Wall clock time and date at job start Tue Mar 31 2020 09:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48504 * 109.46935 * 270.00059 * 3 2 1 5 5 H 1.48501 * 109.47224 * 30.00323 * 3 2 1 6 6 H 1.48498 * 109.46998 * 150.00456 * 3 2 1 7 7 C 1.38813 * 119.99797 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00198 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99501 * 179.97438 * 7 2 1 10 10 C 1.46505 * 119.99584 * 179.97438 * 9 7 2 11 11 H 1.08992 * 109.47276 * 325.00220 * 10 9 7 12 12 C 1.53002 * 109.46958 * 85.00133 * 10 9 7 13 13 C 1.52997 * 109.46978 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.47164 * 299.99874 * 13 12 10 15 15 H 1.08998 * 109.46505 * 299.99708 * 14 13 12 16 16 N 1.46500 * 109.47249 * 180.02562 * 14 13 12 17 17 C 1.34770 * 120.00256 * 84.99846 * 16 14 13 18 18 O 1.21283 * 120.00026 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99922 * 180.02562 * 17 16 14 20 20 C 1.52306 * 115.91218 * 248.28707 * 19 17 16 21 21 C 1.52074 * 115.92667 * 179.97438 * 19 17 16 22 22 H 1.08994 * 117.25712 * 359.36590 * 21 19 17 23 23 C 1.52706 * 120.52125 * 209.63501 * 21 19 17 24 24 C 1.52883 * 110.15208 * 21.47839 * 23 21 19 25 25 C 1.53297 * 108.57941 * 305.47252 * 24 23 21 26 26 C 1.52066 * 114.64064 * 33.38319 * 19 17 16 27 27 C 1.52997 * 109.47127 * 59.99836 * 14 13 12 28 28 C 1.52996 * 109.46998 * 204.99673 * 10 9 7 29 29 H 0.97001 * 119.99968 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00671 * 0.02562 * 9 7 2 31 31 H 1.09002 * 109.47097 * 299.99818 * 12 10 9 32 32 H 1.09001 * 109.47142 * 59.99782 * 12 10 9 33 33 H 1.09001 * 109.47375 * 59.99908 * 13 12 10 34 34 H 1.09000 * 109.47140 * 179.97438 * 13 12 10 35 35 H 0.97005 * 119.99374 * 264.99912 * 16 14 13 36 36 H 1.08996 * 117.53989 * 0.84766 * 20 19 17 37 37 H 1.08998 * 117.53664 * 146.10056 * 20 19 17 38 38 H 1.09001 * 109.35840 * 141.68195 * 23 21 19 39 39 H 1.08998 * 109.36285 * 261.26411 * 23 21 19 40 40 H 1.08995 * 109.62292 * 65.20232 * 24 23 21 41 41 H 1.09002 * 109.61751 * 185.56594 * 24 23 21 42 42 H 1.08998 * 109.61656 * 194.17657 * 25 24 23 43 43 H 1.09007 * 109.61892 * 314.53680 * 25 24 23 44 44 H 1.09006 * 109.26607 * 285.89186 * 26 19 17 45 45 H 1.09005 * 109.26850 * 45.35593 * 26 19 17 46 46 H 1.09002 * 109.47153 * 180.02562 * 27 14 13 47 47 H 1.09001 * 109.46832 * 60.00321 * 27 14 13 48 48 H 1.09004 * 109.47368 * 60.00227 * 28 10 9 49 49 H 1.09001 * 109.47372 * 300.00383 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5650 -3.2063 0.5887 12 6 4.2577 -2.9757 -1.4381 13 6 5.0221 -4.3010 -1.4380 14 6 6.4096 -4.0895 -0.8287 15 1 6.9570 -3.3544 -1.4185 16 7 7.1417 -5.3585 -0.8292 17 6 7.8239 -5.7424 -1.9263 18 8 7.8313 -5.0377 -2.9133 19 6 8.5766 -7.0480 -1.9269 20 6 10.0953 -6.9407 -1.9681 21 6 9.3132 -7.3902 -3.2126 22 1 9.2364 -6.6802 -4.0360 23 6 9.5250 -8.8463 -3.6210 24 6 8.5011 -9.7429 -2.9245 25 6 8.5876 -9.5006 -1.4133 26 6 7.9323 -8.1517 -1.1028 27 6 6.2640 -3.5847 0.6082 28 6 5.4995 -2.2587 0.6079 29 1 -0.4850 0.8401 0.0004 30 1 3.8647 -0.3621 -0.0007 31 1 3.2692 -3.1268 -1.8720 32 1 4.8048 -2.2402 -2.0279 33 1 4.4745 -5.0363 -0.8483 34 1 5.1254 -4.6609 -2.4617 35 1 7.1355 -5.9223 -0.0399 36 1 10.5298 -5.9411 -1.9796 37 1 10.6687 -7.6975 -1.4327 38 1 9.4107 -8.9389 -4.7011 39 1 10.5302 -9.1585 -3.3382 40 1 7.4995 -9.4978 -3.2778 41 1 8.7208 -10.7879 -3.1435 42 1 8.0585 -10.2935 -0.8847 43 1 9.6327 -9.4885 -1.1038 44 1 8.0818 -7.9435 -0.0433 45 1 6.8636 -8.1822 -1.3154 46 1 7.2525 -3.4336 1.0421 47 1 5.7165 -4.3199 1.1979 48 1 5.3959 -1.8991 1.6316 49 1 6.0466 -1.5233 0.0181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034732007.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:30 Heat of formation + Delta-G solvation = -30.994223 kcal Electronic energy + Delta-G solvation = -25676.399085 eV Core-core repulsion = 22216.768679 eV Total energy + Delta-G solvation = -3459.630406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.99310 -39.07618 -37.66698 -35.01210 -33.36904 -33.12112 -31.42475 -30.72234 -30.46830 -27.84117 -25.26157 -24.25589 -23.01870 -22.42294 -21.76270 -21.05210 -20.53797 -19.71561 -18.65334 -17.77646 -17.36267 -16.22630 -15.51514 -15.07692 -14.85879 -14.72192 -14.41559 -14.30735 -14.02480 -13.84096 -13.67770 -13.41687 -12.99902 -12.82307 -12.65092 -12.43943 -12.26603 -12.15097 -11.95402 -11.71728 -11.37637 -11.26233 -11.16248 -10.90631 -10.86579 -10.84731 -10.64011 -10.28229 -10.21197 -10.18051 -10.03083 -9.81441 -9.68604 -9.55164 -8.98911 -8.85899 -7.23853 -5.74774 -3.09875 2.41235 3.03180 3.39458 3.42844 3.47035 3.47342 4.19357 4.28896 4.39134 4.48474 4.61433 4.68283 4.81494 4.82935 4.89497 4.97962 5.09861 5.12465 5.14613 5.24009 5.39221 5.46081 5.48294 5.50532 5.53988 5.56375 5.63367 5.69751 5.71918 5.74315 5.78833 5.80565 5.85905 5.93406 5.94396 6.04538 6.12985 6.19319 6.22199 6.37417 6.47525 6.57571 6.65629 6.91304 7.06551 7.45486 8.02180 8.17853 8.44672 9.23515 9.96306 10.16409 11.43707 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.033574 B = 0.002570 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.783848 B =10890.731676 C =11015.529608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.182 3.818 11 H 0.055 0.945 12 C -0.132 4.132 13 C -0.123 4.123 14 C 0.144 3.856 15 H 0.086 0.914 16 N -0.721 5.721 17 C 0.545 3.455 18 O -0.539 6.539 19 C -0.144 4.144 20 C -0.158 4.158 21 C -0.114 4.114 22 H 0.117 0.883 23 C -0.090 4.090 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.083 4.083 27 C -0.118 4.118 28 C -0.124 4.124 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.398 0.602 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.391 -20.351 -1.298 30.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.073 3.927 11 H 0.073 0.927 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.041 3.959 15 H 0.104 0.896 16 N -0.371 5.371 17 C 0.330 3.670 18 O -0.415 6.415 19 C -0.147 4.147 20 C -0.195 4.195 21 C -0.132 4.132 22 H 0.135 0.865 23 C -0.127 4.127 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.121 4.121 27 C -0.157 4.157 28 C -0.163 4.163 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.232 0.768 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.087 0.913 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 22.130 -19.870 -1.986 29.808 hybrid contribution 0.440 1.072 0.369 1.216 sum 22.569 -18.798 -1.617 29.417 Atomic orbital electron populations 1.69703 1.05105 1.25769 1.57749 1.24676 0.95234 0.97208 1.02170 0.86546 0.79184 0.85007 0.77781 1.21125 1.21820 1.20322 1.19079 0.80630 0.94654 1.42715 0.89238 1.42796 1.03997 1.02077 1.90303 1.20211 0.90200 0.89091 0.93224 0.92729 1.22184 1.00018 0.94798 1.00306 1.21887 0.94622 0.99133 1.00616 1.21116 0.92750 0.84734 0.97345 0.89605 1.46092 1.51514 1.23391 1.16066 1.19622 0.78394 0.86065 0.82883 1.90705 1.62508 1.54957 1.33369 1.21096 0.94999 0.95255 1.03366 1.23231 0.90845 1.03341 1.02079 1.22291 1.01217 0.98143 0.91569 0.86500 1.21106 0.99210 0.91869 1.00536 1.21595 0.99955 0.99156 0.95289 1.21644 1.01037 0.96504 0.96490 1.20898 0.99903 0.92728 0.98564 1.21741 1.00464 0.98422 0.95049 1.21800 0.96891 0.95843 1.01724 0.93115 0.80706 0.91308 0.92622 0.92133 0.92254 0.76823 0.88542 0.87813 0.91281 0.91368 0.91476 0.91736 0.91353 0.91547 0.91308 0.90629 0.91841 0.91360 0.91293 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.59 13.97 55.49 0.78 -28.81 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.36 27.74 -169.99 -4.71 17.64 16 4 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 7 C -0.24 -6.80 10.41 -15.06 -0.16 -6.96 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.73 4.93 -53.43 -0.26 -17.99 16 10 C 0.18 3.43 2.77 -67.93 -0.19 3.24 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -2.36 5.50 -26.73 -0.15 -2.51 16 13 C -0.12 -1.82 5.49 -26.73 -0.15 -1.96 16 14 C 0.14 1.87 2.45 -67.93 -0.17 1.70 16 15 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 16 N -0.72 -7.79 4.97 -53.81 -0.27 -8.05 16 17 C 0.54 6.75 7.24 -10.99 -0.08 6.67 16 18 O -0.54 -8.93 15.73 5.55 0.09 -8.84 16 19 C -0.14 -1.31 2.49 -156.96 -0.39 -1.70 16 20 C -0.16 -1.25 9.21 -26.72 -0.25 -1.50 16 21 C -0.11 -1.02 5.71 -90.88 -0.52 -1.53 16 22 H 0.12 1.28 7.50 -51.93 -0.39 0.89 16 23 C -0.09 -0.60 5.81 -26.94 -0.16 -0.76 16 24 C -0.12 -0.76 5.92 -26.64 -0.16 -0.92 16 25 C -0.12 -0.68 5.71 -26.50 -0.15 -0.83 16 26 C -0.08 -0.57 4.71 -27.13 -0.13 -0.70 16 27 C -0.12 -1.40 5.39 -26.71 -0.14 -1.54 16 28 C -0.12 -1.86 5.39 -26.71 -0.14 -2.01 16 29 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 30 H 0.36 8.42 5.66 -40.82 -0.23 8.19 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.40 3.21 7.58 -40.82 -0.31 2.90 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.10 0.63 7.14 -51.93 -0.37 0.26 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.39 8.04 -51.93 -0.42 -0.03 16 40 H 0.07 0.49 8.03 -51.93 -0.42 0.07 16 41 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.34 7.01 -51.92 -0.36 -0.02 16 44 H 0.07 0.38 7.81 -51.93 -0.41 -0.03 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 374.43 15.07 5.64 5.64 Total: -1.00 -33.14 374.43 -10.56 -43.71 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -8.80 Total: 8.03 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -3.02 Total: -11.32 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.24 Total: -54.86 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: 0.09 Total: -8.84 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.14 -10.56 -43.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034732007.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.711 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds