Wall clock time and date at job start Tue Mar 31 2020 09:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 115.54948 * 2 1 4 4 C 1.50700 * 109.46958 * 279.61755 * 3 2 1 5 5 O 1.21278 * 120.00082 * 5.29785 * 4 3 2 6 6 N 1.34776 * 119.99711 * 185.29807 * 4 3 2 7 7 C 1.43507 * 122.55151 * 0.02562 * 6 4 3 8 8 C 1.51725 * 114.26293 * 122.91699 * 7 6 4 9 9 C 1.51142 * 111.89101 * 82.63013 * 8 7 6 10 10 H 1.08994 * 110.69221 * 33.99751 * 9 8 7 11 11 C 1.53416 * 110.93265 * 156.74600 * 9 8 7 12 12 N 1.46592 * 108.09458 * 102.75633 * 11 9 8 13 13 C 1.36937 * 125.31230 * 178.63311 * 12 11 9 14 14 H 1.07997 * 120.00265 * 0.02562 * 13 12 11 15 15 C 1.38819 * 119.99870 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99994 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99917 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47109 * 90.00191 * 17 15 13 19 19 H 1.48504 * 109.46845 * 210.00399 * 17 15 13 20 20 H 1.48504 * 109.47149 * 330.00150 * 17 15 13 21 21 C 1.46659 * 109.37226 * 358.65648 * 12 11 9 22 22 C 1.54048 * 106.93571 * 18.27615 * 21 12 11 23 23 H 1.09005 * 110.61328 * 92.13169 * 22 21 12 24 24 C 1.51844 * 109.44538 * 214.15435 * 22 21 12 25 25 C 1.49541 * 122.54846 * 179.97438 * 6 4 3 26 26 C 1.52996 * 117.51709 * 145.70287 * 2 1 3 27 27 C 1.52995 * 60.00300 * 107.47878 * 26 2 1 28 28 H 1.08997 * 109.47430 * 65.01325 * 1 2 3 29 29 H 1.09005 * 109.47250 * 185.01294 * 1 2 3 30 30 H 1.09001 * 109.47319 * 305.01281 * 1 2 3 31 31 H 1.08995 * 109.47015 * 159.61317 * 3 2 1 32 32 H 1.08998 * 109.47121 * 39.61791 * 3 2 1 33 33 H 1.08999 * 108.52552 * 244.15451 * 7 6 4 34 34 H 1.09000 * 108.52486 * 1.83350 * 7 6 4 35 35 H 1.08997 * 108.99782 * 203.26360 * 8 7 6 36 36 H 1.09006 * 108.99753 * 322.10039 * 8 7 6 37 37 H 1.09004 * 109.74072 * 343.09463 * 11 9 8 38 38 H 1.08997 * 109.74645 * 222.42567 * 11 9 8 39 39 H 0.97001 * 119.99914 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.97191 * 137.64949 * 21 12 11 41 41 H 1.09007 * 109.96999 * 258.91149 * 21 12 11 42 42 H 1.09005 * 109.00412 * 295.51771 * 24 22 21 43 43 H 1.08999 * 109.00949 * 54.37805 * 24 22 21 44 44 H 1.09004 * 110.26224 * 131.26147 * 25 6 4 45 45 H 1.08997 * 110.26316 * 9.16250 * 25 6 4 46 46 H 1.08998 * 117.49693 * 214.97181 * 26 2 1 47 47 H 1.09006 * 117.50300 * 359.97438 * 26 2 1 48 48 H 1.09002 * 117.49987 * 252.50995 * 27 26 2 49 49 H 1.08997 * 117.50105 * 107.48090 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.1924 1.9359 -1.4009 5 8 1.6293 1.3362 -2.2920 6 7 2.8203 3.0992 -1.6633 7 6 3.5037 3.8532 -0.6514 8 6 4.9669 4.1181 -0.9526 9 6 5.1477 5.3087 -1.8660 10 1 4.3870 6.0641 -1.6692 11 6 6.5493 5.9123 -1.7088 12 7 7.3605 5.4834 -2.8520 13 6 8.6625 5.8426 -3.0778 14 1 9.1718 6.4930 -2.3821 15 6 9.3282 5.3698 -4.2005 16 7 8.7078 4.5767 -5.0481 17 14 11.1046 5.8591 -4.5082 18 1 12.0084 4.8733 -3.8631 19 1 11.3643 5.8865 -5.9701 20 1 11.3530 7.2068 -3.9360 21 6 6.5599 4.6101 -3.7164 22 6 5.0824 4.8522 -3.3537 23 1 4.6531 5.6265 -3.9896 24 6 4.3073 3.5544 -3.4976 25 6 2.8590 3.7018 -3.0313 26 6 2.2369 -1.1210 0.7646 27 6 2.2365 -1.1208 -0.7654 28 1 -0.3634 0.4341 -0.9314 29 1 -0.3634 -1.0238 0.0898 30 1 -0.3634 0.5896 0.8417 31 1 3.2157 1.2927 0.3580 32 1 1.6324 2.0496 0.6553 33 1 2.9962 4.8103 -0.5307 34 1 3.4394 3.3074 0.2899 35 1 5.4936 4.3054 -0.0169 36 1 5.3958 3.2374 -1.4307 37 1 7.0013 5.5573 -0.7826 38 1 6.4821 7.0001 -1.6923 39 1 9.1729 4.2467 -5.8328 40 1 6.7325 4.8622 -4.7627 41 1 6.8212 3.5672 -3.5364 42 1 4.3140 3.2512 -4.5447 43 1 4.7940 2.7823 -2.9017 44 1 2.5819 4.7552 -2.9878 45 1 2.1901 3.1613 -3.7010 46 1 3.1721 -0.8750 1.2676 47 1 1.6120 -1.8586 1.2682 48 1 1.6112 -1.8583 -1.2686 49 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000946681663.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:48 Heat of formation + Delta-G solvation = 13.660375 kcal Electronic energy + Delta-G solvation = -26484.492423 eV Core-core repulsion = 23026.798385 eV Total energy + Delta-G solvation = -3457.694038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 306.205 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.47919 -38.94061 -37.49568 -35.79795 -33.15358 -32.37312 -30.72245 -29.85076 -28.43228 -27.39265 -27.01059 -24.22901 -22.98210 -22.63736 -22.44421 -20.13927 -19.97327 -18.66530 -18.23540 -17.15398 -16.89200 -16.01173 -15.75723 -15.18662 -15.05121 -14.51109 -14.29792 -13.91725 -13.76610 -13.56065 -13.16084 -12.94976 -12.83739 -12.67616 -12.39020 -12.24814 -12.05208 -11.71305 -11.60326 -11.42574 -11.38739 -11.19474 -11.04910 -10.85074 -10.77593 -10.66189 -10.39776 -10.07695 -10.02324 -9.94537 -9.74656 -9.62786 -9.46055 -9.41926 -8.63097 -8.48762 -6.79876 -5.65969 -3.04834 2.69227 2.97774 3.39876 3.44827 3.46910 3.69738 4.45947 4.50140 4.58480 4.65494 4.76892 4.87148 4.94533 5.07729 5.11838 5.31177 5.33971 5.36824 5.40660 5.45245 5.50980 5.51994 5.61071 5.68008 5.71124 5.73669 5.79134 5.86584 5.88588 5.91818 6.03801 6.05413 6.09966 6.15299 6.19178 6.37687 6.40243 6.48779 6.60647 6.66119 6.71647 6.81020 7.05228 7.56795 7.59259 7.67188 7.88303 8.24914 8.36598 9.25209 9.86284 10.50277 11.39750 Molecular weight = 306.20amu Principal moments of inertia in cm(-1) A = 0.024606 B = 0.003127 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.681916 B = 8950.789489 C = 9152.062272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.111 4.111 3 C -0.104 4.104 4 C 0.521 3.479 5 O -0.535 6.535 6 N -0.612 5.612 7 C 0.109 3.891 8 C -0.128 4.128 9 C -0.091 4.091 10 H 0.066 0.934 11 C 0.142 3.858 12 N -0.602 5.602 13 C -0.225 4.225 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.921 5.921 17 Si 0.913 3.087 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.169 3.831 22 C -0.109 4.109 23 H 0.067 0.933 24 C -0.125 4.125 25 C 0.115 3.885 26 C -0.179 4.179 27 C -0.156 4.156 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.020 0.980 38 H 0.019 0.981 39 H 0.251 0.749 40 H 0.089 0.911 41 H 0.013 0.987 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.721 -5.715 11.554 20.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.112 4.112 3 C -0.144 4.144 4 C 0.309 3.691 5 O -0.412 6.412 6 N -0.345 5.345 7 C -0.016 4.016 8 C -0.166 4.166 9 C -0.110 4.110 10 H 0.084 0.916 11 C 0.016 3.984 12 N -0.328 5.328 13 C -0.354 4.354 14 H 0.094 0.906 15 C -0.206 4.206 16 N -0.570 5.570 17 Si 0.743 3.257 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.207 1.207 21 C 0.044 3.956 22 C -0.129 4.129 23 H 0.085 0.915 24 C -0.163 4.163 25 C -0.007 4.007 26 C -0.216 4.216 27 C -0.193 4.193 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.031 0.969 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.104 0.896 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.111 0.889 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.871 -6.096 10.936 20.215 hybrid contribution 1.200 0.348 -0.095 1.253 sum -14.671 -5.748 10.840 19.125 Atomic orbital electron populations 1.21288 0.91833 1.01587 1.02137 1.21040 0.94913 0.89451 1.05781 1.21246 1.02427 0.95885 0.94846 1.20470 0.78043 0.79749 0.90827 1.90674 1.44613 1.58282 1.47614 1.48090 1.52947 1.22356 1.11139 1.20763 0.93760 0.96339 0.90710 1.21483 0.94710 1.00188 1.00234 1.21755 0.97686 0.96114 0.95405 0.91597 1.21128 0.89452 0.96192 0.91608 1.44201 1.09908 1.55909 1.22802 1.19065 0.86256 1.24290 1.05760 0.90551 1.24797 0.98520 0.99772 0.97513 1.69898 1.35374 1.37442 1.14241 0.86104 0.84439 0.77979 0.77160 1.21667 1.21673 1.20717 1.21436 0.83601 0.92830 0.97702 1.22425 0.99537 0.95886 0.95049 0.91467 1.21841 0.93933 0.98791 1.01760 1.22254 0.97917 0.97999 0.82504 1.23179 1.02193 1.01074 0.95170 1.22879 1.02351 1.00713 0.93353 0.91432 0.92673 0.92657 0.88921 0.88581 0.92085 0.90990 0.91020 0.90551 0.96235 0.96289 0.93799 0.89356 0.96880 0.91581 0.90933 0.90618 0.89580 0.88876 0.88830 0.88866 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 9.66 37.16 0.36 -0.69 16 2 C -0.11 -1.13 1.59 -154.51 -0.25 -1.37 16 3 C -0.10 -1.03 4.08 -27.88 -0.11 -1.15 16 4 C 0.52 6.87 7.61 -10.99 -0.08 6.78 16 5 O -0.54 -8.75 14.64 5.56 0.08 -8.67 16 6 N -0.61 -7.73 2.61 -174.35 -0.46 -8.18 16 7 C 0.11 1.19 5.67 -6.27 -0.04 1.15 16 8 C -0.13 -1.75 4.77 -28.31 -0.14 -1.89 16 9 C -0.09 -1.46 2.77 -89.87 -0.25 -1.71 16 10 H 0.07 0.93 7.70 -51.93 -0.40 0.53 16 11 C 0.14 2.88 6.82 -3.78 -0.03 2.85 16 12 N -0.60 -15.27 3.38 -172.13 -0.58 -15.85 16 13 C -0.23 -6.28 10.25 -15.06 -0.15 -6.43 16 14 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 15 C -0.01 -0.29 5.48 -17.43 -0.10 -0.39 16 16 N -0.92 -26.99 10.16 55.49 0.56 -26.42 16 17 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C 0.17 4.04 5.13 -3.41 -0.02 4.03 16 22 C -0.11 -1.96 2.93 -89.19 -0.26 -2.22 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 24 C -0.12 -1.98 4.50 -27.39 -0.12 -2.10 16 25 C 0.11 1.54 6.17 -2.42 -0.01 1.53 16 26 C -0.18 -1.57 9.87 -26.74 -0.26 -1.84 16 27 C -0.16 -1.69 9.18 -26.73 -0.25 -1.94 16 28 H 0.07 0.75 7.61 -51.93 -0.40 0.36 16 29 H 0.05 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.84 7.38 -51.93 -0.38 0.45 16 32 H 0.10 0.77 8.07 -51.93 -0.42 0.35 16 33 H 0.06 0.61 7.69 -51.93 -0.40 0.21 16 34 H 0.07 0.63 5.96 -51.93 -0.31 0.32 16 35 H 0.07 0.92 7.53 -51.93 -0.39 0.52 16 36 H 0.08 1.23 5.86 -51.93 -0.30 0.93 16 37 H 0.02 0.39 7.40 -51.93 -0.38 0.01 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.09 2.41 6.19 -51.93 -0.32 2.09 16 41 H 0.01 0.35 7.72 -51.92 -0.40 -0.06 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 1.25 5.47 -51.93 -0.28 0.96 16 44 H 0.08 0.93 7.81 -51.93 -0.41 0.52 16 45 H 0.09 1.21 7.31 -51.93 -0.38 0.83 16 46 H 0.09 0.76 8.08 -51.93 -0.42 0.34 16 47 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 48 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 49 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 367.15 15.07 5.53 5.53 Total: -1.00 -31.45 367.15 -10.11 -41.56 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -8.52 Total: 0.31 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -1.71 Total: -5.38 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: -0.47 Total: -50.46 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.45 -10.11 -41.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946681663.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.219 kcal (2) G-P(sol) polarization free energy of solvation -31.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds