74.78 2.00 -72.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753668921.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.544 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds